Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Forward (+)

61732275 .. 61734823

Gene Structure 2549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAAAAACTTCCTGATGAATTCATCGAGAGGATAGGGAACTGCATGCATACTAAACTCGATGTTACTCGATTTCGTGCTATTTGTCAACAAATGCGATCGTCTATTCCTCCATATGAGACCAAGGTTCCCATCAAAGTTCACATTCAGGGTCAAGATTCGGTATACACATTCGTCGAGAGCATTGTGTATCATCTTGTACAACCAGCTTCAAAAGCTTCTAGTTCCAGTTCAATGGAATGGGTTGTTAAAGTCCGAGACGTTGAACCCGAAAATCGTTGTCTTTTGTTACATCCACTTTCCACCTCGTTGCCTTTAGAGCCGAATTCAGAGTCGTTTCCAGATGAATTAAACTTGTTGGAATTTCAGGTATTGGAATTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCCGAACACAAGGTGGTCGTATCCTCGGATCCTCATTGGCATGCGTTCATGGTGATGGCTGAGGCAAAACTATACTACTGGGATTTCAGTACCGCTAGTGTTGAGATTCAAGAGTGCACCTTAGTACGGGATATACTCTTTGAACACCACGAATTCGAAGATGTTATTTTTCATAAGAGCAAGTTCTATGTTGTTGCCAAGAATGGTTGCTTTATGCATGGCATCAACAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

218

Amino Acids

25.25

Weight (kDa)

5.64

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	72 - 211	3.6e-10	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	2 cut(s)	443, 456
AcsI	RAATTY	4 cut(s)	20, 325, 362, 572
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	3 cut(s)	201, 511, 546
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	5 cut(s)	213, 234, 266, 530, 563
AluBI	AGCT	2 cut(s)	209, 218
AluI	AGCT	2 cut(s)	209, 218
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	2 cut(s)	113, 252
Alw44I	GTGCAC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	443, 456
AoxI	GGCC	1 cut(s)	420
ApaLI	GTGCAC	1 cut(s)	535
ApoI	RAATTY	4 cut(s)	20, 325, 362, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	484
AsuII	TTCGAA	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	539
BbvCI	CCTCAGC	1 cut(s)	480
BccI	CCATC	2 cut(s)	140, 469
BciVI	GTATCC	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	113, 252
BfaI	CTAG	2 cut(s)	222, 516
BfuI	GTATCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	129, 450
BmrI	ACTGGG	1 cut(s)	508
BmsI	GCATC	1 cut(s)	651
BmuI	ACTGGG	1 cut(s)	508
Bpu10I	CCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	123, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	2 cut(s)	228, 503
BseDI	CCNNGG	2 cut(s)	123, 444
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	228, 503
BseSI	GKGCMC	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	422
BsiEI	CGRYCG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	2 cut(s)	113, 252
BsmBI	CGTCTC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	98, 448
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	129, 450
BspPI	GGATC	2 cut(s)	443, 456
BspT104I	TTCGAA	1 cut(s)	576
BspTNI	GGTCTC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	228, 503
BssECI	CCNNGG	2 cut(s)	123, 444
BssMI	GATC	2 cut(s)	98, 448
BssNAI	GTATAC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	123
Bst1107I	GTATAC	1 cut(s)	166
BstAUI	TGTACA	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	47, 462
BstDEI	CTNAG	2 cut(s)	480, 541
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	101, 451
BstMAI	GTCTC	2 cut(s)	113, 252
BstMBI	GATC	2 cut(s)	98, 448
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 319
BstNSI	RCATGY	2 cut(s)	49, 464
BstSLI	GKGCMC	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	448
BstZ17I	GTATAC	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	47, 462
Csp6I	GTAC	3 cut(s)	200, 510, 545
CviAII	CATG	4 cut(s)	46, 461, 469, 638
CviJI	RGCY	5 cut(s)	209, 218, 322, 422, 479
CviKI_1	RGCY	5 cut(s)	209, 218, 322, 422, 479
CviQI	GTAC	3 cut(s)	200, 510, 545
DdeI	CTNAG	2 cut(s)	480, 541
DpnI	GATC	2 cut(s)	100, 450
DpnII	GATC	2 cut(s)	98, 448
DraIII	CACNNNGTG	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	113
EcoRI	GAATTC	3 cut(s)	20, 325, 572
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	2 cut(s)	51, 639
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	4 cut(s)	49, 464, 472, 641
FatI	CATG	4 cut(s)	45, 460, 468, 637
FauNDI	CATATG	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	1 cut(s)	279
FspBI	CTAG	2 cut(s)	222, 516
HaeIII	GGCC	1 cut(s)	422
Hin1II	CATG	4 cut(s)	49, 464, 472, 641
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	3 cut(s)	158, 332, 526
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	4 cut(s)	89, 142, 166, 537
Hpy188I	TCNGA	3 cut(s)	257, 331, 448
Hpy188III	TCNNGA	6 cut(s)	14, 28, 155, 178, 341, 530
Hpy8I	GTNNAC	4 cut(s)	89, 142, 166, 537
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	45, 49, 537, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 319
HpyF3I	CTNAG	2 cut(s)	480, 541
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	49, 464, 472, 641
Kzo9I	GATC	2 cut(s)	98, 448
LpnPI	CCDG	7 cut(s)	27, 134, 219, 241, 353, 354, 484
LweI	GCATC	1 cut(s)	651
MaeI	CTAG	2 cut(s)	222, 516
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	64, 288
MalI	GATC	2 cut(s)	100, 450
MboI	GATC	2 cut(s)	98, 448
MboII	GAAGA	1 cut(s)	590
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	7 cut(s)	20, 325, 347, 362, 377, 409, 572
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	7 cut(s)	24, 120, 316, 412, 454, 462, 475
Mph1103I	ATGCAT	2 cut(s)	51, 639
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	249, 350
MslI	CAYNNNNRTG	2 cut(s)	459, 473
MwoI	GCNNNNNNNGC	2 cut(s)	215, 319
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	2 cut(s)	98, 448
NlaIII	CATG	4 cut(s)	49, 464, 472, 641
NlaIV	GGNNCC	2 cut(s)	129, 450
NsiI	ATGCAT	2 cut(s)	51, 639
NspI	RCATGY	2 cut(s)	49, 464
NspV	TTCGAA	1 cut(s)	576
PaeI	GCATGC	2 cut(s)	49, 464
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	158, 526
Ple19I	CGATCG	1 cut(s)	101
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	129, 450
PsuI	RGATCY	1 cut(s)	448
PvuI	CGATCG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	201, 511, 546
RsaNI	GTAC	3 cut(s)	200, 510, 545
RseI	CAYNNNNRTG	2 cut(s)	459, 473
SaqAI	TTAA	2 cut(s)	249, 350
Sau3AI	GATC	2 cut(s)	98, 448
SchI	GAGTC	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	8 cut(s)	129, 211, 220, 264, 308, 372, 435, 542
SfaNI	GCATC	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	576
SmiMI	CAYNNNNRTG	2 cut(s)	459, 473
SphI	GCATGC	2 cut(s)	49, 464
Sse9I	AATT	7 cut(s)	20, 325, 347, 362, 377, 409, 572
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	2 cut(s)	222, 516
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	5 cut(s)	27, 60, 70, 177, 576
TasI	AATT	7 cut(s)	20, 325, 347, 362, 377, 409, 572
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	2 cut(s)	158, 526
Tru1I	TTAA	2 cut(s)	249, 350
Tru9I	TTAA	2 cut(s)	249, 350
TspDTI	ATGAA	5 cut(s)	13, 33, 360, 457, 581
VneI	GTGCAC	1 cut(s)	535
XapI	RAATTY	4 cut(s)	20, 325, 362, 572
XceI	RCATGY	2 cut(s)	49, 464
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	2 cut(s)	222, 516
Zsp2I	ATGCAT	2 cut(s)	51, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.