Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Reverse (-)

47391460 .. 47392676

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0357500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGATAATGGATGACTTGGAAGTGAAGCCTATGTCTACCATCTCGACTATAGCTCTGCTCAACAGCTTTAATGTTAGAGAATTTGGTGCCCTTGAAGAGAAGGTTATTAATCTAGGCATGGATGAGGGTGTGAAATTGCTCAAGGATTCATTGCAATCAAAGTCAGTTCTTACTAATATAATGTGTTTCTTGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

66

Amino Acids

7.39

Weight (kDa)

4.5

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	1 - 61	2.3e-10	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	2 cut(s)	53, 66
AluI	AGCT	2 cut(s)	53, 66
ApoI	RAATTY	1 cut(s)	80
AseI	ATTAAT	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	16, 127
BseMI	GCAATG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	16, 127
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	16, 127
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	3 cut(s)	28, 53, 66
CviKI_1	RGCY	3 cut(s)	28, 53, 66
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	121
FaiI	YATR	4 cut(s)	32, 50, 119, 179
FatI	CATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	35
FokI	GGATG	2 cut(s)	23, 134
FspBI	CTAG	1 cut(s)	113
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	121
MaeI	CTAG	1 cut(s)	113
MboII	GAAGA	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	2 cut(s)	80, 134
MnlI	CCTC	2 cut(s)	118, 187
MseI	TTAA	2 cut(s)	69, 108
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	69, 108
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	3 cut(s)	55, 68, 105
SfcI	CTRYAG	1 cut(s)	48
SgeI	CNNG	6 cut(s)	28, 55, 104, 125, 130, 154
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	80, 134
SspMI	CTAG	1 cut(s)	113
TaqI	TCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	80, 134
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	69, 108
Tru9I	TTAA	2 cut(s)	69, 108
TspDTI	ATGAA	1 cut(s)	138
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.