Rh1AG366000

Ubiquitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010633
Physical Location & Seq
Forward (+)
60135442 .. 60135903
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG366000.1

Sequence Viewer

Length: 462 bp
ATGAAGAGCTTGAATAAAGATCGAAGTTTGTTTGTGGGTGACTACACCAGCTTCTCTGCTTCTACTAGAGATATTCCCAGATGCTTGGGGAATCACATTTTTTTCTCATCAGATCCATACTTGGGGTTTCATCGATCCAAGATCAGGTTGTACGTGAGGCTTCTCATGGATGCGGAGGTGGTTGTGGCGGAGGTGATAGTCAGCGAACACGATGAGGTAGGGGATCTCAGGGAGCATCTACAGGTGGCAGACTTCCTTCTCCCTCCACATTATCTCTTTATGCATAAAATGTCTGTGATGTTCGAGATAATTCCGTTCAGATGGCATAACGTTCTCGAAGGTGATACTATAGATGTAGTTCCAGTGCCGCAAGTGCTGGAACAAGAAAAAGATGTAAAGGTGTTGGTGACGTCCTTCCGTGGAAGTAAAAATTACAAGAGGATTTCGACAGGGAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

153

Amino Acids

17.74

Weight (kDa)

7.06

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 1 - 46 8.3e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 413
AciI CCGC 3 cut(s) 173, 188, 368
AclI AACGTT 1 cut(s) 330
AclWI GGATC 3 cut(s) 107, 129, 231
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 122, 144
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 9, 51
AluI AGCT 2 cut(s) 9, 51
AlwI GGATC 3 cut(s) 107, 129, 231
AsuHPI GGTGA 4 cut(s) 50, 205, 353, 418
BccI CCATC 1 cut(s) 315
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 2 cut(s) 239, 348
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
BmsI GCATC 3 cut(s) 71, 160, 244
Bsa29I ATCGAT 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 418
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 144
Bse1I ACTGG 1 cut(s) 362
BseCI ATCGAT 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 122, 144
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 362
BshVI ATCGAT 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 122, 144
Bsp143I GATC 5 cut(s) 19, 112, 134, 141, 223
BspACI CCGC 3 cut(s) 173, 188, 368
BspCNI CTCAG 1 cut(s) 240
BspDI ATCGAT 1 cut(s) 133
BspPI GGATC 3 cut(s) 107, 129, 231
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 5 cut(s) 19, 112, 134, 141, 223
BssNI GRCGYC 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 227
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 5 cut(s) 22, 115, 137, 144, 226
BstMBI GATC 5 cut(s) 19, 112, 134, 141, 223
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstSFI CTRYAG 2 cut(s) 239, 348
BstX2I RGATCY 2 cut(s) 112, 223
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 2 cut(s) 112, 223
Bsu15I ATCGAT 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 133
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 166
CviJI RGCY 3 cut(s) 9, 51, 160
CviKI_1 RGCY 3 cut(s) 9, 51, 160
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 227
DpnI GATC 5 cut(s) 21, 114, 136, 143, 225
DpnII GATC 5 cut(s) 19, 112, 134, 141, 223
EciI GGCGGA 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 285
FaeI CATG 1 cut(s) 169
FaiI YATR 6 cut(s) 118, 167, 281, 285, 327, 350
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 1 cut(s) 169
HinfI GANTC 1 cut(s) 91
HphI GGTGA 4 cut(s) 50, 205, 353, 418
Hpy188I TCNGA 2 cut(s) 112, 320
Hpy188III TCNNGA 2 cut(s) 304, 335
HpyAV CCTTC 3 cut(s) 266, 332, 424
HpyCH4IV ACGT 3 cut(s) 153, 330, 410
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 3 cut(s) 153, 330, 410
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 5 cut(s) 19, 112, 134, 141, 223
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 8 cut(s) 61, 91, 130, 214, 227, 362, 375, 435
LweI GCATC 3 cut(s) 71, 160, 244
MaeI CTAG 1 cut(s) 66
MaeII ACGT 3 cut(s) 153, 330, 410
MaeIII GTNAC 2 cut(s) 38, 406
MalI GATC 5 cut(s) 21, 114, 136, 143, 225
MboI GATC 5 cut(s) 19, 112, 134, 141, 223
MboII GAAGA 1 cut(s) 16
MflI RGATCY 2 cut(s) 112, 223
MluCI AATT 2 cut(s) 309, 430
MnlI CCTC 6 cut(s) 150, 169, 184, 208, 273, 432
Mph1103I ATGCAT 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 5 cut(s) 19, 112, 134, 141, 223
NlaIII CATG 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 38, 406
NsiI ATGCAT 1 cut(s) 285
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 369
Ppu21I YACGTR 1 cut(s) 154
Psp1406I AACGTT 1 cut(s) 330
PsuI RGATCY 2 cut(s) 112, 223
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 5 cut(s) 19, 112, 134, 141, 223
SfaNI GCATC 3 cut(s) 71, 160, 244
SfcI CTRYAG 2 cut(s) 239, 348
Sse9I AATT 2 cut(s) 309, 430
SsiI CCGC 3 cut(s) 173, 188, 368
SspMI CTAG 1 cut(s) 66
TaiI ACGT 3 cut(s) 156, 333, 413
TaqI TCGA 5 cut(s) 22, 133, 303, 336, 446
TasI AATT 2 cut(s) 309, 430
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 38, 406
Tsp45I GTSAC 2 cut(s) 38, 406
TspDTI ATGAA 2 cut(s) 17, 119
TspGWI ACGGA 2 cut(s) 303, 407
TspRI CASTG 1 cut(s) 369
XspI CTAG 1 cut(s) 66
ZraI GACGTC 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.