Rh1CG343000

Ubiquitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010633
Physical Location & Seq
Forward (+)
61738831 .. 61743251
4421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG343000.1

Sequence Viewer

Length: 1005 bp
ATGAAAAGCTTGAATAAAGATCGAAGTTTGTTTGTGGATGACTACACCAGCTTCTCTGCTTCTACTCTAGATATTCCCAGATGCTTGGGGAATCACATTTTTTTCTCATCAGATCCATACTTAGGGTTTCATCAATCCAAGATCAAGTTGTTCGTGAGGCTTCTCATGGATGCGGAGGTGGTAGTGGTGGAGGTGATAGTCAGCGAACACGATGAGGTAGGGGATCTCAGGGAGCATCTACAGGTGGCAGAATTCCTTCTCCCTCCACATTATCTCTTTATGCATAAAATGTCTGTGATGTTCGAGAAAAGATCATTCAGCTGGCATGACGTTTTCGAAGGTCATACTATAGATGTAGTTCCGGTGCCGCAAGTAGTGCTGGAACAAGAAAAAGATGTAAAGGTGTTGGTGACCTTCCGTGGAAGTAAAAATTACTCTGAGAAGGATTTTGACACGAGAAAAATAAGTCGTCTCTTACCCAATTCCTGGTTCGATTCCGGCGTACTGCGTATGCCTGGGGTGTTCCATGAACTAATGACATCTAGTGGTCCACAGTTTACTCACTTGGAGATCGAGAGGAGGTGTAATACGTACATTAACATATGCAGCGGTGATACAGTACAAATTTTTAGTTTTTCAGGACTAAAATCATTACGGTCGTTCAAGGTGAATGTGATTGTGGATAATAAGGGAACTGTGGTGGATATGAATCCTTTTCGTAAGGTGAAAAGGCTGAGGGAGGAGCTGAAGGAGAAGAAGCTACATCTCCCGCGACGGTATTACTTCATCCTGCTTGTCCAAAATGCTCAATATCTTATGGACGAAGAAGTGGAATTTGGGCCGTATTACTTTACCCATCTTGACAATGTGATGTACGATGAAGATGGCACGATCAAAGTTGGCAATACGATTACTGTTAATATAAAGCAGAACATGTATGCACAATTGTTGCCTCTTGCTTTGCCTGCTCCACTAATCCCTGGTATGGGAGATTGGGAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

334

Amino Acids

38.76

Weight (kDa)

6.07

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 486
AccII CGCG 1 cut(s) 772
AciI CCGC 4 cut(s) 173, 368, 609, 770
AclWI GGATC 2 cut(s) 107, 231
AcsI RAATTY 3 cut(s) 251, 624, 833
AcuI CTGAAG 1 cut(s) 767
AfaI GTAC 4 cut(s) 504, 593, 621, 875
AfiI CCNNNNNNNGG 4 cut(s) 122, 486, 985, 986
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 2 cut(s) 13, 664
AjnI CCWGG 3 cut(s) 485, 514, 979
AjuI GAANNNNNNNTTGG 4 cut(s) 473, 505, 819, 851
AluBI AGCT 5 cut(s) 9, 51, 321, 745, 760
AluI AGCT 5 cut(s) 9, 51, 321, 745, 760
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 2 cut(s) 107, 231
AoxI GGCC 1 cut(s) 839
ApeKI GCWGC 1 cut(s) 606
ApoI RAATTY 3 cut(s) 251, 624, 833
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 548, 839
AsuHPI GGTGA 5 cut(s) 205, 421, 623, 679, 736
AsuII TTCGAA 1 cut(s) 336
AvaII GGWCC 1 cut(s) 548
BanI GGYRCC 1 cut(s) 364
BauI CACGAG 1 cut(s) 454
BbvCI CCTCAGC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 618
BccI CCATC 2 cut(s) 864, 878
BceAI ACGGC 1 cut(s) 826
BciT130I CCWGG 3 cut(s) 487, 516, 981
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 2 cut(s) 68, 543
BfmI CTRYAG 2 cut(s) 239, 348
BisI GCNGC 2 cut(s) 368, 607
BlsI GCNGC 2 cut(s) 369, 608
Bme1390I CCNGG 3 cut(s) 487, 516, 981
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 548, 839
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 3 cut(s) 487, 516, 981
BmsI GCATC 3 cut(s) 71, 160, 244
Bpu10I CCTNAGC 1 cut(s) 734
Bpu14I TTCGAA 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 708
BsaJI CCNNGG 3 cut(s) 418, 515, 979
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 486, 985, 986
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 3 cut(s) 487, 516, 981
BseDI CCNNGG 3 cut(s) 418, 515, 979
BseGI GGATG 3 cut(s) 43, 175, 786
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 4 cut(s) 122, 486, 985, 986
BseMII CTCAG 3 cut(s) 241, 429, 725
BseRI GAGGAG 2 cut(s) 592, 755
BseXI GCAGC 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 659
BshFI GGCC 1 cut(s) 841
BshNI GGYRCC 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 659
BsiSI CCGG 2 cut(s) 362, 498
BslI CCNNNNNNNGG 4 cut(s) 122, 486, 985, 986
BsmAI GTCTC 1 cut(s) 476
BsmBI CGTCTC 1 cut(s) 476
BsnI GGCC 1 cut(s) 841
Bsp119I TTCGAA 1 cut(s) 336
Bsp143I GATC 7 cut(s) 19, 112, 141, 223, 311, 570, 891
BspACI CCGC 4 cut(s) 173, 368, 609, 770
BspANI GGCC 1 cut(s) 841
BspCNI CTCAG 3 cut(s) 240, 430, 726
BspFNI CGCG 1 cut(s) 772
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 2 cut(s) 107, 231
BspT104I TTCGAA 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 418, 515, 979
BssMI GATC 7 cut(s) 19, 112, 141, 223, 311, 570, 891
BssSI CACGAG 1 cut(s) 454
Bst2BI CACGAG 1 cut(s) 454
Bst2UI CCWGG 3 cut(s) 487, 516, 981
Bst4CI ACNGT 6 cut(s) 555, 619, 657, 697, 777, 916
BstAPI GCANNNNNTGC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 591
BstBI TTCGAA 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 323, 966
BstDEI CTNAG 4 cut(s) 121, 227, 438, 734
BstDSI CCRYGG 1 cut(s) 418
BstEII GGTNACC 1 cut(s) 409
BstF5I GGATG 3 cut(s) 43, 175, 786
BstFNI CGCG 1 cut(s) 772
BstKTI GATC 7 cut(s) 22, 115, 144, 226, 314, 573, 894
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 7 cut(s) 19, 112, 141, 223, 311, 570, 891
BstMCI CGRYCG 1 cut(s) 659
BstMWI GCNNNNNNNGC 2 cut(s) 376, 965
BstNI CCWGG 3 cut(s) 487, 516, 981
BstNSI RCATGY 1 cut(s) 937
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 3 cut(s) 485, 514, 979
BstSFI CTRYAG 2 cut(s) 239, 348
BstSNI TACGTA 1 cut(s) 591
BstUI CGCG 1 cut(s) 772
BstV1I GCAGC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 112, 223
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 2 cut(s) 112, 223
BsuRI GGCC 1 cut(s) 841
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 3 cut(s) 43, 175, 786
Cac8I GCNNGC 2 cut(s) 323, 966
Cfr13I GGNCC 2 cut(s) 548, 839
Csp6I GTAC 4 cut(s) 503, 592, 620, 874
CviAII CATG 4 cut(s) 166, 326, 527, 934
CviJI RGCY 8 cut(s) 9, 51, 160, 321, 733, 745, 760, 841
CviKI_1 RGCY 8 cut(s) 9, 51, 160, 321, 733, 745, 760, 841
CviQI GTAC 4 cut(s) 503, 592, 620, 874
DdeI CTNAG 4 cut(s) 121, 227, 438, 734
DpnI GATC 7 cut(s) 21, 114, 143, 225, 313, 572, 893
DpnII GATC 7 cut(s) 19, 112, 141, 223, 311, 570, 891
Eco105I TACGTA 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 485, 514, 979
EcoT22I ATGCAT 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 4 cut(s) 169, 329, 530, 937
FatI CATG 4 cut(s) 165, 325, 526, 933
FauI CCCGC 1 cut(s) 777
FauNDI CATATG 1 cut(s) 602
Fnu4HI GCNGC 2 cut(s) 368, 607
FokI GGATG 3 cut(s) 50, 182, 773
Fsp4HI GCNGC 2 cut(s) 368, 607
FspBI CTAG 2 cut(s) 68, 543
GluI GCNGC 2 cut(s) 368, 607
HaeIII GGCC 1 cut(s) 841
HapII CCGG 2 cut(s) 362, 498
Hin1II CATG 4 cut(s) 169, 329, 530, 937
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 91, 494, 709
HpaII CCGG 2 cut(s) 362, 498
HphI GGTGA 5 cut(s) 205, 421, 623, 679, 736
Hpy166II GTNNAC 2 cut(s) 551, 558
Hpy188I TCNGA 2 cut(s) 112, 439
Hpy188III TCNNGA 6 cut(s) 68, 154, 304, 574, 639, 860
Hpy8I GTNNAC 2 cut(s) 551, 558
Hpy99I CGWCG 1 cut(s) 777
HpyAV CCTTC 5 cut(s) 266, 332, 424, 436, 742
HpyCH4III ACNGT 6 cut(s) 555, 619, 657, 697, 777, 916
HpyCH4IV ACGT 2 cut(s) 330, 590
HpyCH4V TGCA 3 cut(s) 283, 606, 941
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 965
HpyF3I CTNAG 4 cut(s) 121, 227, 438, 734
HpySE526I ACGT 2 cut(s) 330, 590
Hsp92II CATG 4 cut(s) 169, 329, 530, 937
Kzo9I GATC 7 cut(s) 19, 112, 141, 223, 311, 570, 891
LmnI GCTCC 3 cut(s) 232, 742, 973
Lsp1109I GCAGC 1 cut(s) 618
LweI GCATC 3 cut(s) 71, 160, 244
MaeI CTAG 2 cut(s) 68, 543
MaeII ACGT 2 cut(s) 330, 590
MaeIII GTNAC 1 cut(s) 409
MalI GATC 7 cut(s) 21, 114, 143, 225, 313, 572, 893
MboI GATC 7 cut(s) 19, 112, 141, 223, 311, 570, 891
MboII GAAGA 3 cut(s) 766, 836, 893
MfeI CAATTG 1 cut(s) 944
MflI RGATCY 2 cut(s) 112, 223
MluCI AATT 6 cut(s) 251, 430, 481, 624, 833, 944
Mph1103I ATGCAT 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 597, 918
MspA1I CMGCKG 2 cut(s) 321, 609
MspI CCGG 2 cut(s) 362, 498
MspR9I CCNGG 3 cut(s) 487, 516, 981
MunI CAATTG 1 cut(s) 944
MvaI CCWGG 3 cut(s) 487, 516, 981
MvnI CGCG 1 cut(s) 772
MwoI GCNNNNNNNGC 2 cut(s) 376, 965
NdeI CATATG 1 cut(s) 602
NdeII GATC 7 cut(s) 19, 112, 141, 223, 311, 570, 891
NlaIII CATG 4 cut(s) 169, 329, 530, 937
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 937
NspV TTCGAA 1 cut(s) 336
PciI ACATGT 1 cut(s) 933
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 91, 494, 709
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 2 cut(s) 369, 608
Ppu21I YACGTR 1 cut(s) 591
PscI ACATGT 1 cut(s) 933
Psp6I CCWGG 3 cut(s) 485, 514, 979
PspEI GGTNACC 1 cut(s) 409
PspGI CCWGG 3 cut(s) 485, 514, 979
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 2 cut(s) 548, 839
PsuI RGATCY 2 cut(s) 112, 223
PvuII CAGCTG 1 cut(s) 321
RsaI GTAC 4 cut(s) 504, 593, 621, 875
RsaNI GTAC 4 cut(s) 503, 592, 620, 874
SaqAI TTAA 2 cut(s) 597, 918
SatI GCNGC 2 cut(s) 368, 607
Sau3AI GATC 7 cut(s) 19, 112, 141, 223, 311, 570, 891
Sau96I GGNCC 2 cut(s) 548, 839
ScrFI CCNGG 3 cut(s) 487, 516, 981
SfaNI GCATC 3 cut(s) 71, 160, 244
SfcI CTRYAG 2 cut(s) 239, 348
SfuI TTCGAA 1 cut(s) 336
SinI GGWCC 1 cut(s) 548
SnaBI TACGTA 1 cut(s) 591
Sse9I AATT 6 cut(s) 251, 430, 481, 624, 833, 944
SsiI CCGC 4 cut(s) 173, 368, 609, 770
SspMI CTAG 2 cut(s) 68, 543
StyD4I CCNGG 3 cut(s) 485, 514, 979
TaaI ACNGT 6 cut(s) 555, 619, 657, 697, 777, 916
TaiI ACGT 2 cut(s) 333, 593
TaqI TCGA 5 cut(s) 22, 303, 336, 492, 573
TasI AATT 6 cut(s) 251, 430, 481, 624, 833, 944
TatI WGTACW 1 cut(s) 619
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 3 cut(s) 91, 494, 709
Tru1I TTAA 2 cut(s) 597, 918
Tru9I TTAA 2 cut(s) 597, 918
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 606
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 6 cut(s) 17, 119, 543, 722, 775, 894
TspGWI ACGGA 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 3 cut(s) 251, 624, 833
XbaI TCTAGA 1 cut(s) 67
XceI RCATGY 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 68, 543
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.