Rorug05G0506300

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017761
Physical Location & Seq
Reverse (-)
68826801 .. 68827114
314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0506300.1

Sequence Viewer

Length: 222 bp
ATGTTATGTTATTCTTCTTCTTCAAGTCCACTATGCTCAGGAAATCAGTCTGTAGCTGCTCCAAAACTTGGTGGCTTCAGGAATTTGCAGGTGTTTGAACGGAAGAAAAAAGCACTCCTACACTGTATTATTGTAGGAGATGGTACCACCTGGCCATCGGGTCTGGCAGAGAACTTAGCAAGATTATTGGGAGAGAATTCGTCAAAGATTGCATTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

73

Amino Acids

7.71

Weight (kDa)

9.3

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017761)

Species Orthologous Gene IDs
pyrus_communis pycom11g03380
rosa_chinensis RchiOBHm_Chr6g0271181 RchiOBHm_Chr6g0312091
rosa_multiflora Rmu_co8257479.1_g000001
rosa_roxburghii Rroxscaffold_7G00192870
rosa_rugosa Rorug01G0357500 Rorug05G0506300
rosa_samantha Rh5AG241900 Rh5BG511100 Rh6AG509300 Rh7CG510200 Rh7DG477800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 2 cut(s) 82, 196
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 24, 98
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 56, 218
AluI AGCT 2 cut(s) 56, 218
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 82, 196
Asp718I GGTACC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 154
BanI GGYRCC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 134, 163
BciT130I CCWGG 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 68
BsnI GGCC 1 cut(s) 154
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 37, 175
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 144
CviJI RGCY 4 cut(s) 56, 75, 154, 218
CviKI_1 RGCY 4 cut(s) 56, 75, 154, 218
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 2 cut(s) 37, 175
EaeI YGGCCR 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 149
FaiI YATR 2 cut(s) 7, 34
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 39, 79
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 88, 212
HpyF3I CTNAG 2 cut(s) 37, 175
KpnI GGTACC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 6 cut(s) 24, 64, 74, 136, 149, 163
Lsp1109I GCAGC 1 cut(s) 43
MboII GAAGA 4 cut(s) 6, 9, 12, 115
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 2 cut(s) 82, 196
MluNI TGGCCA 1 cut(s) 154
Mox20I TGGCCA 1 cut(s) 154
MscI TGGCCA 1 cut(s) 154
Msp20I TGGCCA 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SatI GCNGC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 151
SetI ASST 4 cut(s) 58, 93, 152, 220
SfcI CTRYAG 1 cut(s) 51
Sse9I AATT 2 cut(s) 82, 196
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 125
TasI AATT 2 cut(s) 82, 196
TscAI CASTG 1 cut(s) 128
TseI GCWGC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 68
XapI RAATTY 2 cut(s) 82, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.