Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Forward (+)

60154790 .. 60155644

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG366500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATGGAAAAACTTCCTAATGAATTAATCGAGAGGATAGGGAACTGCATGCATACTAAACTCGATGTTACTCGATTTCATGCTATTTGTCAACAAATGCGATCGTCTATTCCTCCATATGAGACCAAGGTTCCCATCAAAGTTCGCATTCAGGGTCAAGATTCGGTATACACATTCGTCAAGAGCATTGTGTATCATCTTGTACAACCAGCTTCAAAAGCTTCTAGTTCCAGTTCAATGGAATGGGTTGTTAAAGTCCGAGACGTTGAACCCGAAAATCGTTGTCTTTTGTTACATCCACTTTCCACCTCGTTGCCTTTAGAGCCGAATTCAGAGTCGTTTCCAGATGAATTAAACGTCTTGGAATTTCAGGTATCGGAGTTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCCGAACACAAGGTGGTCGTATCCTCGGATCCTCATTGGCATGCGCTCATGGTGATGGCTGAGGCCAAACTATACTACGGGTGGGATTTCAGTACCGCTAGTGTTGAGATTCAAGAGTGCACCTTAGTACGGGATATACTCTTTGAACACCACGAATTCGAAGATGTTATTTTTCATAAGAGCAAGTTCTATGTTGTTGCCAAGAATGGTACGACTGTATCCATTGATTCATCCTTGAAGATGACACAGGTCGCGTATCCAACAACTTGTTCTCGCAGTAAGAAATTGGTGGAGTCATTGGGGGATCTACTTTTAGTTGAGAAACGTGCGAGGCCTTTGAGGCGGAGATGTCCTCATAATCCAACTCATCATGGATGCAAGGTTTACAAGTTGAACGAACCTGAGAGAGTGAGAGGCAATGGGTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

284

Amino Acids

32.55

Weight (kDa)

8.35

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	73 - 274	2.5e-18	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	677
AciI	CCGC	2 cut(s)	519, 766
AclWI	GGATC	3 cut(s)	446, 459, 735
AcsI	RAATTY	3 cut(s)	328, 365, 578
AdeI	CACNNNGTG	1 cut(s)	436
AfaI	GTAC	4 cut(s)	204, 517, 552, 634
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	8 cut(s)	216, 237, 269, 536, 569, 661, 817, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	676, 708
AluBI	AGCT	2 cut(s)	212, 221
AluI	AGCT	2 cut(s)	212, 221
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	2 cut(s)	116, 255
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	3 cut(s)	446, 459, 735
AoxI	GGCC	3 cut(s)	423, 486, 755
ApaLI	GTGCAC	1 cut(s)	541
ApoI	RAATTY	3 cut(s)	328, 365, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AseI	ATTAAT	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	487
AsuII	TTCGAA	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	545
BaeI	ACNNNNGTAYC	4 cut(s)	624, 624, 657, 657
BamHI	GGATCC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	545
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	143, 472
BciVI	GTATCC	3 cut(s)	454, 652, 690
BcoDI	GTCTC	2 cut(s)	116, 255
BfaI	CTAG	2 cut(s)	225, 522
BfuI	GTATCC	3 cut(s)	454, 652, 690
BglI	GCCNNNNNGGC	1 cut(s)	763
BmiI	GGNNCC	2 cut(s)	132, 453
BmsI	GCATC	1 cut(s)	788
BoxI	GACNNNNGTC	1 cut(s)	671
BplI	GAGNNNNNCTC	2 cut(s)	760, 792
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	126, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	847
BseDI	CCNNGG	2 cut(s)	126, 447
BseGI	GGATG	3 cut(s)	295, 653, 803
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMI	GCAATG	1 cut(s)	847
BseMII	CTCAG	2 cut(s)	474, 816
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	677
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	425, 488, 757
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	2 cut(s)	116, 255
BsmBI	CGTCTC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	425, 488, 757
Bso31I	GGTCTC	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	101, 451, 727
BspACI	CCGC	2 cut(s)	519, 766
BspANI	GGCC	3 cut(s)	425, 488, 757
BspCNI	CTCAG	2 cut(s)	475, 817
BspFNI	CGCG	1 cut(s)	677
BspLI	GGNNCC	2 cut(s)	132, 453
BspPI	GGATC	3 cut(s)	446, 459, 735
BspT104I	TTCGAA	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	847
BsrGI	TGTACA	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	126, 447
BssMI	GATC	3 cut(s)	101, 451, 727
BssNAI	GTATAC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	640
BstAUI	TGTACA	1 cut(s)	202
BstBI	TTCGAA	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	50, 465
BstDEI	CTNAG	3 cut(s)	483, 547, 825
BstF5I	GGATG	3 cut(s)	295, 653, 803
BstFNI	CGCG	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	3 cut(s)	104, 454, 730
BstMAI	GTCTC	2 cut(s)	116, 255
BstMBI	GATC	3 cut(s)	101, 451, 727
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 322, 763
BstNSI	RCATGY	2 cut(s)	52, 467
BstPAI	GACNNNNGTC	1 cut(s)	671
BstSLI	GKGCMC	1 cut(s)	545
BstUI	CGCG	1 cut(s)	677
BstX2I	RGATCY	2 cut(s)	451, 727
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	2 cut(s)	451, 727
BstZ17I	GTATAC	1 cut(s)	169
BsuI	GTATCC	3 cut(s)	454, 652, 690
BsuRI	GGCC	3 cut(s)	425, 488, 757
BtsCI	GGATG	3 cut(s)	295, 653, 803
Cac8I	GCNNGC	2 cut(s)	50, 465
CfoI	GCGC	1 cut(s)	469
Csp6I	GTAC	4 cut(s)	203, 516, 551, 633
CviAII	CATG	5 cut(s)	49, 80, 464, 472, 794
CviJI	RGCY	7 cut(s)	212, 221, 325, 425, 482, 488, 757
CviKI_1	RGCY	7 cut(s)	212, 221, 325, 425, 482, 488, 757
CviQI	GTAC	4 cut(s)	203, 516, 551, 633
DdeI	CTNAG	3 cut(s)	483, 547, 825
DpnI	GATC	3 cut(s)	103, 453, 729
DpnII	GATC	3 cut(s)	101, 451, 727
DraIII	CACNNNGTG	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	757
Eco31I	GGTCTC	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	328, 578
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	5 cut(s)	52, 83, 467, 475, 797
FatI	CATG	5 cut(s)	48, 79, 463, 471, 793
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	168
FokI	GGATG	3 cut(s)	282, 640, 810
FspBI	CTAG	2 cut(s)	225, 522
GlaI	GCGC	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	425, 488, 757
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	5 cut(s)	52, 83, 467, 475, 797
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	5 cut(s)	161, 335, 532, 650, 716
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	4 cut(s)	92, 169, 543, 808
Hpy188I	TCNGA	4 cut(s)	260, 334, 379, 451
Hpy188III	TCNNGA	5 cut(s)	31, 158, 181, 344, 536
Hpy8I	GTNNAC	4 cut(s)	92, 169, 543, 808
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	3 cut(s)	264, 357, 748
HpyCH4V	TGCA	4 cut(s)	48, 52, 543, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 322, 763
HpyF3I	CTNAG	3 cut(s)	483, 547, 825
HpySE526I	ACGT	3 cut(s)	264, 357, 748
Hsp92II	CATG	5 cut(s)	52, 83, 467, 475, 797
HspAI	GCGC	1 cut(s)	467
Kzo9I	GATC	3 cut(s)	101, 451, 727
LpnPI	CCDG	7 cut(s)	137, 222, 244, 356, 357, 656, 837
LweI	GCATC	1 cut(s)	788
MaeI	CTAG	2 cut(s)	225, 522
MaeII	ACGT	3 cut(s)	264, 357, 748
MaeIII	GTNAC	2 cut(s)	67, 291
MalI	GATC	3 cut(s)	103, 453, 729
MboI	GATC	3 cut(s)	101, 451, 727
MboII	GAAGA	2 cut(s)	596, 673
MflI	RGATCY	2 cut(s)	451, 727
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	7 cut(s)	23, 328, 350, 365, 412, 578, 707
MlyI	GAGTC	2 cut(s)	344, 725
MmeI	TCCRAC	2 cut(s)	707, 809
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	3 cut(s)	26, 252, 353
MslI	CAYNNNNRTG	2 cut(s)	462, 476
Mva1269I	GAATGC	1 cut(s)	147
MvnI	CGCG	1 cut(s)	677
MwoI	GCNNNNNNNGC	3 cut(s)	218, 322, 763
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	3 cut(s)	101, 451, 727
NlaIII	CATG	5 cut(s)	52, 83, 467, 475, 797
NlaIV	GGNNCC	2 cut(s)	132, 453
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	2 cut(s)	52, 467
NspV	TTCGAA	1 cut(s)	582
PaeI	GCATGC	2 cut(s)	52, 467
PceI	AGGCCT	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	161, 532, 650
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	2 cut(s)	343, 724
PpsI	GAGTC	2 cut(s)	343, 724
PshAI	GACNNNNGTC	1 cut(s)	671
PshBI	ATTAAT	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	132, 453
PsuI	RGATCY	2 cut(s)	451, 727
PvuI	CGATCG	1 cut(s)	104
RsaI	GTAC	4 cut(s)	204, 517, 552, 634
RsaNI	GTAC	4 cut(s)	203, 516, 551, 633
RseI	CAYNNNNRTG	2 cut(s)	462, 476
SaqAI	TTAA	3 cut(s)	26, 252, 353
Sau3AI	GATC	3 cut(s)	101, 451, 727
SchI	GAGTC	2 cut(s)	344, 725
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	1 cut(s)	788
SfuI	TTCGAA	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	462, 476
SphI	GCATGC	2 cut(s)	52, 467
Sse9I	AATT	7 cut(s)	23, 328, 350, 365, 412, 578, 707
SseBI	AGGCCT	1 cut(s)	757
SsiI	CCGC	2 cut(s)	519, 766
SspMI	CTAG	2 cut(s)	225, 522
StuI	AGGCCT	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	3 cut(s)	267, 360, 751
TaqI	TCGA	4 cut(s)	30, 63, 73, 582
TasI	AATT	7 cut(s)	23, 328, 350, 365, 412, 578, 707
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	3 cut(s)	161, 532, 650
Tru1I	TTAA	3 cut(s)	26, 252, 353
Tru9I	TTAA	3 cut(s)	26, 252, 353
TspDTI	ATGAA	5 cut(s)	36, 68, 363, 587, 642
VneI	GTGCAC	1 cut(s)	541
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	3 cut(s)	328, 365, 578
XceI	RCATGY	2 cut(s)	52, 467
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	2 cut(s)	225, 522
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.