Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Forward (+)

61653130 .. 61659992

Gene Structure 6863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG342000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAATGGGTTGTTAAAGTCCGAGAAGTTGAACCCGAAAATCGTTGTCTTTTGTTACATCCACTTTCCACCTCGTTGCCTTTAGAGCCGAATTCAGAGTCGTTTCCAGATGAATTAAACGTGTTGGAATTTCAGGTATTGGAATTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCCGAACACAAGGTGGTCGTATCCACGGATCCTCATTGGCATGCGCTCATGGTGATGGCTGAGGCAAAACTATACTACTGGGATTTCAGTACCGCTAGTGTTGAGATTCAAGAATGCACCTTAGTACATGATATACTCTTTGAATACCACAAATTCGAAGATATTATTTTTCATAAGAGAAAGTTCTATGTTGTTGCCAAGGATGGTACAACTGTATCCATTGATTCTTCCTTGAAGATGACACAGGAAGCTGTTAAGCGTTTGCAAGCAGAGAAAAAGGAAGCCAAAATTGAGGATGAGCCACAAAAGGAGAAGTTTGAAGTTCACCAAGGAGAAAATGACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

177

Amino Acids

20.7

Weight (kDa)

5.06

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	2 - 148	4.4e-10	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	2 cut(s)	209, 222
AcsI	RAATTY	3 cut(s)	91, 128, 338
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	3 cut(s)	277, 312, 394
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	5 cut(s)	32, 296, 329, 421, 506
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
AlwI	GGATC	2 cut(s)	209, 222
AoxI	GGCC	1 cut(s)	186
ApoI	RAATTY	3 cut(s)	91, 128, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	250, 503
AsuII	TTCGAA	1 cut(s)	342
BaeI	ACNNNNGTAYC	4 cut(s)	384, 384, 417, 417
BamHI	GGATCC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	246
BccI	CCATC	2 cut(s)	235, 383
BciVI	GTATCC	2 cut(s)	217, 412
BfaI	CTAG	1 cut(s)	282
BfuI	GTATCC	2 cut(s)	217, 412
BmiI	GGNNCC	1 cut(s)	216
BmrI	ACTGGG	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	210, 384, 514
Bse1I	ACTGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	210, 384, 514
BseGI	GGATG	3 cut(s)	58, 394, 487
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	188
Bsp119I	TTCGAA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	2 cut(s)	209, 222
BspT104I	TTCGAA	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	3 cut(s)	210, 384, 514
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	2 cut(s)	384, 514
Bst4CI	ACNGT	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	228, 453
BstDEI	CTNAG	2 cut(s)	246, 307
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	58, 394, 487
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	2 cut(s)	217, 412
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	58, 394, 487
Cac8I	GCNNGC	2 cut(s)	228, 453
CfoI	GCGC	1 cut(s)	232
Csp6I	GTAC	3 cut(s)	276, 311, 393
CviAII	CATG	3 cut(s)	227, 235, 314
CviJI	RGCY	6 cut(s)	88, 188, 245, 437, 470, 487
CviKI_1	RGCY	6 cut(s)	88, 188, 245, 437, 470, 487
CviQI	GTAC	3 cut(s)	276, 311, 393
DdeI	CTNAG	2 cut(s)	246, 307
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	384, 514
EcoRI	GAATTC	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	384, 514
ErhI	CCWWGG	2 cut(s)	384, 514
FaeI	CATG	3 cut(s)	230, 238, 317
FaiI	YATR	8 cut(s)	159, 228, 236, 259, 315, 320, 360, 375
FatI	CATG	3 cut(s)	226, 234, 313
FokI	GGATG	3 cut(s)	45, 401, 494
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	230, 238, 317
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	3 cut(s)	98, 292, 410
HphI	GGTGA	2 cut(s)	250, 503
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	23, 97
Hpy188III	TCNNGA	2 cut(s)	107, 296
Hpy8I	GTNNAC	1 cut(s)	511
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	303, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	246, 307
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	230, 238, 317
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	4 cut(s)	119, 120, 250, 416
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	3 cut(s)	356, 405, 433
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	7 cut(s)	91, 113, 128, 143, 175, 338, 474
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	82, 178, 228, 241, 472
MseI	TTAA	3 cut(s)	15, 116, 441
MslI	CAYNNNNRTG	2 cut(s)	225, 239
Mva1269I	GAATGC	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	3 cut(s)	230, 238, 317
NlaIV	GGNNCC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	230
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	292, 410
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	3 cut(s)	277, 312, 394
RsaNI	GTAC	3 cut(s)	276, 311, 393
RseI	CAYNNNNRTG	2 cut(s)	225, 239
SaqAI	TTAA	3 cut(s)	15, 116, 441
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	107
SetI	ASST	6 cut(s)	74, 123, 138, 201, 308, 439
SfuI	TTCGAA	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	225, 239
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	7 cut(s)	91, 113, 128, 143, 175, 338, 474
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	1 cut(s)	282
StyI	CCWWGG	2 cut(s)	384, 514
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	342
TasI	AATT	7 cut(s)	91, 113, 128, 143, 175, 338, 474
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	292, 410
Tru1I	TTAA	3 cut(s)	15, 116, 441
Tru9I	TTAA	3 cut(s)	15, 116, 441
TspDTI	ATGAA	2 cut(s)	126, 347
TspGWI	ACGGA	1 cut(s)	227
XapI	RAATTY	3 cut(s)	91, 128, 338
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.