Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Forward (+)

60134693 .. 60135415

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG365900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCGATCGTCTATTCCTCCATATGAGACCAAGGTTCCCATCAAAGTTCGCATTCAGGGTCAAGATTCGGTATCGGAGTTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCCGAACACAAGGTGGTCGTATCCTCGGATCCTCATTGGCATGCGCTCATGGTGATGGCTGAGGCCAAACTATACTACGGGTGGGATTTCAGTACCGCTAGTGTTGAGATTCAAGAGTGCACCTTAGTACGGGATATACTCTTTGAACACCACGAATTCGAAGATGTTATTTTTCATAAGAGCAAGTTCTATGTTGTTGCCAAGAATGGTACGACTGTATCCATTGATTCATCCTTGAAGATGACACAGGTCGCGTATCCAACAACTTGTTCTCGCAGTAAGAAATTGGTGGAGTCATTGGGGGATCTACTTTTAGTTGAGAAACGTGCGAGGCCTTTCAGGCGGAGATGTCCTCATAATCCAACTCATCATGGAATTGCAAGGTTTACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

171

Amino Acids

19.6

Weight (kDa)

9.06

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	39 - 154	5.2e-12	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AciI	CCGC	2 cut(s)	216, 463
AclWI	GGATC	3 cut(s)	143, 156, 432
AcsI	RAATTY	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	133
AfaI	GTAC	3 cut(s)	214, 249, 331
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	233, 266, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	20
Alw44I	GTGCAC	1 cut(s)	238
AlwI	GGATC	3 cut(s)	143, 156, 432
AoxI	GGCC	3 cut(s)	120, 183, 452
ApaLI	GTGCAC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	184
AsuII	TTCGAA	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	242
BaeI	ACNNNNGTAYC	4 cut(s)	321, 321, 354, 354
BamHI	GGATCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	2 cut(s)	47, 169
BciVI	GTATCC	3 cut(s)	151, 349, 387
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	219
BfuI	GTATCC	3 cut(s)	151, 349, 387
BglI	GCCNNNNNGGC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	36, 150
BoxI	GACNNNNGTC	1 cut(s)	368
BplI	GAGNNNNNCTC	2 cut(s)	457, 489
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	30, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	30, 144
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	122, 185, 454
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	122, 185, 454
Bso31I	GGTCTC	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	5, 148, 424
BspACI	CCGC	2 cut(s)	216, 463
BspANI	GGCC	3 cut(s)	122, 185, 454
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	36, 150
BspPI	GGATC	3 cut(s)	143, 156, 432
BspT104I	TTCGAA	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	30, 144
BssMI	GATC	3 cut(s)	5, 148, 424
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	337
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	180, 244
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	8, 151, 427
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	3 cut(s)	5, 148, 424
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	164
BstPAI	GACNNNNGTC	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	242
BstUI	CGCG	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	148, 424
BstYI	RGATCY	2 cut(s)	148, 424
BsuI	GTATCC	3 cut(s)	151, 349, 387
BsuRI	GGCC	3 cut(s)	122, 185, 454
BtsCI	GGATG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	213, 248, 330
CviAII	CATG	3 cut(s)	161, 169, 491
CviJI	RGCY	4 cut(s)	122, 179, 185, 454
CviKI_1	RGCY	4 cut(s)	122, 179, 185, 454
CviQI	GTAC	3 cut(s)	213, 248, 330
DdeI	CTNAG	2 cut(s)	180, 244
DpnI	GATC	3 cut(s)	7, 150, 426
DpnII	GATC	3 cut(s)	5, 148, 424
DraIII	CACNNNGTG	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	164, 172, 494
FatI	CATG	3 cut(s)	160, 168, 490
FauNDI	CATATG	1 cut(s)	22
FokI	GGATG	1 cut(s)	337
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	122, 185, 454
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	164, 172, 494
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	4 cut(s)	65, 229, 347, 413
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	240, 507
Hpy188I	TCNGA	2 cut(s)	76, 148
Hpy188III	TCNNGA	2 cut(s)	62, 233
Hpy8I	GTNNAC	2 cut(s)	240, 507
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	2 cut(s)	240, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	2 cut(s)	180, 244
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	3 cut(s)	164, 172, 494
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	5, 148, 424
LpnPI	CCDG	3 cut(s)	41, 353, 445
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	445
MalI	GATC	3 cut(s)	7, 150, 426
MboI	GATC	3 cut(s)	5, 148, 424
MboII	GAAGA	2 cut(s)	293, 370
MflI	RGATCY	2 cut(s)	148, 424
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	4 cut(s)	109, 275, 404, 495
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	404, 506
MnlI	CCTC	7 cut(s)	27, 112, 154, 162, 175, 444, 483
MslI	CAYNNNNRTG	2 cut(s)	159, 173
Mva1269I	GAATGC	1 cut(s)	51
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	3 cut(s)	5, 148, 424
NlaIII	CATG	3 cut(s)	164, 172, 494
NlaIV	GGNNCC	2 cut(s)	36, 150
NspI	RCATGY	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	164
PceI	AGGCCT	1 cut(s)	454
PctI	GAATGC	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	65, 229, 347
Ple19I	CGATCG	1 cut(s)	8
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PshAI	GACNNNNGTC	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	36, 150
PsuI	RGATCY	2 cut(s)	148, 424
PvuI	CGATCG	1 cut(s)	8
RsaI	GTAC	3 cut(s)	214, 249, 331
RsaNI	GTAC	3 cut(s)	213, 248, 330
RseI	CAYNNNNRTG	2 cut(s)	159, 173
Sau3AI	GATC	3 cut(s)	5, 148, 424
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	6 cut(s)	36, 135, 245, 372, 448, 506
SfuI	TTCGAA	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	159, 173
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	4 cut(s)	109, 275, 404, 495
SseBI	AGGCCT	1 cut(s)	454
SsiI	CCGC	2 cut(s)	216, 463
SspMI	CTAG	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	279
TasI	AATT	4 cut(s)	109, 275, 404, 495
TfiI	GAWTC	3 cut(s)	65, 229, 347
TspDTI	ATGAA	2 cut(s)	284, 339
VneI	GTGCAC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.