Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Reverse (-)

7794586 .. 7795999

Gene Structure 1414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGATGGAAAAACTTCCTAATGAATTAATCGAGAGGATAGGGAACTGCATGCATACTAAACTCGATGTTACTCGATTTCGTGCTATTTGTCAACAAATGCGATCGTCTATTCCTCCATATGAGATCAAGGTTCCCATCAAAGTTCGCATTCAGGGTCAAGATTCGGTATACACATTCGTCAAGAGCATTGTGTATCATCTTGTACAACCAGCTTCAAAAGCTTCTAGTTCCAGTTCAATGGAATGTGTTGTTAAAGTCCGAGACGTTGAACCCGAAAATGGTTGTCTTTTGTTACATCCACTTTCCACTTCGTTGCCTTTAAAGCCCAATTCAGAGTCGTTTCCAGATGAATTAAACGTGTTGGAATTTCAGGTATTGGAATTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCCGAACACAAGGGGGTCGTATCCTCGGATCCTCATTGGCAGGCGCTCATGGTGATGGCTGAGGCAAAACTATACTACGGGGATTTCAGTACCGCTAGTGTTGAGATTCAAGAGTGCACCTTAGTACGGGATATACTCTTTGAACACCAAGAATTCGAAGATGTTATTTTTCATAAGAGCAAGTTCTATGTTGTTGCCAGGAATGGTACTACTGTATCCATTGATTCTTCCTTGAAGATGACACAGGTCGCGTATCCAACAACTTGTTCTTGCAGTAAGAAATTGGTGGAGTCATTGGGGGATCTACTTTTAGTTGTGAAATGTGCGAGGCCTTTGAGGTGGAGATGTCCTCATAATCCAACTCATCATGGATGCAAGGTTTACAAGTTGAACGAACCTGAAAAGCAATGGGTTGAAATGAAAAGCTTGAATAAAGATCGAAATCCATACTTAGGGTTTCATCGATCCAAGATCAAGTTGTTCGTGAGGCTTCTCATGGATGCGGAGGTGGTAGTGGTGGAGGTGATAGTCAGCGAACACGATGAGCTGGTAGGGGATCTCAGGGAGCATCTACAGGTGGCACACTTCCTTCTCCCTCCACATTATCTCTTTATGCATAAAATGTCTGTGATGTTCGAGAAAAGATCATTCAGCTGGCATGACGTTTTCGAAGGCCATAATATGGATGTAGTTCCGGTGCCGCAAGTGCTGGAACAAGAAAAAGATGTAAAGGTGTTGGTGACCTTCCGTGGAAGTAAAAATTACTCTGAGAAAGATTTTGACACGGGAAAAATAAGTCGTCTCTTTCCCTATTCCTGGTTCAATTCCTGTGTACCGCGTATGCCTGGGGTGTTCCATGATCTAATGACATCTAGTGGTCCACAGTTTACTCACTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

442

Amino Acids

50.74

Weight (kDa)

7.04

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	78 - 288	3.6e-19	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1120
AccB7I	CCANNNNNTGG	1 cut(s)	1105
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	2 cut(s)	674, 1261
AciI	CCGC	4 cut(s)	516, 926, 1124, 1259
AclWI	GGATC	5 cut(s)	446, 459, 732, 882, 987
AcsI	RAATTY	2 cut(s)	365, 575
AfaI	GTAC	5 cut(s)	204, 514, 549, 631, 1257
AfiI	CCNNNNNNNGG	5 cut(s)	278, 549, 875, 1105, 1239
AflIII	ACRYGT	1 cut(s)	357
AjnI	CCWGG	3 cut(s)	620, 1238, 1267
AjuI	GAANNNNNNNTTGG	2 cut(s)	673, 705
AluBI	AGCT	5 cut(s)	212, 221, 849, 970, 1077
AluI	AGCT	5 cut(s)	212, 221, 849, 970, 1077
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	2 cut(s)	255, 1229
Alw44I	GTGCAC	1 cut(s)	538
AlwI	GGATC	5 cut(s)	446, 459, 732, 882, 987
AoxI	GGCC	3 cut(s)	423, 752, 1096
ApaLI	GTGCAC	1 cut(s)	538
ApoI	RAATTY	2 cut(s)	365, 575
AseI	ATTAAT	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	1301
AsuHPI	GGTGA	3 cut(s)	487, 958, 1174
AsuII	TTCGAA	2 cut(s)	579, 1092
AvaII	GGWCC	1 cut(s)	1301
BaeGI	GKGCMC	1 cut(s)	542
BaeI	ACNNNNGTAYC	4 cut(s)	621, 621, 654, 654
BamHI	GGATCC	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	1120
Bbv12I	GWGCWC	1 cut(s)	542
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	143, 472
BciT130I	CCWGG	3 cut(s)	622, 1240, 1269
BciVI	GTATCC	3 cut(s)	454, 649, 687
BcoDI	GTCTC	2 cut(s)	255, 1229
BfaI	CTAG	3 cut(s)	225, 519, 1296
BfmI	CTRYAG	1 cut(s)	995
BfoI	RGCGCY	1 cut(s)	470
BfuI	GTATCC	3 cut(s)	454, 649, 687
BisI	GCNGC	1 cut(s)	1124
BlsI	GCNGC	1 cut(s)	1125
Bme1390I	CCNGG	3 cut(s)	622, 1240, 1269
Bme18I	GGWCC	1 cut(s)	1301
BmgT120I	GGNCC	1 cut(s)	1301
BmiI	GGNNCC	3 cut(s)	132, 453, 1122
BmrFI	CCNGG	3 cut(s)	622, 1240, 1269
BmsI	GCATC	3 cut(s)	785, 913, 1000
BoxI	GACNNNNGTC	1 cut(s)	668
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	2 cut(s)	579, 1092
Bsa29I	ATCGAT	1 cut(s)	886
BsaBI	GATNNNNATC	1 cut(s)	864
BsaJI	CCNNGG	3 cut(s)	447, 1171, 1268
BsaWI	WCCGGW	1 cut(s)	1117
Bsc4I	CCNNNNNNNGG	5 cut(s)	278, 549, 875, 1105, 1239
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	836
Bse8I	GATNNNNATC	1 cut(s)	864
BseBI	CCWGG	3 cut(s)	622, 1240, 1269
BseCI	ATCGAT	1 cut(s)	886
BseDI	CCNNGG	3 cut(s)	447, 1171, 1268
BseGI	GGATG	4 cut(s)	295, 800, 928, 1114
BseJI	GATNNNNATC	1 cut(s)	864
BseLI	CCNNNNNNNGG	5 cut(s)	278, 549, 875, 1105, 1239
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	3 cut(s)	474, 997, 1182
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	542
Bsh1236I	CGCG	2 cut(s)	674, 1261
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	425, 754, 1098
BshNI	GGYRCC	1 cut(s)	1120
BshVI	ATCGAT	1 cut(s)	886
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	1118
BslI	CCNNNNNNNGG	5 cut(s)	278, 549, 875, 1105, 1239
BsmAI	GTCTC	2 cut(s)	255, 1229
BsmBI	CGTCTC	2 cut(s)	255, 1229
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	425, 754, 1098
Bsp119I	TTCGAA	2 cut(s)	579, 1092
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp1407I	TGTACA	1 cut(s)	202
BspACI	CCGC	4 cut(s)	516, 926, 1124, 1259
BspANI	GGCC	3 cut(s)	425, 754, 1098
BspCNI	CTCAG	3 cut(s)	475, 996, 1183
BspDI	ATCGAT	1 cut(s)	886
BspFNI	CGCG	2 cut(s)	674, 1261
BspLI	GGNNCC	3 cut(s)	132, 453, 1122
BspPI	GGATC	5 cut(s)	446, 459, 732, 882, 987
BspT104I	TTCGAA	2 cut(s)	579, 1092
BspT107I	GGYRCC	1 cut(s)	1120
BsrDI	GCAATG	1 cut(s)	836
BsrGI	TGTACA	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	3 cut(s)	447, 1171, 1268
BssNAI	GTATAC	1 cut(s)	169
Bst1107I	GTATAC	1 cut(s)	169
Bst2UI	CCWGG	3 cut(s)	622, 1240, 1269
Bst4CI	ACNGT	2 cut(s)	637, 1308
BstAUI	TGTACA	1 cut(s)	202
BstBI	TTCGAA	2 cut(s)	579, 1092
BstC8I	GCNNGC	3 cut(s)	50, 465, 1079
BstDEI	CTNAG	5 cut(s)	483, 544, 874, 983, 1191
BstDSI	CCRYGG	1 cut(s)	1171
BstEII	GGTNACC	1 cut(s)	1162
BstF5I	GGATG	4 cut(s)	295, 800, 928, 1114
BstFNI	CGCG	2 cut(s)	674, 1261
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstMAI	GTCTC	2 cut(s)	255, 1229
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 322, 1129
BstNI	CCWGG	3 cut(s)	622, 1240, 1269
BstNSI	RCATGY	1 cut(s)	52
BstPAI	GACNNNNGTC	1 cut(s)	668
BstPI	GGTNACC	1 cut(s)	1162
BstSCI	CCNGG	3 cut(s)	620, 1238, 1267
BstSFI	CTRYAG	1 cut(s)	995
BstSLI	GKGCMC	1 cut(s)	542
BstUI	CGCG	2 cut(s)	674, 1261
BstX2I	RGATCY	3 cut(s)	451, 724, 979
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	3 cut(s)	451, 724, 979
BstZ17I	GTATAC	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	886
BsuI	GTATCC	3 cut(s)	454, 649, 687
BsuRI	GGCC	3 cut(s)	425, 754, 1098
BsuTUI	ATCGAT	1 cut(s)	886
BtgI	CCRYGG	1 cut(s)	1171
BtsCI	GGATG	4 cut(s)	295, 800, 928, 1114
Cac8I	GCNNGC	3 cut(s)	50, 465, 1079
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	1301
ClaI	ATCGAT	1 cut(s)	886
Csp6I	GTAC	5 cut(s)	203, 513, 548, 630, 1256
CviAII	CATG	6 cut(s)	49, 472, 791, 919, 1082, 1280
CviQI	GTAC	5 cut(s)	203, 513, 548, 630, 1256
DdeI	CTNAG	5 cut(s)	483, 544, 874, 983, 1191
DraI	TTTAAA	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	1301
Eco91I	GGTNACC	1 cut(s)	1162
EcoO65I	GGTNACC	1 cut(s)	1162
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	620, 1238, 1267
EcoT22I	ATGCAT	2 cut(s)	54, 1041
Esp3I	CGTCTC	2 cut(s)	255, 1229
FaeI	CATG	6 cut(s)	52, 475, 794, 922, 1085, 1283
FatI	CATG	6 cut(s)	48, 471, 790, 918, 1081, 1279
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	1124
FokI	GGATG	4 cut(s)	282, 807, 935, 1121
Fsp4HI	GCNGC	1 cut(s)	1124
FspBI	CTAG	3 cut(s)	225, 519, 1296
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	1 cut(s)	1124
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	3 cut(s)	425, 754, 1098
HapII	CCGG	1 cut(s)	1118
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	6 cut(s)	52, 475, 794, 922, 1085, 1283
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HindIII	AAGCTT	2 cut(s)	219, 847
HinfI	GANTC	5 cut(s)	161, 335, 529, 647, 713
HpaII	CCGG	1 cut(s)	1118
HphI	GGTGA	3 cut(s)	487, 958, 1174
Hpy166II	GTNNAC	7 cut(s)	92, 169, 540, 805, 1256, 1304, 1311
Hpy188I	TCNGA	4 cut(s)	260, 334, 451, 1192
Hpy188III	TCNNGA	7 cut(s)	31, 158, 181, 344, 533, 907, 1060
Hpy8I	GTNNAC	7 cut(s)	92, 169, 540, 805, 1256, 1304, 1311
HpyAV	CCTTC	3 cut(s)	1022, 1088, 1177
HpyCH4III	ACNGT	2 cut(s)	637, 1308
HpyCH4IV	ACGT	3 cut(s)	264, 357, 1086
HpyCH4V	TGCA	6 cut(s)	48, 52, 540, 696, 798, 1039
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 322, 1129
HpyF3I	CTNAG	5 cut(s)	483, 544, 874, 983, 1191
HpySE526I	ACGT	3 cut(s)	264, 357, 1086
Hsp92II	CATG	6 cut(s)	52, 475, 794, 922, 1085, 1283
HspAI	GCGC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	988
LweI	GCATC	3 cut(s)	785, 913, 1000
MaeI	CTAG	3 cut(s)	225, 519, 1296
MaeII	ACGT	3 cut(s)	264, 357, 1086
MaeIII	GTNAC	3 cut(s)	67, 291, 1162
MboII	GAAGA	3 cut(s)	593, 642, 670
MflI	RGATCY	3 cut(s)	451, 724, 979
MhlI	GDGCHC	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	344, 722
MmeI	TCCRAC	3 cut(s)	342, 704, 806
Mph1103I	ATGCAT	2 cut(s)	54, 1041
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	4 cut(s)	26, 252, 320, 353
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	1077
MspI	CCGG	1 cut(s)	1118
MspR9I	CCNGG	3 cut(s)	622, 1240, 1269
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	3 cut(s)	622, 1240, 1269
MvnI	CGCG	2 cut(s)	674, 1261
MwoI	GCNNNNNNNGC	3 cut(s)	218, 322, 1129
NdeI	CATATG	1 cut(s)	118
NlaIII	CATG	6 cut(s)	52, 475, 794, 922, 1085, 1283
NlaIV	GGNNCC	3 cut(s)	132, 453, 1122
NmuCI	GTSAC	1 cut(s)	1162
NsiI	ATGCAT	2 cut(s)	54, 1041
NspI	RCATGY	1 cut(s)	52
NspV	TTCGAA	2 cut(s)	579, 1092
PaeI	GCATGC	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	161, 529, 647
PflMI	CCANNNNNTGG	1 cut(s)	1105
PkrI	GCNGC	1 cut(s)	1125
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	2 cut(s)	343, 721
PpsI	GAGTC	2 cut(s)	343, 721
PshAI	GACNNNNGTC	1 cut(s)	668
PshBI	ATTAAT	1 cut(s)	26
Psp6I	CCWGG	3 cut(s)	620, 1238, 1267
PspEI	GGTNACC	1 cut(s)	1162
PspGI	CCWGG	3 cut(s)	620, 1238, 1267
PspN4I	GGNNCC	3 cut(s)	132, 453, 1122
PspPI	GGNCC	1 cut(s)	1301
PsuI	RGATCY	3 cut(s)	451, 724, 979
PvuI	CGATCG	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	1077
RsaI	GTAC	5 cut(s)	204, 514, 549, 631, 1257
RsaNI	GTAC	5 cut(s)	203, 513, 548, 630, 1256
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	4 cut(s)	26, 252, 320, 353
SatI	GCNGC	1 cut(s)	1124
Sau96I	GGNCC	1 cut(s)	1301
SchI	GAGTC	2 cut(s)	344, 722
ScrFI	CCNGG	3 cut(s)	622, 1240, 1269
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	3 cut(s)	785, 913, 1000
SfcI	CTRYAG	1 cut(s)	995
SfuI	TTCGAA	2 cut(s)	579, 1092
SinI	GGWCC	1 cut(s)	1301
SmiMI	CAYNNNNRTG	1 cut(s)	476
SphI	GCATGC	1 cut(s)	52
SseBI	AGGCCT	1 cut(s)	754
SsiI	CCGC	4 cut(s)	516, 926, 1124, 1259
SspMI	CTAG	3 cut(s)	225, 519, 1296
StuI	AGGCCT	1 cut(s)	754
StyD4I	CCNGG	3 cut(s)	620, 1238, 1267
TaaI	ACNGT	2 cut(s)	637, 1308
TaiI	ACGT	3 cut(s)	267, 360, 1089
TaqI	TCGA	8 cut(s)	30, 63, 73, 579, 862, 886, 1059, 1092
TatI	WGTACW	1 cut(s)	202
TauI	GCSGC	1 cut(s)	1126
TfiI	GAWTC	3 cut(s)	161, 529, 647
Tru1I	TTAA	4 cut(s)	26, 252, 320, 353
Tru9I	TTAA	4 cut(s)	26, 252, 320, 353
TseFI	GTSAC	1 cut(s)	1162
Tsp45I	GTSAC	1 cut(s)	1162
TspDTI	ATGAA	5 cut(s)	36, 363, 584, 857, 872
TspGWI	ACGGA	1 cut(s)	1160
Van91I	CCANNNNNTGG	1 cut(s)	1105
VneI	GTGCAC	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	1301
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	2 cut(s)	365, 575
XceI	RCATGY	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	3 cut(s)	225, 519, 1296
Zsp2I	ATGCAT	2 cut(s)	54, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.