Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0017761

Physical Location & Seq

Genomic Coordinates Reverse (-)

2632192 .. 2633444

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g03380.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGAACAACGAATGGGATTGTGCCGGACATGATATACTGGTCATGACACCACAGGTTCTCTTGGATGTCATGATGAATGCTTTCTTCAACTTAGAAATGTTTAGCTTGATAATCTTTGACGAATGTCATCGCGCTACCAGCAATCCTCAACTTAGAAACGGTCAGATATTGGTTTACACTGTAGAAGACATGACTGAAATCAAAACATTTGTTCCCTCAGTCCACAAATGTAGGTTTTACGAGCAAGCACGGTCCGCCTATTTGGATTTGAAAGAAAGGATGGAAGCTCTGCTGTCGAAGTATGCTTCTGAGTTGGAGTTGCAAGAGCAACTGCCAAGTCAGTACCAAGACATCAAGGACAATATAAAGATGCTTCAAAAGAAGTTACACAACAACCACATGAAGATCTTGTACTGCCTCGATGACCTTGGCATTGTATGCGCATATGAGATTTCTTCAACCTGGCATGCCAATTGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

162

Amino Acids

18.9

Weight (kDa)

5.15

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017761)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g03380
rosa_chinensis	RchiOBHm_Chr6g0271181 RchiOBHm_Chr6g0312091
rosa_multiflora	Rmu_co8257479.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192870
rosa_rugosa	Rorug01G0357500 Rorug05G0506300
rosa_samantha	Rh5AG241900 Rh5BG511100 Rh6AG509300 Rh7CG510200 Rh7DG477800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	445
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	347, 416
AgsI	TTSAA	4 cut(s)	91, 274, 380, 462
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	2 cut(s)	108, 290
AluI	AGCT	2 cut(s)	108, 290
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	137, 446
AspS9I	GGNCC	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	255
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
BbsI	GAAGAC	1 cut(s)	195
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	466
BfmI	CTRYAG	1 cut(s)	183
BglII	AGATCT	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	73, 288
BseMII	CTCAG	2 cut(s)	234, 303
BseNI	ACTGG	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	233, 304
BspFNI	CGCG	1 cut(s)	135
BspHI	TCATGA	2 cut(s)	45, 72
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	3 cut(s)	164, 184, 255
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	249, 471
BstDEI	CTNAG	4 cut(s)	94, 155, 220, 312
BstF5I	GGATG	2 cut(s)	73, 288
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	137, 446
BstKTI	GATC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 257, 441
BstNI	CCWGG	1 cut(s)	466
BstNSI	RCATGY	1 cut(s)	473
BstPAI	GACNNNNGTC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	73, 288
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	249, 471
CciI	TCATGA	2 cut(s)	45, 72
CfoI	GCGC	2 cut(s)	137, 446
Cfr13I	GGNCC	1 cut(s)	255
CpoI	CGGWCCG	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	346, 415
CspI	CGGWCCG	1 cut(s)	255
CviAII	CATG	6 cut(s)	32, 46, 73, 193, 403, 470
CviJI	RGCY	3 cut(s)	108, 290, 481
CviKI_1	RGCY	3 cut(s)	108, 290, 481
CviQI	GTAC	2 cut(s)	346, 415
DdeI	CTNAG	4 cut(s)	94, 155, 220, 312
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	6 cut(s)	35, 49, 76, 196, 406, 473
FatI	CATG	6 cut(s)	31, 45, 72, 192, 402, 469
FauNDI	CATATG	1 cut(s)	448
FokI	GGATG	2 cut(s)	80, 295
FspAI	RTGCGCAY	1 cut(s)	445
FspI	TGCGCA	1 cut(s)	445
GlaI	GCGC	2 cut(s)	136, 445
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	2 cut(s)	137, 446
Hin1II	CATG	6 cut(s)	35, 49, 76, 196, 406, 473
Hin6I	GCGC	2 cut(s)	135, 444
HinP1I	GCGC	2 cut(s)	135, 444
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	178, 226
Hpy188I	TCNGA	2 cut(s)	168, 313
Hpy188III	TCNNGA	2 cut(s)	46, 73
Hpy8I	GTNNAC	2 cut(s)	178, 226
HpyCH4III	ACNGT	3 cut(s)	164, 184, 255
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 257, 441
HpyF3I	CTNAG	4 cut(s)	94, 155, 220, 312
Hsp92II	CATG	6 cut(s)	35, 49, 76, 196, 406, 473
HspAI	GCGC	2 cut(s)	135, 444
Kzo9I	GATC	1 cut(s)	408
LpnPI	CCDG	6 cut(s)	26, 40, 41, 154, 451, 478
LweI	GCATC	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	4 cut(s)	79, 200, 418, 450
MfeI	CAATTG	1 cut(s)	475
MflI	RGATCY	1 cut(s)	408
MluCI	AATT	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	3 cut(s)	159, 229, 431
MroXI	GAANNNNTTC	1 cut(s)	83
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	466
MunI	CAATTG	1 cut(s)	475
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	141, 257, 441
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	6 cut(s)	35, 49, 76, 196, 406, 473
NsbI	TGCGCA	1 cut(s)	445
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PagI	TCATGA	2 cut(s)	45, 72
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	83
PshAI	GACNNNNGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	2 cut(s)	347, 416
RsaNI	GTAC	2 cut(s)	346, 415
Rsr2I	CGGWCCG	1 cut(s)	255
RsrII	CGGWCCG	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	466
SetI	ASST	6 cut(s)	60, 110, 239, 292, 432, 467
SfaNI	GCATC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	255
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	1 cut(s)	475
SsiI	CCGC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	164, 184, 255
TaqI	TCGA	2 cut(s)	299, 423
TasI	AATT	1 cut(s)	475
TatI	WGTACW	1 cut(s)	414
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	92, 419
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	255
XceI	RCATGY	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.