Rh1AG366600

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010633
Physical Location & Seq
Forward (+)
60155806 .. 60157524
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG366600.1

Sequence Viewer

Length: 951 bp
ATGGATGCGGAGGTGGTAGTGGTGGAGGTGATAGTCAGCGAACACGATAAGGTAGGGGATCTCAGGGAGCATCTACAGGTGGCAGACTTCCTTCTCCCTCCACATTATCTCTTTATGCATAAAATGTCTGTGATGTTCGAGAAAAGATCATTCAGCTGGCATGACGTTTTCGAAGGTCATACTATAGATGTAGTTCCGGTGCCGCAAGTGCTGGAACAAGAAAAAGATGTAAAGGTGTTGGTGACCTTCCGTGGAAGTAAAAATTACTCTGAGAAGGATTTTGACACGAGAAAAATAAGTCGTCTCTTACCCAATTCCTGGTTCAATTCCTGCGTACTGCGTATGCCTGCTGGGGTGTTCCATGAACTAATGACATCTAGTGGTCCACAGTTTACTCACTTGGAGATTGAGAGGAGGTGTAATACGTACACTAACATATGCAGCGATGATACGGTACAAATTTTTAGTTTTTCAGGACTAAAATCATTACGGTCGTTCAAGGTGAATTTGATTGTGGATAATAAGGGAACTGTGGTGGATATGAATCCTTTTCGTAAGGTGAAAAGGCTGAGGGAGGAGCTGAAGGAGAAGAAGCTACATCTCCCGCGACGGTATTACTTCATCCTGCTCGTCCAAAATGCTCAATATCTTATGGACGAAGAAGTGGAATTTGGGTATTACTTTATCCATCTTGACGATGTGATGTACGATGAAGATGGCACGATCAAAGTTGGCAATACGATTACTGTTAATATAAAGTTTATCCATGAATACACCGGTAAAGTGGATGAATTGGTGAAGGACAGAATTGAAGCTCAGAATGAGGTCAGGGTTAAGGAGAAGGAAGAGAAAGAAGTTATAGCACAGCAGAACATGTATGCACAATTATTGCCTCTTGCTTTGCCTGCTCCACTAATCCCTGGTATGCTTTTGTTCCACTATTCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

316

Amino Acids

37.0

Weight (kDa)

5.87

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 318
AccII CGCG 1 cut(s) 607
AciI CCGC 3 cut(s) 8, 203, 605
AclWI GGATC 1 cut(s) 66
AcsI RAATTY 3 cut(s) 459, 505, 668
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 4 cut(s) 336, 428, 456, 707
AfiI CCNNNNNNNGG 1 cut(s) 318
AflIII ACRYGT 1 cut(s) 873
AgeI ACCGGT 1 cut(s) 776
AgsI TTSAA 3 cut(s) 325, 499, 812
AjnI CCWGG 2 cut(s) 317, 919
AjuI GAANNNNNNNTTGG 4 cut(s) 305, 337, 654, 686
AluBI AGCT 4 cut(s) 156, 580, 595, 815
AluI AGCT 4 cut(s) 156, 580, 595, 815
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 441
ApoI RAATTY 3 cut(s) 459, 505, 668
AsiGI ACCGGT 1 cut(s) 776
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 5 cut(s) 40, 253, 514, 571, 808
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 199
BauI CACGAG 1 cut(s) 286
BbvCI CCTCAGC 1 cut(s) 569
BbvI GCAGC 1 cut(s) 453
BccI CCATC 2 cut(s) 696, 710
BciT130I CCWGG 2 cut(s) 319, 921
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 2 cut(s) 74, 183
BisI GCNGC 2 cut(s) 203, 442
BlsI GCNGC 2 cut(s) 204, 443
Bme1390I CCNGG 2 cut(s) 319, 921
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 319, 921
BmsI GCATC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 2 cut(s) 250, 919
BsaWI WCCGGW 2 cut(s) 196, 776
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse118I RCCGGY 1 cut(s) 776
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 2 cut(s) 319, 921
BseDI CCNNGG 2 cut(s) 250, 919
BseGI GGATG 3 cut(s) 10, 621, 793
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 4 cut(s) 76, 261, 560, 830
BseRI GAGGAG 2 cut(s) 427, 590
BseXI GCAGC 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 607
Bsh1285I CGRYCG 1 cut(s) 494
BshNI GGYRCC 1 cut(s) 199
BshTI ACCGGT 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 494
BsiSI CCGG 2 cut(s) 197, 777
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
Bsp119I TTCGAA 1 cut(s) 171
Bsp143I GATC 3 cut(s) 58, 146, 723
BspACI CCGC 3 cut(s) 8, 203, 605
BspCNI CTCAG 4 cut(s) 75, 262, 561, 829
BspFNI CGCG 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 776
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 2 cut(s) 250, 919
BssMI GATC 3 cut(s) 58, 146, 723
BssSI CACGAG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 286
Bst2UI CCWGG 2 cut(s) 319, 921
Bst4CI ACNGT 6 cut(s) 390, 454, 492, 532, 612, 748
Bst6I CTCTTC 1 cut(s) 840
BstBAI YACGTR 1 cut(s) 426
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 3 cut(s) 158, 348, 906
BstDEI CTNAG 4 cut(s) 62, 270, 569, 816
BstDSI CCRYGG 1 cut(s) 250
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 3 cut(s) 10, 621, 793
BstFNI CGCG 1 cut(s) 607
BstKTI GATC 3 cut(s) 61, 149, 726
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 3 cut(s) 58, 146, 723
BstMCI CGRYCG 1 cut(s) 494
BstMWI GCNNNNNNNGC 2 cut(s) 208, 905
BstNI CCWGG 2 cut(s) 319, 921
BstNSI RCATGY 1 cut(s) 877
BstPI GGTNACC 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 317, 919
BstSFI CTRYAG 2 cut(s) 74, 183
BstSNI TACGTA 1 cut(s) 426
BstUI CGCG 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 10, 621, 793
Cac8I GCNNGC 3 cut(s) 158, 348, 906
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 4 cut(s) 335, 427, 455, 706
CspAI ACCGGT 1 cut(s) 776
CviAII CATG 4 cut(s) 161, 362, 767, 874
CviJI RGCY 5 cut(s) 156, 568, 580, 595, 815
CviKI_1 RGCY 5 cut(s) 156, 568, 580, 595, 815
CviQI GTAC 4 cut(s) 335, 427, 455, 706
DdeI CTNAG 4 cut(s) 62, 270, 569, 816
DpnI GATC 3 cut(s) 60, 148, 725
DpnII GATC 3 cut(s) 58, 146, 723
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Eco105I TACGTA 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 602
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 317, 919
EcoT22I ATGCAT 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 4 cut(s) 164, 365, 770, 877
FatI CATG 4 cut(s) 160, 361, 766, 873
FauI CCCGC 1 cut(s) 612
FauNDI CATATG 1 cut(s) 437
Fnu4HI GCNGC 2 cut(s) 203, 442
FokI GGATG 3 cut(s) 17, 608, 800
Fsp4HI GCNGC 2 cut(s) 203, 442
FspBI CTAG 1 cut(s) 378
GluI GCNGC 2 cut(s) 203, 442
GsaI CCCAGC 1 cut(s) 354
HapII CCGG 2 cut(s) 197, 777
Hin1II CATG 4 cut(s) 164, 365, 770, 877
HinfI GANTC 1 cut(s) 544
HpaII CCGG 2 cut(s) 197, 777
HphI GGTGA 5 cut(s) 40, 253, 514, 571, 808
Hpy166II GTNNAC 3 cut(s) 386, 393, 429
Hpy188I TCNGA 2 cut(s) 271, 819
Hpy188III TCNNGA 3 cut(s) 139, 474, 692
Hpy8I GTNNAC 3 cut(s) 386, 393, 429
Hpy99I CGWCG 1 cut(s) 612
HpyAV CCTTC 7 cut(s) 101, 167, 256, 268, 577, 793, 835
HpyCH4III ACNGT 6 cut(s) 390, 454, 492, 532, 612, 748
HpyCH4IV ACGT 2 cut(s) 165, 425
HpyCH4V TGCA 3 cut(s) 118, 441, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 905
HpyF3I CTNAG 4 cut(s) 62, 270, 569, 816
HpySE526I ACGT 2 cut(s) 165, 425
Hsp92II CATG 4 cut(s) 164, 365, 770, 877
Kzo9I GATC 3 cut(s) 58, 146, 723
LmnI GCTCC 3 cut(s) 67, 577, 913
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 378
MaeII ACGT 2 cut(s) 165, 425
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 60, 148, 725
MboI GATC 3 cut(s) 58, 146, 723
MboII GAAGA 4 cut(s) 601, 671, 725, 857
MflI RGATCY 1 cut(s) 58
MluCI AATT 9 cut(s) 262, 313, 325, 459, 505, 668, 791, 807, 884
MnlI CCTC 9 cut(s) 4, 19, 108, 405, 408, 564, 568, 817, 903
Mph1103I ATGCAT 1 cut(s) 120
MseI TTAA 2 cut(s) 750, 834
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 2 cut(s) 197, 777
MspR9I CCNGG 2 cut(s) 319, 921
MvaI CCWGG 2 cut(s) 319, 921
MvnI CGCG 1 cut(s) 607
MwoI GCNNNNNNNGC 2 cut(s) 208, 905
NdeI CATATG 1 cut(s) 437
NdeII GATC 3 cut(s) 58, 146, 723
NlaIII CATG 4 cut(s) 164, 365, 770, 877
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 120
NspI RCATGY 1 cut(s) 877
NspV TTCGAA 1 cut(s) 171
PciI ACATGT 1 cut(s) 873
PfeI GAWTC 1 cut(s) 544
PflMI CCANNNNNTGG 1 cut(s) 318
PinAI ACCGGT 1 cut(s) 776
PkrI GCNGC 2 cut(s) 204, 443
Ppu21I YACGTR 1 cut(s) 426
PscI ACATGT 1 cut(s) 873
Psp6I CCWGG 2 cut(s) 317, 919
PspEI GGTNACC 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 2 cut(s) 317, 919
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 383
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 4 cut(s) 336, 428, 456, 707
RsaNI GTAC 4 cut(s) 335, 427, 455, 706
SaqAI TTAA 2 cut(s) 750, 834
SatI GCNGC 2 cut(s) 203, 442
Sau3AI GATC 3 cut(s) 58, 146, 723
Sau96I GGNCC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 319, 921
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 2 cut(s) 74, 183
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 1 cut(s) 383
SnaBI TACGTA 1 cut(s) 426
Sse9I AATT 9 cut(s) 262, 313, 325, 459, 505, 668, 791, 807, 884
SsiI CCGC 3 cut(s) 8, 203, 605
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 317, 919
TaaI ACNGT 6 cut(s) 390, 454, 492, 532, 612, 748
TaiI ACGT 2 cut(s) 168, 428
TaqI TCGA 2 cut(s) 138, 171
TasI AATT 9 cut(s) 262, 313, 325, 459, 505, 668, 791, 807, 884
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 2 cut(s) 750, 834
Tru9I TTAA 2 cut(s) 750, 834
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 441
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 7 cut(s) 378, 557, 610, 726, 783, 804, 933
TspGWI ACGGA 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 3 cut(s) 459, 505, 668
XceI RCATGY 1 cut(s) 877
XspI CTAG 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.