Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Reverse (-)

7812515 .. 7813714

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027034

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTTACTCGATTTCGTGCTATTTGTCAACAAATCGTCTATTCCTCCATATGAGATCAAGGTTCCCATCAAAGTTCGCATTCAGGGTCAAGATTCGGTATACACATTCGTCAAGAGCATTGTGTATCATCTTGTACAACCAGCTTCAAAAGCTTCTAGTTCCAGTTCAATGGAATGTGTTGTTAAAGTCCGAGACGTTGAACCCGAAAATCGTTGTCTTTTGTTACATCCACTTTCCACCTCGTTGCCTTTAGAGCCGAATTCAGAGTCGTTTCCAGATGAATTAAACGTGTTGGAATTTCAGGTATTGGAATTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCCGAACACAAGGTGGTCGTATCCTCGGATCCTCATTGGCAGGCGCTCATGGTGATGGCTGAGGCAAAACTATACTACGGGGATTTCAGTACCGCTAGTGTTGAGATTCAAGAGTGCACCTTAGTACGGGATATACTCTTTGAACACCAAGAATTCGAAGATGTTATTTTTCATAAGAGCAAGTTCTATGTTGTTGCCAGGAATGGTACTACTGTATCCATTGATTCTTCCTTGAAGATGACACAGGCCTCGTATCCAACAACTTGTTCTTGCAGTAAGAAATTGGTGGAGTCATTGGGGGATCTACTTTTAGTTGTGAAATGTGCGAGGCCTTTGAGGTGGAGATGTCTTCATAATCCAACTCATCATGGATGCAAGGTTTACAAGTTGAACGAACCTGAAAAGCAATGGGTTGAAATGAAAAGCTTGAATAAAGATCGAAGTTTGTTTGTGGGTGACTACACCAGCTTCTCTGCTTCTACTCTAGATATTCCCAGATGCTTGGGGAATCACATTTTTTTCTCATCAGATCCATACTTAGGGTTTCATCGATCCAAGATCAAGTTGTACGTGAGGCTTCTCATGGATGAGGAGGTGGTAGTGGTGGAGGTGATAGTCAGCAAACACGATGAGGTAGGGGATCTAAGGGAGCATCTACAGGTGGCAGACTTCCTTCTCCCTCCACATTATCTCTTTATGCATAAAATGTCTGTGATGTTTGAGATAACTCCGTTCAGATGGCATAACGTTCTCGAAGGTGATACTATAGATGTAGTTCCAGTGCCGCAAGTGCTGGAACAAGAAAAAGATGTAAAGGTGTTGGTGACGTCCTTCCGTGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

400

Amino Acids

45.7

Weight (kDa)

6.16

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	55 - 303	5e-31	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1184
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	2 cut(s)	447, 1139
AclI	AACGTT	1 cut(s)	1101
AclWI	GGATC	6 cut(s)	377, 390, 663, 878, 900, 1002
AcsI	RAATTY	3 cut(s)	259, 296, 506
AcyI	GRCGYC	1 cut(s)	1181
AdeI	CACNNNGTG	1 cut(s)	367
AfaI	GTAC	5 cut(s)	135, 445, 480, 562, 923
AfiI	CCNNNNNNNGG	3 cut(s)	480, 893, 1191
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	9 cut(s)	147, 168, 200, 464, 497, 589, 745, 770, 784
AjnI	CCWGG	1 cut(s)	551
AjuI	GAANNNNNNNTTGG	2 cut(s)	604, 636
AluBI	AGCT	4 cut(s)	143, 152, 780, 822
AluI	AGCT	4 cut(s)	143, 152, 780, 822
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	186
Alw44I	GTGCAC	1 cut(s)	469
AlwI	GGATC	6 cut(s)	377, 390, 663, 878, 900, 1002
AoxI	GGCC	3 cut(s)	354, 600, 683
ApaLI	GTGCAC	1 cut(s)	469
ApoI	RAATTY	3 cut(s)	259, 296, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspLEI	GCGC	1 cut(s)	400
AsuHPI	GGTGA	5 cut(s)	418, 821, 976, 1124, 1189
AsuII	TTCGAA	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	473
BaeI	ACNNNNGTAYC	4 cut(s)	552, 552, 585, 585
BamHI	GGATCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	414
BccI	CCATC	3 cut(s)	74, 403, 1086
BciT130I	CCWGG	1 cut(s)	553
BciVI	GTATCC	3 cut(s)	385, 580, 618
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	3 cut(s)	156, 450, 839
BfmI	CTRYAG	2 cut(s)	1010, 1119
BfoI	RGCGCY	1 cut(s)	401
BfuI	GTATCC	3 cut(s)	385, 580, 618
BisI	GCNGC	1 cut(s)	1139
BlsI	GCNGC	1 cut(s)	1140
Bme1390I	CCNGG	1 cut(s)	553
BmiI	GGNNCC	2 cut(s)	63, 384
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	3 cut(s)	716, 842, 1015
BpiI	GAAGAC	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	904
BsaAI	YACGTR	1 cut(s)	925
BsaHI	GRCGYC	1 cut(s)	1181
BsaJI	CCNNGG	2 cut(s)	378, 1189
Bsc4I	CCNNNNNNNGG	3 cut(s)	480, 893, 1191
Bse1I	ACTGG	2 cut(s)	162, 1133
Bse3DI	GCAATG	1 cut(s)	767
BseBI	CCWGG	1 cut(s)	553
BseCI	ATCGAT	1 cut(s)	904
BseDI	CCNNGG	2 cut(s)	378, 1189
BseGI	GGATG	3 cut(s)	226, 731, 946
BseLI	CCNNNNNNNGG	3 cut(s)	480, 893, 1191
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	162, 1133
BseRI	GAGGAG	1 cut(s)	959
BseSI	GKGCMC	1 cut(s)	473
BshFI	GGCC	3 cut(s)	356, 602, 685
BshVI	ATCGAT	1 cut(s)	904
BsiHKAI	GWGCWC	1 cut(s)	473
BslI	CCNNNNNNNGG	3 cut(s)	480, 893, 1191
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	356, 602, 685
Bsp119I	TTCGAA	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	8 cut(s)	54, 382, 655, 790, 883, 905, 912, 994
BspACI	CCGC	2 cut(s)	447, 1139
BspANI	GGCC	3 cut(s)	356, 602, 685
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	63, 384
BspPI	GGATC	6 cut(s)	377, 390, 663, 878, 900, 1002
BspT104I	TTCGAA	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	767
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	162, 1133
BssECI	CCNNGG	2 cut(s)	378, 1189
BssMI	GATC	8 cut(s)	54, 382, 655, 790, 883, 905, 912, 994
BssNAI	GTATAC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	1181
Bst1107I	GTATAC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	553
Bst4CI	ACNGT	1 cut(s)	568
BstACI	GRCGYC	1 cut(s)	1181
BstAUI	TGTACA	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	925
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	4 cut(s)	414, 475, 892, 998
BstDSI	CCRYGG	1 cut(s)	1189
BstF5I	GGATG	3 cut(s)	226, 731, 946
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	8 cut(s)	57, 385, 658, 793, 886, 908, 915, 997
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	8 cut(s)	54, 382, 655, 790, 883, 905, 912, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 253, 1144
BstNI	CCWGG	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	2 cut(s)	1010, 1119
BstSLI	GKGCMC	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	4 cut(s)	382, 655, 883, 994
BstXI	CCANNNNNNTGG	2 cut(s)	169, 856
BstYI	RGATCY	4 cut(s)	382, 655, 883, 994
BstZ17I	GTATAC	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	904
BsuI	GTATCC	3 cut(s)	385, 580, 618
BsuRI	GGCC	3 cut(s)	356, 602, 685
BsuTUI	ATCGAT	1 cut(s)	904
BtgI	CCRYGG	1 cut(s)	1189
BtsCI	GGATG	3 cut(s)	226, 731, 946
BtsIMutI	CAGTG	1 cut(s)	1140
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	904
Csp6I	GTAC	5 cut(s)	134, 444, 479, 561, 922
CviAII	CATG	3 cut(s)	403, 722, 937
CviQI	GTAC	5 cut(s)	134, 444, 479, 561, 922
DdeI	CTNAG	4 cut(s)	414, 475, 892, 998
DpnI	GATC	8 cut(s)	56, 384, 657, 792, 885, 907, 914, 996
DpnII	GATC	8 cut(s)	54, 382, 655, 790, 883, 905, 912, 994
DraIII	CACNNNGTG	1 cut(s)	367
Eco147I	AGGCCT	2 cut(s)	602, 685
EcoRI	GAATTC	2 cut(s)	259, 506
EcoRII	CCWGG	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	1056
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	3 cut(s)	406, 725, 940
FatI	CATG	3 cut(s)	402, 721, 936
FauNDI	CATATG	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	1139
FokI	GGATG	3 cut(s)	213, 738, 953
Fsp4HI	GCNGC	1 cut(s)	1139
FspBI	CTAG	3 cut(s)	156, 450, 839
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	1139
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	3 cut(s)	356, 602, 685
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	1181
Hin1II	CATG	3 cut(s)	406, 725, 940
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	2 cut(s)	150, 778
HinfI	GANTC	6 cut(s)	92, 266, 460, 578, 644, 862
HphI	GGTGA	5 cut(s)	418, 821, 976, 1124, 1189
Hpy166II	GTNNAC	4 cut(s)	28, 100, 471, 736
Hpy188I	TCNGA	5 cut(s)	191, 265, 382, 883, 1091
Hpy188III	TCNNGA	6 cut(s)	89, 112, 275, 464, 839, 1106
Hpy8I	GTNNAC	4 cut(s)	28, 100, 471, 736
HpyAV	CCTTC	3 cut(s)	1037, 1103, 1195
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	5 cut(s)	195, 288, 924, 1101, 1181
HpyCH4V	TGCA	4 cut(s)	471, 627, 729, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 253, 1144
HpyF3I	CTNAG	4 cut(s)	414, 475, 892, 998
HpySE526I	ACGT	5 cut(s)	195, 288, 924, 1101, 1181
Hsp92I	GRCGYC	1 cut(s)	1181
Hsp92II	CATG	3 cut(s)	406, 725, 940
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	8 cut(s)	54, 382, 655, 790, 883, 905, 912, 994
LmnI	GCTCC	1 cut(s)	1003
LweI	GCATC	3 cut(s)	716, 842, 1015
MaeI	CTAG	3 cut(s)	156, 450, 839
MaeII	ACGT	5 cut(s)	195, 288, 924, 1101, 1181
MaeIII	GTNAC	4 cut(s)	3, 222, 809, 1177
MalI	GATC	8 cut(s)	56, 384, 657, 792, 885, 907, 914, 996
MboI	GATC	8 cut(s)	54, 382, 655, 790, 883, 905, 912, 994
MboII	GAAGA	4 cut(s)	524, 573, 601, 695
MflI	RGATCY	4 cut(s)	382, 655, 883, 994
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	7 cut(s)	259, 281, 296, 311, 343, 506, 635
MlyI	GAGTC	2 cut(s)	275, 653
MmeI	TCCRAC	3 cut(s)	273, 635, 737
Mph1103I	ATGCAT	1 cut(s)	1056
MseI	TTAA	2 cut(s)	183, 284
MslI	CAYNNNNRTG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	553
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	553
MwoI	GCNNNNNNNGC	3 cut(s)	149, 253, 1144
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	8 cut(s)	54, 382, 655, 790, 883, 905, 912, 994
NlaIII	CATG	3 cut(s)	406, 725, 940
NlaIV	GGNNCC	2 cut(s)	63, 384
NmuCI	GTSAC	2 cut(s)	809, 1177
NsiI	ATGCAT	1 cut(s)	1056
NspV	TTCGAA	1 cut(s)	510
PceI	AGGCCT	2 cut(s)	602, 685
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	92, 460, 578, 862
PkrI	GCNGC	1 cut(s)	1140
PleI	GAGTC	2 cut(s)	274, 652
PpsI	GAGTC	2 cut(s)	274, 652
Ppu21I	YACGTR	1 cut(s)	925
Psp1406I	AACGTT	1 cut(s)	1101
Psp6I	CCWGG	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	551
PspN4I	GGNNCC	2 cut(s)	63, 384
PsuI	RGATCY	4 cut(s)	382, 655, 883, 994
RsaI	GTAC	5 cut(s)	135, 445, 480, 562, 923
RsaNI	GTAC	5 cut(s)	134, 444, 479, 561, 922
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	183, 284
SatI	GCNGC	1 cut(s)	1139
Sau3AI	GATC	8 cut(s)	54, 382, 655, 790, 883, 905, 912, 994
SchI	GAGTC	2 cut(s)	275, 653
ScrFI	CCNGG	1 cut(s)	553
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	3 cut(s)	716, 842, 1015
SfcI	CTRYAG	2 cut(s)	1010, 1119
SfuI	TTCGAA	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	7 cut(s)	259, 281, 296, 311, 343, 506, 635
SseBI	AGGCCT	2 cut(s)	602, 685
SsiI	CCGC	2 cut(s)	447, 1139
SspMI	CTAG	3 cut(s)	156, 450, 839
StuI	AGGCCT	2 cut(s)	602, 685
StyD4I	CCNGG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	5 cut(s)	198, 291, 927, 1104, 1184
TaqI	TCGA	5 cut(s)	9, 510, 793, 904, 1107
TasI	AATT	7 cut(s)	259, 281, 296, 311, 343, 506, 635
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	1141
TfiI	GAWTC	4 cut(s)	92, 460, 578, 862
Tru1I	TTAA	2 cut(s)	183, 284
Tru9I	TTAA	2 cut(s)	183, 284
TscAI	CASTG	1 cut(s)	1140
TseFI	GTSAC	2 cut(s)	809, 1177
Tsp45I	GTSAC	2 cut(s)	809, 1177
TspDTI	ATGAA	5 cut(s)	294, 515, 695, 788, 890
TspGWI	ACGGA	2 cut(s)	1074, 1178
TspRI	CASTG	1 cut(s)	1140
VneI	GTGCAC	1 cut(s)	469
XapI	RAATTY	3 cut(s)	259, 296, 506
XbaI	TCTAGA	1 cut(s)	838
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	3 cut(s)	156, 450, 839
ZraI	GACGTC	1 cut(s)	1182
Zsp2I	ATGCAT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.