four-way junction helicase activity
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000027029 RLG00000027032 RLG00000027034 |
| rosa_multiflora | Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00286470 Rroxscaffold_4G00286480 |
| rosa_rugosa | Rorug01G0357500 |
| rosa_samantha | Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300 |
| rosa_wichuraiana | Rw1G032240 Rw1G032260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1263 |
| AatII | GACGTC | 1 cut(s) | 1004 |
| AccI | GTMKAC | 1 cut(s) | 72 |
| AccII | CGCG | 2 cut(s) | 425, 1348 |
| AciI | CCGC | 5 cut(s) | 514, 764, 959, 1188, 1346 |
| AclI | AACGTT | 1 cut(s) | 921 |
| AclWI | GGATC | 6 cut(s) | 350, 483, 698, 720, 822, 1044 |
| AcsI | RAATTY | 3 cut(s) | 232, 269, 1226 |
| AcuI | CTGAAG | 1 cut(s) | 1343 |
| AcyI | GRCGYC | 1 cut(s) | 1001 |
| AdeI | CACNNNGTG | 1 cut(s) | 340 |
| AfaI | GTAC | 4 cut(s) | 108, 743, 1172, 1200 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 713 |
| AgsI | TTSAA | 8 cut(s) | 120, 141, 173, 409, 565, 590, 1031, 1240 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 424, 456 |
| AluBI | AGCT | 6 cut(s) | 116, 125, 600, 642, 1309, 1321 |
| AluI | AGCT | 6 cut(s) | 116, 125, 600, 642, 1309, 1321 |
| Alw26I | GTCTC | 3 cut(s) | 20, 159, 1067 |
| AlwI | GGATC | 6 cut(s) | 350, 483, 698, 720, 822, 1044 |
| Ama87I | CYCGRG | 2 cut(s) | 572, 657 |
| AoxI | GGCC | 2 cut(s) | 327, 503 |
| ApeKI | GCWGC | 1 cut(s) | 1185 |
| ApoI | RAATTY | 3 cut(s) | 232, 269, 1226 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 224, 256 |
| AspLEI | GCGC | 1 cut(s) | 373 |
| AspS9I | GGNCC | 1 cut(s) | 1127 |
| AsuHPI | GGTGA | 7 cut(s) | 641, 796, 944, 1009, 1202, 1255, 1312 |
| AvaI | CYCGRG | 2 cut(s) | 572, 657 |
| AvaII | GGWCC | 1 cut(s) | 1127 |
| BbsI | GAAGAC | 1 cut(s) | 416 |
| BbvI | GCAGC | 1 cut(s) | 1197 |
| BccI | CCATC | 2 cut(s) | 47, 906 |
| BciVI | GTATCC | 3 cut(s) | 358, 400, 438 |
| BcoDI | GTCTC | 3 cut(s) | 20, 159, 1067 |
| BfaI | CTAG | 3 cut(s) | 129, 1095, 1122 |
| BfmI | CTRYAG | 2 cut(s) | 830, 939 |
| BfuI | GTATCC | 3 cut(s) | 358, 400, 438 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 511 |
| BisI | GCNGC | 2 cut(s) | 959, 1186 |
| BlsI | GCNGC | 2 cut(s) | 960, 1187 |
| Bme18I | GGWCC | 1 cut(s) | 1127 |
| BmeT110I | CYCGRG | 2 cut(s) | 572, 657 |
| BmgT120I | GGNCC | 1 cut(s) | 1127 |
| BmiI | GGNNCC | 1 cut(s) | 36 |
| BmsI | GCATC | 4 cut(s) | 536, 662, 751, 835 |
| BoxI | GACNNNNGTC | 1 cut(s) | 419 |
| BpiI | GAAGAC | 1 cut(s) | 416 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 508, 540 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1310 |
| BpuEI | CTTGAG | 1 cut(s) | 622 |
| Bsa29I | ATCGAT | 1 cut(s) | 724 |
| BsaAI | YACGTR | 2 cut(s) | 745, 1170 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1284 |
| BsaHI | GRCGYC | 1 cut(s) | 1001 |
| BsaI | GGTCTC | 1 cut(s) | 20 |
| BsaJI | CCNNGG | 1 cut(s) | 30 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1319, 1349 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 713 |
| Bse1I | ACTGG | 2 cut(s) | 135, 953 |
| Bse3DI | GCAATG | 1 cut(s) | 587 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1284 |
| BseCI | ATCGAT | 1 cut(s) | 724 |
| BseDI | CCNNGG | 1 cut(s) | 30 |
| BseGI | GGATG | 6 cut(s) | 199, 401, 551, 766, 1285, 1362 |
| BseJI | GATNNNNATC | 1 cut(s) | 1284 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 713 |
| BseMI | GCAATG | 1 cut(s) | 587 |
| BseMII | CTCAG | 1 cut(s) | 832 |
| BseNI | ACTGG | 2 cut(s) | 135, 953 |
| BseRI | GAGGAG | 1 cut(s) | 1171 |
| BseXI | GCAGC | 1 cut(s) | 1197 |
| Bsh1236I | CGCG | 2 cut(s) | 425, 1348 |
| Bsh1285I | CGRYCG | 1 cut(s) | 8 |
| BshFI | GGCC | 2 cut(s) | 329, 505 |
| BshVI | ATCGAT | 1 cut(s) | 724 |
| BsiEI | CGRYCG | 1 cut(s) | 8 |
| BsiHKCI | CYCGRG | 2 cut(s) | 572, 657 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 713 |
| BsmAI | GTCTC | 3 cut(s) | 20, 159, 1067 |
| BsmI | GAATGC | 1 cut(s) | 51 |
| BsnI | GGCC | 2 cut(s) | 329, 505 |
| Bso31I | GGTCTC | 1 cut(s) | 20 |
| BsoBI | CYCGRG | 2 cut(s) | 572, 657 |
| Bsp1407I | TGTACA | 1 cut(s) | 106 |
| Bsp143I | GATC | 9 cut(s) | 5, 355, 475, 610, 703, 725, 732, 814, 1036 |
| BspACI | CCGC | 5 cut(s) | 514, 764, 959, 1188, 1346 |
| BspANI | GGCC | 2 cut(s) | 329, 505 |
| BspCNI | CTCAG | 1 cut(s) | 831 |
| BspDI | ATCGAT | 1 cut(s) | 724 |
| BspFNI | CGCG | 2 cut(s) | 425, 1348 |
| BspLI | GGNNCC | 1 cut(s) | 36 |
| BspPI | GGATC | 6 cut(s) | 350, 483, 698, 720, 822, 1044 |
| BspQI | GCTCTTC | 1 cut(s) | 590 |
| BspTNI | GGTCTC | 1 cut(s) | 20 |
| BsrDI | GCAATG | 1 cut(s) | 587 |
| BsrGI | TGTACA | 1 cut(s) | 106 |
| BsrI | ACTGG | 2 cut(s) | 135, 953 |
| BssECI | CCNNGG | 1 cut(s) | 30 |
| BssMI | GATC | 9 cut(s) | 5, 355, 475, 610, 703, 725, 732, 814, 1036 |
| BssNAI | GTATAC | 1 cut(s) | 73 |
| BssNI | GRCGYC | 1 cut(s) | 1001 |
| BssT1I | CCWWGG | 1 cut(s) | 30 |
| Bst1107I | GTATAC | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 4 cut(s) | 388, 1088, 1198, 1353 |
| Bst6I | CTCTTC | 2 cut(s) | 590, 1026 |
| BstACI | GRCGYC | 1 cut(s) | 1001 |
| BstAUI | TGTACA | 1 cut(s) | 106 |
| BstBAI | YACGTR | 2 cut(s) | 745, 1170 |
| BstC8I | GCNNGC | 1 cut(s) | 369 |
| BstDEI | CTNAG | 3 cut(s) | 712, 818, 1310 |
| BstF5I | GGATG | 6 cut(s) | 199, 401, 551, 766, 1285, 1362 |
| BstFNI | CGCG | 2 cut(s) | 425, 1348 |
| BstHHI | GCGC | 1 cut(s) | 373 |
| BstKTI | GATC | 9 cut(s) | 8, 358, 478, 613, 706, 728, 735, 817, 1039 |
| BstMAI | GTCTC | 3 cut(s) | 20, 159, 1067 |
| BstMBI | GATC | 9 cut(s) | 5, 355, 475, 610, 703, 725, 732, 814, 1036 |
| BstMCI | CGRYCG | 1 cut(s) | 8 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 122, 226, 511, 964 |
| BstNSI | RCATGY | 1 cut(s) | 371 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 419 |
| BstSFI | CTRYAG | 2 cut(s) | 830, 939 |
| BstSNI | TACGTA | 1 cut(s) | 1170 |
| BstUI | CGCG | 2 cut(s) | 425, 1348 |
| BstV1I | GCAGC | 1 cut(s) | 1197 |
| BstV2I | GAAGAC | 1 cut(s) | 416 |
| BstX2I | RGATCY | 4 cut(s) | 475, 703, 814, 1036 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 142, 676 |
| BstYI | RGATCY | 4 cut(s) | 475, 703, 814, 1036 |
| BstZ17I | GTATAC | 1 cut(s) | 73 |
| Bsu15I | ATCGAT | 1 cut(s) | 724 |
| BsuI | GTATCC | 3 cut(s) | 358, 400, 438 |
| BsuRI | GGCC | 2 cut(s) | 329, 505 |
| BsuTUI | ATCGAT | 1 cut(s) | 724 |
| BtsCI | GGATG | 6 cut(s) | 199, 401, 551, 766, 1285, 1362 |
| BtsIMutI | CAGTG | 3 cut(s) | 384, 960, 1084 |
| Cac8I | GCNNGC | 1 cut(s) | 369 |
| CfoI | GCGC | 1 cut(s) | 373 |
| Cfr13I | GGNCC | 1 cut(s) | 1127 |
| ClaI | ATCGAT | 1 cut(s) | 724 |
| Csp6I | GTAC | 4 cut(s) | 107, 742, 1171, 1199 |
| CviAII | CATG | 4 cut(s) | 368, 542, 757, 1106 |
| CviQI | GTAC | 4 cut(s) | 107, 742, 1171, 1199 |
| DdeI | CTNAG | 3 cut(s) | 712, 818, 1310 |
| DpnI | GATC | 9 cut(s) | 7, 357, 477, 612, 705, 727, 734, 816, 1038 |
| DpnII | GATC | 9 cut(s) | 5, 355, 475, 610, 703, 725, 732, 814, 1036 |
| DraI | TTTAAA | 1 cut(s) | 1294 |
| DraIII | CACNNNGTG | 1 cut(s) | 340 |
| Eam1104I | CTCTTC | 2 cut(s) | 590, 1026 |
| EarI | CTCTTC | 2 cut(s) | 590, 1026 |
| EciI | GGCGGA | 1 cut(s) | 529 |
| Eco105I | TACGTA | 1 cut(s) | 1170 |
| Eco130I | CCWWGG | 1 cut(s) | 30 |
| Eco147I | AGGCCT | 1 cut(s) | 505 |
| Eco31I | GGTCTC | 1 cut(s) | 20 |
| Eco32I | GATATC | 1 cut(s) | 1119 |
| Eco47I | GGWCC | 1 cut(s) | 1127 |
| Eco57I | CTGAAG | 1 cut(s) | 1343 |
| Eco88I | CYCGRG | 2 cut(s) | 572, 657 |
| EcoRI | GAATTC | 1 cut(s) | 232 |
| EcoRV | GATATC | 1 cut(s) | 1119 |
| EcoT14I | CCWWGG | 1 cut(s) | 30 |
| EcoT22I | ATGCAT | 1 cut(s) | 876 |
| ErhI | CCWWGG | 1 cut(s) | 30 |
| FaeI | CATG | 4 cut(s) | 371, 545, 760, 1109 |
| FatI | CATG | 4 cut(s) | 367, 541, 756, 1105 |
| FauI | CCCGC | 1 cut(s) | 1353 |
| FauNDI | CATATG | 1 cut(s) | 22 |
| FblI | GTMKAC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 2 cut(s) | 959, 1186 |
| FokI | GGATG | 6 cut(s) | 186, 388, 558, 773, 1272, 1349 |
| Fsp4HI | GCNGC | 2 cut(s) | 959, 1186 |
| FspBI | CTAG | 3 cut(s) | 129, 1095, 1122 |
| GlaI | GCGC | 1 cut(s) | 372 |
| GluI | GCNGC | 2 cut(s) | 959, 1186 |
| HaeIII | GGCC | 2 cut(s) | 329, 505 |
| HhaI | GCGC | 1 cut(s) | 373 |
| Hin1I | GRCGYC | 1 cut(s) | 1001 |
| Hin1II | CATG | 4 cut(s) | 371, 545, 760, 1109 |
| Hin6I | GCGC | 1 cut(s) | 371 |
| HinP1I | GCGC | 1 cut(s) | 371 |
| HindIII | AAGCTT | 1 cut(s) | 123 |
| HinfI | GANTC | 6 cut(s) | 65, 239, 398, 464, 682, 1134 |
| HphI | GGTGA | 7 cut(s) | 641, 796, 944, 1009, 1202, 1255, 1312 |
| Hpy166II | GTNNAC | 4 cut(s) | 73, 556, 1130, 1173 |
| Hpy188I | TCNGA | 6 cut(s) | 164, 238, 283, 355, 703, 911 |
| Hpy188III | TCNNGA | 8 cut(s) | 62, 85, 248, 659, 895, 926, 1040, 1218 |
| Hpy8I | GTNNAC | 4 cut(s) | 73, 556, 1130, 1173 |
| Hpy99I | CGWCG | 1 cut(s) | 1353 |
| HpyAV | CCTTC | 6 cut(s) | 857, 923, 1015, 1234, 1309, 1318 |
| HpyCH4III | ACNGT | 4 cut(s) | 388, 1088, 1198, 1353 |
| HpyCH4IV | ACGT | 6 cut(s) | 261, 496, 744, 921, 1001, 1169 |
| HpyCH4V | TGCA | 3 cut(s) | 549, 874, 1147 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 122, 226, 511, 964 |
| HpyF3I | CTNAG | 3 cut(s) | 712, 818, 1310 |
| HpySE526I | ACGT | 6 cut(s) | 261, 496, 744, 921, 1001, 1169 |
| Hsp92I | GRCGYC | 1 cut(s) | 1001 |
| Hsp92II | CATG | 4 cut(s) | 371, 545, 760, 1109 |
| HspAI | GCGC | 1 cut(s) | 371 |
| Kzo9I | GATC | 9 cut(s) | 5, 355, 475, 610, 703, 725, 732, 814, 1036 |
| LguI | GCTCTTC | 1 cut(s) | 590 |
| LmnI | GCTCC | 2 cut(s) | 823, 1318 |
| Lsp1109I | GCAGC | 1 cut(s) | 1197 |
| LweI | GCATC | 4 cut(s) | 536, 662, 751, 835 |
| MaeI | CTAG | 3 cut(s) | 129, 1095, 1122 |
| MaeII | ACGT | 6 cut(s) | 261, 496, 744, 921, 1001, 1169 |
| MaeIII | GTNAC | 5 cut(s) | 195, 629, 997, 1190, 1335 |
| MalI | GATC | 9 cut(s) | 7, 357, 477, 612, 705, 727, 734, 816, 1038 |
| MboI | GATC | 9 cut(s) | 5, 355, 475, 610, 703, 725, 732, 814, 1036 |
| MboII | GAAGA | 4 cut(s) | 421, 607, 1043, 1342 |
| MflI | RGATCY | 4 cut(s) | 475, 703, 814, 1036 |
| MluCI | AATT | 9 cut(s) | 232, 254, 269, 316, 455, 900, 1021, 1203, 1226 |
| MlyI | GAGTC | 2 cut(s) | 248, 473 |
| MmeI | TCCRAC | 2 cut(s) | 455, 557 |
| Mph1103I | ATGCAT | 1 cut(s) | 876 |
| MseI | TTAA | 4 cut(s) | 156, 257, 1230, 1293 |
| MslI | CAYNNNNRTG | 1 cut(s) | 366 |
| MspA1I | CMGCKG | 1 cut(s) | 1188 |
| Mva1269I | GAATGC | 1 cut(s) | 51 |
| MvnI | CGCG | 2 cut(s) | 425, 1348 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 122, 226, 511, 964 |
| NdeI | CATATG | 1 cut(s) | 22 |
| NdeII | GATC | 9 cut(s) | 5, 355, 475, 610, 703, 725, 732, 814, 1036 |
| NlaIII | CATG | 4 cut(s) | 371, 545, 760, 1109 |
| NlaIV | GGNNCC | 1 cut(s) | 36 |
| NmuCI | GTSAC | 3 cut(s) | 629, 997, 1190 |
| NsiI | ATGCAT | 1 cut(s) | 876 |
| NspI | RCATGY | 1 cut(s) | 371 |
| PaeI | GCATGC | 1 cut(s) | 371 |
| PaeR7I | CTCGAG | 1 cut(s) | 657 |
| PceI | AGGCCT | 1 cut(s) | 505 |
| PciSI | GCTCTTC | 1 cut(s) | 590 |
| PctI | GAATGC | 1 cut(s) | 51 |
| PfeI | GAWTC | 4 cut(s) | 65, 398, 682, 1134 |
| PkrI | GCNGC | 2 cut(s) | 960, 1187 |
| Ple19I | CGATCG | 1 cut(s) | 8 |
| PleI | GAGTC | 2 cut(s) | 247, 472 |
| PpsI | GAGTC | 2 cut(s) | 247, 472 |
| Ppu21I | YACGTR | 2 cut(s) | 745, 1170 |
| PshAI | GACNNNNGTC | 1 cut(s) | 419 |
| PsiI | TTATAA | 1 cut(s) | 1263 |
| Psp1406I | AACGTT | 1 cut(s) | 921 |
| PspN4I | GGNNCC | 1 cut(s) | 36 |
| PspPI | GGNCC | 1 cut(s) | 1127 |
| PsuI | RGATCY | 4 cut(s) | 475, 703, 814, 1036 |
| PvuI | CGATCG | 1 cut(s) | 8 |
| RsaI | GTAC | 4 cut(s) | 108, 743, 1172, 1200 |
| RsaNI | GTAC | 4 cut(s) | 107, 742, 1171, 1199 |
| RseI | CAYNNNNRTG | 1 cut(s) | 366 |
| SapI | GCTCTTC | 1 cut(s) | 590 |
| SaqAI | TTAA | 4 cut(s) | 156, 257, 1230, 1293 |
| SatI | GCNGC | 2 cut(s) | 959, 1186 |
| Sau3AI | GATC | 9 cut(s) | 5, 355, 475, 610, 703, 725, 732, 814, 1036 |
| Sau96I | GGNCC | 1 cut(s) | 1127 |
| SchI | GAGTC | 2 cut(s) | 248, 473 |
| SfaNI | GCATC | 4 cut(s) | 536, 662, 751, 835 |
| SfcI | CTRYAG | 2 cut(s) | 830, 939 |
| Sfr274I | CTCGAG | 1 cut(s) | 657 |
| SinI | GGWCC | 1 cut(s) | 1127 |
| SlaI | CTCGAG | 1 cut(s) | 657 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 366 |
| SmlI | CTYRAG | 2 cut(s) | 601, 657 |
| SmoI | CTYRAG | 2 cut(s) | 601, 657 |
| SnaBI | TACGTA | 1 cut(s) | 1170 |
| SphI | GCATGC | 1 cut(s) | 371 |
| Sse9I | AATT | 9 cut(s) | 232, 254, 269, 316, 455, 900, 1021, 1203, 1226 |
| SseBI | AGGCCT | 1 cut(s) | 505 |
| SsiI | CCGC | 5 cut(s) | 514, 764, 959, 1188, 1346 |
| SspMI | CTAG | 3 cut(s) | 129, 1095, 1122 |
| StuI | AGGCCT | 1 cut(s) | 505 |
| StyI | CCWWGG | 1 cut(s) | 30 |
| TaaI | ACNGT | 4 cut(s) | 388, 1088, 1198, 1353 |
| TaiI | ACGT | 6 cut(s) | 264, 499, 747, 924, 1004, 1172 |
| TaqI | TCGA | 6 cut(s) | 613, 658, 724, 894, 927, 1041 |
| TasI | AATT | 9 cut(s) | 232, 254, 269, 316, 455, 900, 1021, 1203, 1226 |
| TatI | WGTACW | 2 cut(s) | 106, 1198 |
| TauI | GCSGC | 1 cut(s) | 961 |
| TfiI | GAWTC | 4 cut(s) | 65, 398, 682, 1134 |
| Tru1I | TTAA | 4 cut(s) | 156, 257, 1230, 1293 |
| Tru9I | TTAA | 4 cut(s) | 156, 257, 1230, 1293 |
| TscAI | CASTG | 3 cut(s) | 391, 960, 1091 |
| TseFI | GTSAC | 3 cut(s) | 629, 997, 1190 |
| TseI | GCWGC | 1 cut(s) | 1185 |
| Tsp45I | GTSAC | 3 cut(s) | 629, 997, 1190 |
| TspDTI | ATGAA | 6 cut(s) | 267, 390, 608, 710, 1122, 1351 |
| TspGWI | ACGGA | 3 cut(s) | 894, 998, 1061 |
| TspRI | CASTG | 3 cut(s) | 391, 960, 1091 |
| VpaK11BI | GGWCC | 1 cut(s) | 1127 |
| XapI | RAATTY | 3 cut(s) | 232, 269, 1226 |
| XceI | RCATGY | 1 cut(s) | 371 |
| XhoI | CTCGAG | 1 cut(s) | 657 |
| XmiI | GTMKAC | 1 cut(s) | 72 |
| XspI | CTAG | 3 cut(s) | 129, 1095, 1122 |
| ZraI | GACGTC | 1 cut(s) | 1002 |
| Zsp2I | ATGCAT | 1 cut(s) | 876 |