Rh1CG342100

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010633
Physical Location & Seq
Reverse (-)
61667458 .. 61669849
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG342100.1

Sequence Viewer

Length: 1146 bp
ATGCTTGGGGAATCACATTTTTTTCTCATCAGATCCATACTTAGGGTTTCATCGATCCAAGATCAAGTTGTTCGTGAGGCTTCTCATGGATGCGGAGGTGGTAGTGGTGGAGGTGATTATGAGGTAGGGGATCTCAGGGAGCATCTACAGGTGGCAGACTTCCTTCTCCCTCCACATTATCTCTTTATGCATAAAATGTCTGTGATGTTCGAGAAAAGATCATTCAGCTGGCATGACGTTTTCAAAGGTCATACTATAAATGTAGTTCCGGTACCGCAAGTGCTGGAACAAGAAAAAGATGTAAAGGTGTTGGTGACCTTCCGTGGAAGTAAAAATTACTCTGAGAAGGATTTTGACACGGGAAAAATAAGTCGTCTCTTACCCAATTCCTGGTTCAATTCCTGCGTACTGCGTATGCCTGGGGTGTTCCATGAACTAATGACATCTAGTGGTCCACAGTTTACTCACTTGCAGATCGAGAGGAGGTGTAATACGTACACTAACATATGCAGTGGTGATACAGTACAAATTGTTAGTTTTTCAGAACTAAAATCATTACGGTCGTTCAAGGTGAATGTGATTGTGGATAATAAGGGAACTGTGGTGGATATGAATCCTTTTGGTAAGGTGAAAAGGCTGAGGGAGGAGCTGAAGGAGAAGAAGCTACATCTCCCGCGACAGTATTACTTCATCCTGCTCGTCCAAAATGCTCAATATCTTATGGACGAAGAAGTGGAATTTGGATATTACTTTACCCATCTTGACGATGTGATGTACGATGATGATGGCACGATCAAAGTTGGCAATACGATTACTGTTAATATAAAGGTTTGTCCATACATGATAATCAATAAGAACAAGAGAAGAAGGTTACGTACGTTACAGCCTGTAGGTTTATCCGTGAATACACCGGTAAAGTGGATGGTGAAGGACAGAATTGAAGCTCAGAATGAGGTTAGGGTTAAGGAGAAGGAAGAGAAAGAAGTTATAGCACAGCAGAACATGTATGCACAATTGTTGCCTCTTGCTTTGCCTGCTCCACTAATCCCTGGTATGGGGGGTATAGGAGGAGGGTATGGTCCTCCGCCGCCTATTGGAGGAATGGCAATGCCTCCGTTGCCATGGCATGCCACCAATGGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

381

Amino Acids

43.29

Weight (kDa)

8.63

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 390
AccII CGCG 1 cut(s) 676
AciI CCGC 5 cut(s) 93, 275, 674, 1085, 1088
AclWI GGATC 3 cut(s) 27, 49, 138
AcsI RAATTY 1 cut(s) 737
AcuI CTGAAG 1 cut(s) 671
AfaI GTAC 6 cut(s) 273, 408, 497, 525, 776, 877
AfiI CCNNNNNNNGG 7 cut(s) 42, 390, 1054, 1055, 1094, 1097, 1137
AflIII ACRYGT 1 cut(s) 1002
AgeI ACCGGT 1 cut(s) 910
AgsI TTSAA 4 cut(s) 244, 397, 568, 941
AjnI CCWGG 3 cut(s) 389, 418, 1048
AjuI GAANNNNNNNTTGG 4 cut(s) 377, 409, 723, 755
AluBI AGCT 4 cut(s) 228, 649, 664, 944
AluI AGCT 4 cut(s) 228, 649, 664, 944
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 3 cut(s) 27, 49, 138
ApoI RAATTY 1 cut(s) 737
AsiGI ACCGGT 1 cut(s) 910
Asp718I GGTACC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 452, 1079
AsuHPI GGTGA 6 cut(s) 125, 325, 527, 583, 640, 937
AvaII GGWCC 2 cut(s) 452, 1079
BanI GGYRCC 1 cut(s) 271
BarI GAAGNNNNNNTAC 2 cut(s) 859, 891
BbvCI CCTCAGC 1 cut(s) 638
BccI CCATC 3 cut(s) 765, 779, 916
BciT130I CCWGG 3 cut(s) 391, 420, 1050
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 2 cut(s) 146, 888
BisI GCNGC 1 cut(s) 1088
BlsI GCNGC 1 cut(s) 1089
Bme1390I CCNGG 3 cut(s) 391, 420, 1050
Bme18I GGWCC 2 cut(s) 452, 1079
BmgT120I GGNCC 2 cut(s) 452, 1079
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 3 cut(s) 391, 420, 1050
BmsI GCATC 2 cut(s) 80, 151
Bpu10I CCTNAGC 1 cut(s) 638
Bsa29I ATCGAT 1 cut(s) 53
BsaAI YACGTR 2 cut(s) 495, 875
BsaBI GATNNNNATC 1 cut(s) 612
BsaJI CCNNGG 4 cut(s) 322, 419, 1048, 1121
BsaWI WCCGGW 2 cut(s) 268, 910
Bsc4I CCNNNNNNNGG 7 cut(s) 42, 390, 1054, 1055, 1094, 1097, 1137
Bse118I RCCGGY 1 cut(s) 910
Bse3DI GCAATG 1 cut(s) 1113
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 3 cut(s) 391, 420, 1050
BseCI ATCGAT 1 cut(s) 53
BseDI CCNNGG 4 cut(s) 322, 419, 1048, 1121
BseGI GGATG 3 cut(s) 95, 690, 927
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 7 cut(s) 42, 390, 1054, 1055, 1094, 1097, 1137
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 4 cut(s) 148, 333, 629, 959
BseRI GAGGAG 3 cut(s) 496, 659, 1083
Bsh1236I CGCG 1 cut(s) 676
Bsh1285I CGRYCG 1 cut(s) 563
BshNI GGYRCC 1 cut(s) 271
BshTI ACCGGT 1 cut(s) 910
BshVI ATCGAT 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 563
BsiSI CCGG 2 cut(s) 269, 911
BsiWI CGTACG 1 cut(s) 875
BslI CCNNNNNNNGG 7 cut(s) 42, 390, 1054, 1055, 1094, 1097, 1137
BsmAI GTCTC 1 cut(s) 380
BsmBI CGTCTC 1 cut(s) 380
Bsp143I GATC 7 cut(s) 32, 54, 61, 130, 218, 474, 792
Bsp19I CCATGG 1 cut(s) 1121
BspACI CCGC 5 cut(s) 93, 275, 674, 1085, 1088
BspCNI CTCAG 4 cut(s) 147, 334, 630, 958
BspDI ATCGAT 1 cut(s) 53
BspFNI CGCG 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 3 cut(s) 27, 49, 138
BspT107I GGYRCC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 1113
BsrFI RCCGGY 1 cut(s) 910
BssAI RCCGGY 1 cut(s) 910
BssECI CCNNGG 4 cut(s) 322, 419, 1048, 1121
BssMI GATC 7 cut(s) 32, 54, 61, 130, 218, 474, 792
BssT1I CCWWGG 1 cut(s) 1121
Bst2UI CCWGG 3 cut(s) 391, 420, 1050
Bst4CI ACNGT 6 cut(s) 459, 523, 561, 601, 681, 817
Bst6I CTCTTC 1 cut(s) 969
BstBAI YACGTR 2 cut(s) 495, 875
BstC8I GCNNGC 3 cut(s) 230, 1035, 1128
BstDEI CTNAG 5 cut(s) 41, 134, 342, 638, 945
BstDSI CCRYGG 2 cut(s) 322, 1121
BstEII GGTNACC 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 1095
BstF5I GGATG 3 cut(s) 95, 690, 927
BstFNI CGCG 1 cut(s) 676
BstKTI GATC 7 cut(s) 35, 57, 64, 133, 221, 477, 795
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 7 cut(s) 32, 54, 61, 130, 218, 474, 792
BstMCI CGRYCG 1 cut(s) 563
BstMWI GCNNNNNNNGC 2 cut(s) 1034, 1117
BstNI CCWGG 3 cut(s) 391, 420, 1050
BstNSI RCATGY 2 cut(s) 1006, 1130
BstPI GGTNACC 1 cut(s) 313
BstSCI CCNGG 3 cut(s) 389, 418, 1048
BstSFI CTRYAG 2 cut(s) 146, 888
BstSNI TACGTA 2 cut(s) 495, 875
BstUI CGCG 1 cut(s) 676
BstX2I RGATCY 2 cut(s) 32, 130
BstYI RGATCY 2 cut(s) 32, 130
Bsu15I ATCGAT 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 53
BtgI CCRYGG 2 cut(s) 322, 1121
BtsCI GGATG 3 cut(s) 95, 690, 927
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 3 cut(s) 230, 1035, 1128
Cfr10I RCCGGY 1 cut(s) 910
Cfr13I GGNCC 2 cut(s) 452, 1079
ClaI ATCGAT 1 cut(s) 53
Csp6I GTAC 6 cut(s) 272, 407, 496, 524, 775, 876
CspAI ACCGGT 1 cut(s) 910
CviAII CATG 7 cut(s) 86, 233, 431, 841, 1003, 1122, 1127
CviJI RGCY 7 cut(s) 80, 228, 637, 649, 664, 886, 944
CviKI_1 RGCY 7 cut(s) 80, 228, 637, 649, 664, 886, 944
CviQI GTAC 6 cut(s) 272, 407, 496, 524, 775, 876
DdeI CTNAG 5 cut(s) 41, 134, 342, 638, 945
DpnI GATC 7 cut(s) 34, 56, 63, 132, 220, 476, 794
DpnII GATC 7 cut(s) 32, 54, 61, 130, 218, 474, 792
Eam1104I CTCTTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 969
EciI GGCGGA 1 cut(s) 1074
Eco105I TACGTA 2 cut(s) 495, 875
Eco130I CCWWGG 1 cut(s) 1121
Eco47I GGWCC 2 cut(s) 452, 1079
Eco57I CTGAAG 1 cut(s) 671
Eco91I GGTNACC 1 cut(s) 313
EcoNI CCTNNNNNAGG 1 cut(s) 1095
EcoO65I GGTNACC 1 cut(s) 313
EcoRII CCWGG 3 cut(s) 389, 418, 1048
EcoT14I CCWWGG 1 cut(s) 1121
EcoT22I ATGCAT 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 1121
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 7 cut(s) 89, 236, 434, 844, 1006, 1125, 1130
FatI CATG 7 cut(s) 85, 232, 430, 840, 1002, 1121, 1126
FauI CCCGC 1 cut(s) 681
FauNDI CATATG 1 cut(s) 506
Fnu4HI GCNGC 1 cut(s) 1088
FokI GGATG 3 cut(s) 102, 677, 934
Fsp4HI GCNGC 1 cut(s) 1088
FspBI CTAG 1 cut(s) 447
GluI GCNGC 1 cut(s) 1088
HapII CCGG 2 cut(s) 269, 911
Hin1II CATG 7 cut(s) 89, 236, 434, 844, 1006, 1125, 1130
HinfI GANTC 2 cut(s) 11, 613
HpaII CCGG 2 cut(s) 269, 911
HphI GGTGA 6 cut(s) 125, 325, 527, 583, 640, 937
Hpy166II GTNNAC 3 cut(s) 455, 462, 498
Hpy188I TCNGA 4 cut(s) 32, 343, 544, 948
Hpy188III TCNNGA 4 cut(s) 74, 211, 478, 761
Hpy8I GTNNAC 3 cut(s) 455, 462, 498
HpyAV CCTTC 7 cut(s) 173, 328, 340, 646, 861, 922, 964
HpyCH4III ACNGT 6 cut(s) 459, 523, 561, 601, 681, 817
HpyCH4IV ACGT 4 cut(s) 237, 494, 874, 878
HpyCH4V TGCA 4 cut(s) 190, 472, 510, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 1034, 1117
HpyF3I CTNAG 5 cut(s) 41, 134, 342, 638, 945
HpySE526I ACGT 4 cut(s) 237, 494, 874, 878
Hsp92II CATG 7 cut(s) 89, 236, 434, 844, 1006, 1125, 1130
KpnI GGTACC 1 cut(s) 275
Kzo9I GATC 7 cut(s) 32, 54, 61, 130, 218, 474, 792
LmnI GCTCC 3 cut(s) 139, 646, 1042
LweI GCATC 2 cut(s) 80, 151
MaeI CTAG 1 cut(s) 447
MaeII ACGT 4 cut(s) 237, 494, 874, 878
MaeIII GTNAC 3 cut(s) 313, 870, 879
MalI GATC 7 cut(s) 34, 56, 63, 132, 220, 476, 794
MboI GATC 7 cut(s) 32, 54, 61, 130, 218, 474, 792
MboII GAAGA 4 cut(s) 670, 740, 876, 986
MfeI CAATTG 1 cut(s) 1013
MflI RGATCY 2 cut(s) 32, 130
MluCI AATT 7 cut(s) 334, 385, 397, 528, 737, 936, 1013
Mph1103I ATGCAT 1 cut(s) 192
MseI TTAA 2 cut(s) 819, 963
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 2 cut(s) 269, 911
MspR9I CCNGG 3 cut(s) 391, 420, 1050
MunI CAATTG 1 cut(s) 1013
MvaI CCWGG 3 cut(s) 391, 420, 1050
MvnI CGCG 1 cut(s) 676
MwoI GCNNNNNNNGC 2 cut(s) 1034, 1117
NcoI CCATGG 1 cut(s) 1121
NdeI CATATG 1 cut(s) 506
NdeII GATC 7 cut(s) 32, 54, 61, 130, 218, 474, 792
NlaIII CATG 7 cut(s) 89, 236, 434, 844, 1006, 1125, 1130
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 313
NsiI ATGCAT 1 cut(s) 192
NspI RCATGY 2 cut(s) 1006, 1130
PaeI GCATGC 1 cut(s) 1130
PciI ACATGT 1 cut(s) 1002
PfeI GAWTC 2 cut(s) 11, 613
Pfl23II CGTACG 1 cut(s) 875
PflMI CCANNNNNTGG 1 cut(s) 390
PinAI ACCGGT 1 cut(s) 910
PkrI GCNGC 1 cut(s) 1089
Ppu21I YACGTR 2 cut(s) 495, 875
PscI ACATGT 1 cut(s) 1002
Psp6I CCWGG 3 cut(s) 389, 418, 1048
PspEI GGTNACC 1 cut(s) 313
PspGI CCWGG 3 cut(s) 389, 418, 1048
PspLI CGTACG 1 cut(s) 875
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 2 cut(s) 452, 1079
PsuI RGATCY 2 cut(s) 32, 130
PvuII CAGCTG 1 cut(s) 228
RsaI GTAC 6 cut(s) 273, 408, 497, 525, 776, 877
RsaNI GTAC 6 cut(s) 272, 407, 496, 524, 775, 876
SaqAI TTAA 2 cut(s) 819, 963
SatI GCNGC 1 cut(s) 1088
Sau3AI GATC 7 cut(s) 32, 54, 61, 130, 218, 474, 792
Sau96I GGNCC 2 cut(s) 452, 1079
ScrFI CCNGG 3 cut(s) 391, 420, 1050
SfaNI GCATC 2 cut(s) 80, 151
SfcI CTRYAG 2 cut(s) 146, 888
SinI GGWCC 2 cut(s) 452, 1079
SnaBI TACGTA 2 cut(s) 495, 875
SphI GCATGC 1 cut(s) 1130
Sse9I AATT 7 cut(s) 334, 385, 397, 528, 737, 936, 1013
SsiI CCGC 5 cut(s) 93, 275, 674, 1085, 1088
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 389, 418, 1048
StyI CCWWGG 1 cut(s) 1121
TaaI ACNGT 6 cut(s) 459, 523, 561, 601, 681, 817
TaiI ACGT 4 cut(s) 240, 497, 877, 881
TaqI TCGA 3 cut(s) 53, 210, 477
TasI AATT 7 cut(s) 334, 385, 397, 528, 737, 936, 1013
TatI WGTACW 1 cut(s) 523
TauI GCSGC 1 cut(s) 1090
TfiI GAWTC 2 cut(s) 11, 613
Tru1I TTAA 2 cut(s) 819, 963
Tru9I TTAA 2 cut(s) 819, 963
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 4 cut(s) 39, 447, 626, 679
TspGWI ACGGA 3 cut(s) 311, 889, 1104
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 390
VpaK11BI GGWCC 2 cut(s) 452, 1079
XagI CCTNNNNNAGG 1 cut(s) 1095
XapI RAATTY 1 cut(s) 737
XceI RCATGY 2 cut(s) 1006, 1130
XspI CTAG 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.