Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Forward (+)

62224035 .. 62224597

Gene Structure 563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG344300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCGATCGTCTATTCCTCCATATGAGACCAAGGTTCCCATCAAAGTTCGCATTCAGGGTCAAGATTCGGTATACACATTCGTCAAGAGCATTGTGTATCATCTTGTACAACCAGCTTCAAAAGCTTCTTGTTCCAGTTCAATGGAATGGGTTGTTAAAGTATTGGAATTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCCGAACACAAGGTGGTCGTATCCTCGGATCCTCATTGGCATGCGCTCATGGTGATGGCTGAGGCAAAACTATACTACTGGGATTTCAGTACCGCTAGTGTTGAGATTGAAGAGTGCACCTTAGTACAGGATGTACTCTTTGAACACCACGAATTCGAAGATGTTATTTTTCATAAGAGCAAGTTCTATGTTGTTGCCAAGAATGGTACTACTGTATATATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

145

Amino Acids

16.72

Weight (kDa)

6.43

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	35 - 142	1e-05	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	2 cut(s)	233, 246
AcsI	RAATTY	1 cut(s)	362
AdeI	CACNNNGTG	1 cut(s)	223
AfaI	GTAC	5 cut(s)	108, 301, 336, 345, 418
AgsI	TTSAA	4 cut(s)	120, 141, 320, 353
AluBI	AGCT	2 cut(s)	116, 125
AluI	AGCT	2 cut(s)	116, 125
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	20
Alw44I	GTGCAC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	233, 246
AoxI	GGCC	1 cut(s)	210
ApaLI	GTGCAC	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	274
AsuII	TTCGAA	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	329
BaeI	ACNNNNGTAYC	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	329
BbvCI	CCTCAGC	1 cut(s)	270
BccI	CCATC	2 cut(s)	47, 259
BciVI	GTATCC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	36, 240
BmrI	ACTGGG	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	30, 234
Bse1I	ACTGG	2 cut(s)	135, 293
BseDI	CCNNGG	2 cut(s)	30, 234
BseGI	GGATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	135, 293
BseSI	GKGCMC	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	5, 238
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	36, 240
BspPI	GGATC	2 cut(s)	233, 246
BspT104I	TTCGAA	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	135, 293
BssECI	CCNNGG	2 cut(s)	30, 234
BssMI	GATC	2 cut(s)	5, 238
BssNAI	GTATAC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	30
Bst1107I	GTATAC	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	315
BstAUI	TGTACA	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	270, 331
BstF5I	GGATG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	8, 241
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	5, 238
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	254
BstSLI	GKGCMC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	238
BstZ17I	GTATAC	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	256
Csp6I	GTAC	5 cut(s)	107, 300, 335, 344, 417
CviAII	CATG	2 cut(s)	251, 259
CviJI	RGCY	4 cut(s)	116, 125, 212, 269
CviKI_1	RGCY	4 cut(s)	116, 125, 212, 269
CviQI	GTAC	5 cut(s)	107, 300, 335, 344, 417
DdeI	CTNAG	2 cut(s)	270, 331
DpnI	GATC	2 cut(s)	7, 240
DpnII	GATC	2 cut(s)	5, 238
DraIII	CACNNNGTG	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	254, 262
FatI	CATG	2 cut(s)	250, 258
FauNDI	CATATG	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	1 cut(s)	353
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	2 cut(s)	254, 262
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	73, 327
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	62, 85
Hpy8I	GTNNAC	2 cut(s)	73, 327
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	270, 331
Hsp92II	CATG	2 cut(s)	254, 262
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	5, 238
LpnPI	CCDG	5 cut(s)	41, 126, 148, 274, 323
MaeI	CTAG	1 cut(s)	306
MalI	GATC	2 cut(s)	7, 240
MboI	GATC	2 cut(s)	5, 238
MboII	GAAGA	2 cut(s)	332, 380
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	3 cut(s)	167, 199, 362
MnlI	CCTC	5 cut(s)	27, 202, 244, 252, 265
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	249, 263
Mva1269I	GAATGC	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	2 cut(s)	5, 238
NlaIII	CATG	2 cut(s)	254, 262
NlaIV	GGNNCC	2 cut(s)	36, 240
NspI	RCATGY	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	254
PctI	GAATGC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	65
Ple19I	CGATCG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	36, 240
PsuI	RGATCY	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	8
RsaI	GTAC	5 cut(s)	108, 301, 336, 345, 418
RsaNI	GTAC	5 cut(s)	107, 300, 335, 344, 417
RseI	CAYNNNNRTG	2 cut(s)	249, 263
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	5, 238
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	5 cut(s)	36, 118, 127, 225, 332
SfuI	TTCGAA	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	249, 263
SphI	GCATGC	1 cut(s)	254
Sse9I	AATT	3 cut(s)	167, 199, 362
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	167, 199, 362
TatI	WGTACW	3 cut(s)	106, 334, 343
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	371
VneI	GTGCAC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.