Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Reverse (-)

7476878 .. 7477924

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATGGAAAAACTTCTTGATGAATTAATCGAGAGGATAGGGAACTGCATGCATACTAAACTCGATGTTACTGGATTTCGTGCTATTTGTCAACAAATGCGATCGTCTATTCCTCCATATGAGACCAAGGTTCCCAGCAAAGTTCGCATTCAGGGTCAAGATTCGGTATCGGAATTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCCGAACACAAGGTGGTCGTATCCTCGGATCCTCATTGGCATGCGCTCATGGTGATGGCTGAGGCAAAACTATACTACGGGGATTTCAGTACCGCTAGTGTTGAGATTCAAGAGTGCACTTTAGTACGGGATATACTCTTTGAACACCACGAATTCGAAGATGTTATTTTTCATAAGAGCAAGTTCTATGTTGTTGCCAAGAATGGTACTACTGTATCCATTGATTCATCCTTGAAGATGACACAGGTCGCGTATCCAACAACTTGTTCTTGCAGTAAGAAATTGGTGGAGTCATTGGGGGATCTACTTTTAGTTGTGAAATGTGTGAGGACTTTGAGGTGGAGATGTCCTCATAATCCAACTCATCATGGATGCAAGGTTTACAAGTTGAACGAACCTGAGAAGCAATGGGTTGAAATGAAAAGCTTGAATAAAGATCGCAGTTTGTTTGTGGGTGACTACACCAGCTTCTCTGGTTCTAGATATTCCCAGATGCTTGGGGAATCACATTTTTTTCTCATCAGATCCATACTTAGGGTTTCATCGATCCAAGATCAAGTTGTTCGTGAGGCTTCTCATGGATGCGGAGGTGGTAGTGGTGGAGGTGATAGTCAGCGAACACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

280

Amino Acids

31.72

Weight (kDa)

8.47

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	44 - 233	2.3e-22	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	467
AciI	CCGC	2 cut(s)	309, 801
AclWI	GGATC	5 cut(s)	239, 252, 525, 735, 757
AcsI	RAATTY	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	3 cut(s)	307, 342, 424
AfiI	CCNNNNNNNGG	1 cut(s)	750
AgsI	TTSAA	6 cut(s)	326, 359, 451, 607, 632, 646
AjuI	GAANNNNNNNTTGG	2 cut(s)	466, 498
AluBI	AGCT	2 cut(s)	642, 684
AluI	AGCT	2 cut(s)	642, 684
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	116
Alw44I	GTGCAC	1 cut(s)	331
AlwI	GGATC	5 cut(s)	239, 252, 525, 735, 757
AoxI	GGCC	1 cut(s)	216
ApaLI	GTGCAC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	368
AseI	ATTAAT	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	262
AsuHPI	GGTGA	3 cut(s)	280, 683, 833
AsuII	TTCGAA	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	335
BaeI	ACNNNNGTAYC	4 cut(s)	414, 414, 447, 447
BamHI	GGATCC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	265
BciVI	GTATCC	3 cut(s)	247, 442, 480
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	312, 696
BfuI	GTATCC	3 cut(s)	247, 442, 480
BmiI	GGNNCC	2 cut(s)	132, 246
BmsI	GCATC	3 cut(s)	578, 699, 788
BoxI	GACNNNNGTC	1 cut(s)	461
BplI	GAGNNNNNCTC	2 cut(s)	550, 582
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	126, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	750
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	629
BseCI	ATCGAT	1 cut(s)	761
BseDI	CCNNGG	2 cut(s)	126, 240
BseGI	GGATG	3 cut(s)	443, 593, 803
BseLI	CCNNNNNNNGG	1 cut(s)	750
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	2 cut(s)	267, 606
BseNI	ACTGG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	761
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	750
BsmAI	GTCTC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	7 cut(s)	101, 244, 517, 652, 740, 762, 769
BspACI	CCGC	2 cut(s)	309, 801
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	268, 607
BspDI	ATCGAT	1 cut(s)	761
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	2 cut(s)	132, 246
BspPI	GGATC	5 cut(s)	239, 252, 525, 735, 757
BspT104I	TTCGAA	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	126, 240
BssMI	GATC	7 cut(s)	101, 244, 517, 652, 740, 762, 769
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	50, 258
BstDEI	CTNAG	3 cut(s)	276, 615, 749
BstF5I	GGATG	3 cut(s)	443, 593, 803
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	7 cut(s)	104, 247, 520, 655, 743, 765, 772
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	7 cut(s)	101, 244, 517, 652, 740, 762, 769
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNSI	RCATGY	2 cut(s)	52, 260
BstPAI	GACNNNNGTC	1 cut(s)	461
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	1 cut(s)	467
BstX2I	RGATCY	3 cut(s)	244, 517, 740
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	3 cut(s)	244, 517, 740
Bsu15I	ATCGAT	1 cut(s)	761
BsuI	GTATCC	3 cut(s)	247, 442, 480
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	761
BtsCI	GGATG	3 cut(s)	443, 593, 803
Cac8I	GCNNGC	2 cut(s)	50, 258
CfoI	GCGC	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	761
Csp6I	GTAC	3 cut(s)	306, 341, 423
CviAII	CATG	5 cut(s)	49, 257, 265, 584, 794
CviJI	RGCY	5 cut(s)	218, 275, 642, 684, 788
CviKI_1	RGCY	5 cut(s)	218, 275, 642, 684, 788
CviQI	GTAC	3 cut(s)	306, 341, 423
DdeI	CTNAG	3 cut(s)	276, 615, 749
DpnI	GATC	7 cut(s)	103, 246, 519, 654, 742, 764, 771
DpnII	GATC	7 cut(s)	101, 244, 517, 652, 740, 762, 769
DraIII	CACNNNGTG	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	5 cut(s)	52, 260, 268, 587, 797
FatI	CATG	5 cut(s)	48, 256, 264, 583, 793
FauNDI	CATATG	1 cut(s)	118
FokI	GGATG	3 cut(s)	430, 600, 810
FspBI	CTAG	2 cut(s)	312, 696
GlaI	GCGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	5 cut(s)	52, 260, 268, 587, 797
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	5 cut(s)	161, 322, 440, 506, 719
HphI	GGTGA	3 cut(s)	280, 683, 833
Hpy166II	GTNNAC	3 cut(s)	92, 333, 598
Hpy188I	TCNGA	3 cut(s)	172, 244, 740
Hpy188III	TCNNGA	6 cut(s)	17, 31, 158, 326, 696, 782
Hpy8I	GTNNAC	3 cut(s)	92, 333, 598
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	5 cut(s)	48, 52, 333, 489, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	3 cut(s)	276, 615, 749
Hsp92II	CATG	5 cut(s)	52, 260, 268, 587, 797
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	7 cut(s)	101, 244, 517, 652, 740, 762, 769
LpnPI	CCDG	8 cut(s)	57, 137, 148, 446, 627, 675, 694, 719
LweI	GCATC	3 cut(s)	578, 699, 788
MaeI	CTAG	2 cut(s)	312, 696
MaeIII	GTNAC	2 cut(s)	67, 671
MalI	GATC	7 cut(s)	103, 246, 519, 654, 742, 764, 771
MboI	GATC	7 cut(s)	101, 244, 517, 652, 740, 762, 769
MboII	GAAGA	2 cut(s)	386, 463
MflI	RGATCY	3 cut(s)	244, 517, 740
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	5 cut(s)	23, 173, 205, 368, 497
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	2 cut(s)	497, 599
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	255, 269
Mva1269I	GAATGC	1 cut(s)	147
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	7 cut(s)	101, 244, 517, 652, 740, 762, 769
NlaIII	CATG	5 cut(s)	52, 260, 268, 587, 797
NlaIV	GGNNCC	2 cut(s)	132, 246
NmuCI	GTSAC	1 cut(s)	671
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	2 cut(s)	52, 260
NspV	TTCGAA	1 cut(s)	372
PaeI	GCATGC	2 cut(s)	52, 260
PctI	GAATGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	4 cut(s)	161, 322, 440, 719
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PshAI	GACNNNNGTC	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	132, 246
PsuI	RGATCY	3 cut(s)	244, 517, 740
PvuI	CGATCG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	307, 342, 424
RsaNI	GTAC	3 cut(s)	306, 341, 423
RseI	CAYNNNNRTG	2 cut(s)	255, 269
SaqAI	TTAA	1 cut(s)	26
Sau3AI	GATC	7 cut(s)	101, 244, 517, 652, 740, 762, 769
SchI	GAGTC	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	3 cut(s)	578, 699, 788
SfuI	TTCGAA	1 cut(s)	372
SmiMI	CAYNNNNRTG	2 cut(s)	255, 269
SphI	GCATGC	2 cut(s)	52, 260
Sse9I	AATT	5 cut(s)	23, 173, 205, 368, 497
SsiI	CCGC	2 cut(s)	309, 801
SspMI	CTAG	2 cut(s)	312, 696
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	4 cut(s)	30, 63, 372, 761
TasI	AATT	5 cut(s)	23, 173, 205, 368, 497
TfiI	GAWTC	4 cut(s)	161, 322, 440, 719
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	5 cut(s)	36, 377, 432, 650, 747
VneI	GTGCAC	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	1 cut(s)	368
XbaI	TCTAGA	1 cut(s)	695
XceI	RCATGY	2 cut(s)	52, 260
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	2 cut(s)	312, 696
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.