Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010633

Physical Location & Seq

Genomic Coordinates Reverse (-)

7808780 .. 7812420

Gene Structure 3641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGACATCCAGTGGTCCACGGTTCACTCACTTGCAGAACGAGAGGAGGTGTTATACGTACACTAACATACGCAGCGGTGACAGAGTACAAATTGTTTGTTTTTCAGGAATAAAATTTAATAAGTTGAAGGTGAATGTGATTGTGAATTATAAGGGAACTGTGGTGGATATACGTCCTTTTAGAAAGGTGAAAGAGCTAAGGAAGGAGCTGAAGGAGAAGAAGTTACATCTCCCGCGACGGTATTACTTCATCCTGCTCGTCCAAAATGCTCAATATCTTATGGACGAAGAAGTGGAATTTATGAATTACTTGATCCATCTTGACGATGTGATGTACGATGAAGATGGAACAATCAAATTTGTGCCAATTGTTAATATAAAGGCAGCAGCTCACGCTCCTCGTACAATTAGCAATTTGGAATCAACTCATTTTGGTAGTAACTCCACATGTCCAGCTTATGTGTCTGCCCCTAATCCAGCCTCATGGAACTGCATGACATGTTTGAAAGCTCAGTGCGGCTTCTGTGCTAATTGTGTCTCGGCTGCTGCCCCGGGAGCGTGGGTGGCTTCGAATGATGGCTTGATCGAAAAAGGCATGTGCCGGAGAACATCGTTGGAGCGGAGGTTCGAGCTGCCCGGGCTCATCTCTAGCGATGTCGCCGGCGCATTTCTAGCGATGTCGCTGGCGCATCCTCAGTCGTGGCTCAATCCTTCTGCGACTGGATTCTCCACCATCAAACGGAACCATAACCTCACCGCCAAAGCCGCCGCGCAGCGGCTTGCGCAGGTCATGACATCGCAGACAACGGTTGATGACGACGATGAGGATGACGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

280

Amino Acids

31.28

Weight (kDa)

8.52

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010633)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000027029 RLG00000027032 RLG00000027034
rosa_multiflora	Rmu_sc0002558.1_g000001 Rmu_sc0002558.1_g000006 Rmu_sc0002558.1_g000007
rosa_roxburghii	Rroxscaffold_4G00286470 Rroxscaffold_4G00286480
rosa_rugosa	Rorug01G0357500
rosa_samantha	Rh1AG365900 Rh1AG366000 Rh1AG366100 Rh1AG366500 Rh1AG366600 Rh1CG342000 Rh1CG342100 Rh1CG342800 Rh1CG343000 Rh1CG344300
rosa_wichuraiana	Rw1G032240 Rw1G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
Acc16I	TGCGCA	1 cut(s)	783
Acc36I	ACCTGC	1 cut(s)	775
AccBSI	CCGCTC	1 cut(s)	619
AccII	CGCG	2 cut(s)	235, 770
AciI	CCGC	8 cut(s)	75, 233, 516, 619, 756, 765, 768, 775
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	3 cut(s)	113, 296, 356
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	4 cut(s)	59, 87, 335, 403
AfiI	CCNNNNNNNGG	2 cut(s)	738, 774
AflIII	ACRYGT	2 cut(s)	446, 497
AgsI	TTSAA	2 cut(s)	127, 505
AloI	GAACNNNNNNTCC	2 cut(s)	608, 640
AluBI	AGCT	6 cut(s)	196, 208, 389, 455, 509, 631
AluI	AGCT	6 cut(s)	196, 208, 389, 455, 509, 631
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	2 cut(s)	550, 635
ApeKI	GCWGC	7 cut(s)	72, 383, 386, 542, 545, 631, 772
ApoI	RAATTY	3 cut(s)	113, 296, 356
AspLEI	GCGC	4 cut(s)	665, 688, 772, 784
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	4 cut(s)	551, 552, 636, 637
AsuHPI	GGTGA	4 cut(s)	89, 142, 199, 745
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	2 cut(s)	550, 635
AvaII	GGWCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	642
BbvI	GCAGC	7 cut(s)	84, 395, 398, 529, 532, 618, 784
BccI	CCATC	4 cut(s)	324, 338, 569, 740
BcnI	CCSGG	4 cut(s)	551, 552, 636, 637
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	2 cut(s)	648, 671
BfuAI	ACCTGC	1 cut(s)	775
Bme1390I	CCNGG	4 cut(s)	551, 552, 636, 637
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	2 cut(s)	550, 635
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	743
BmrFI	CCNGG	4 cut(s)	551, 552, 636, 637
BmsI	GCATC	1 cut(s)	697
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	569
BpuMI	CCSGG	4 cut(s)	551, 552, 636, 637
BsaAI	YACGTR	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	831
BsaJI	CCNNGG	4 cut(s)	17, 549, 550, 635
BsaXI	ACNNNNNCTCC	6 cut(s)	206, 236, 546, 576, 608, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 774
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	2 cut(s)	9, 724
Bse8I	GATNNNNATC	1 cut(s)	831
BseDI	CCNNGG	4 cut(s)	17, 549, 550, 635
BseGI	GGATG	4 cut(s)	5, 249, 688, 832
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	2 cut(s)	738, 774
BseMII	CTCAG	2 cut(s)	524, 707
BseNI	ACTGG	2 cut(s)	9, 724
BseRI	GAGGAG	2 cut(s)	58, 387
BseXI	GCAGC	7 cut(s)	84, 395, 398, 529, 532, 618, 784
Bsh1236I	CGCG	2 cut(s)	235, 770
BsiHKCI	CYCGRG	2 cut(s)	550, 635
BsiSI	CCGG	4 cut(s)	551, 601, 636, 660
BslI	CCNNNNNNNGG	2 cut(s)	738, 774
BsmAI	GTCTC	1 cut(s)	541
BsoBI	CYCGRG	2 cut(s)	550, 635
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	312, 582, 832
BspACI	CCGC	8 cut(s)	75, 233, 516, 619, 756, 765, 768, 775
BspCNI	CTCAG	2 cut(s)	523, 706
BspFNI	CGCG	2 cut(s)	235, 770
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	743
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	569
BsrBI	CCGCTC	1 cut(s)	619
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	9, 724
BssAI	RCCGGY	1 cut(s)	659
BssECI	CCNNGG	4 cut(s)	17, 549, 550, 635
BssMI	GATC	3 cut(s)	312, 582, 832
Bst4CI	ACNGT	4 cut(s)	21, 160, 240, 808
BstBAI	YACGTR	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	661, 684, 780
BstDEI	CTNAG	3 cut(s)	197, 510, 693
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	4 cut(s)	5, 249, 688, 832
BstFNI	CGCG	2 cut(s)	235, 770
BstHHI	GCGC	4 cut(s)	665, 688, 772, 784
BstKTI	GATC	3 cut(s)	315, 585, 835
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	3 cut(s)	312, 582, 832
BstMWI	GCNNNNNNNGC	7 cut(s)	392, 554, 563, 637, 671, 764, 781
BstNSI	RCATGY	3 cut(s)	450, 501, 598
BstSCI	CCNGG	4 cut(s)	549, 550, 634, 635
BstSNI	TACGTA	1 cut(s)	57
BstUI	CGCG	2 cut(s)	235, 770
BstV1I	GCAGC	7 cut(s)	84, 395, 398, 529, 532, 618, 784
BstXI	CCANNNNNNTGG	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	17
BtgZI	GCGATG	3 cut(s)	666, 689, 780
BtsCI	GGATG	4 cut(s)	5, 249, 688, 832
BtsIMutI	CAGTG	2 cut(s)	16, 518
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	3 cut(s)	661, 684, 780
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	4 cut(s)	665, 688, 772, 784
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	1 cut(s)	14
Cfr9I	CCCGGG	2 cut(s)	550, 635
Csp6I	GTAC	4 cut(s)	58, 86, 334, 402
CviAII	CATG	6 cut(s)	447, 483, 493, 498, 595, 790
CviQI	GTAC	4 cut(s)	58, 86, 334, 402
DdeI	CTNAG	3 cut(s)	197, 510, 693
DpnI	GATC	3 cut(s)	314, 584, 834
DpnII	GATC	3 cut(s)	312, 582, 832
Eco105I	TACGTA	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	2 cut(s)	550, 635
EcoT38I	GRGCYC	1 cut(s)	642
FaeI	CATG	6 cut(s)	450, 486, 496, 501, 598, 793
FatI	CATG	6 cut(s)	446, 482, 492, 497, 594, 789
FauI	CCCGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	236, 675
FriOI	GRGCYC	1 cut(s)	642
FspBI	CTAG	2 cut(s)	648, 671
FspI	TGCGCA	1 cut(s)	783
GlaI	GCGC	4 cut(s)	664, 687, 771, 783
HapII	CCGG	4 cut(s)	551, 601, 636, 660
HhaI	GCGC	4 cut(s)	665, 688, 772, 784
Hin1II	CATG	6 cut(s)	450, 486, 496, 501, 598, 793
Hin6I	GCGC	4 cut(s)	663, 686, 770, 782
HinP1I	GCGC	4 cut(s)	663, 686, 770, 782
HinfI	GANTC	2 cut(s)	419, 723
HpaII	CCGG	4 cut(s)	551, 601, 636, 660
HphI	GGTGA	4 cut(s)	89, 142, 199, 745
Hpy166II	GTNNAC	3 cut(s)	17, 24, 60
Hpy188I	TCNGA	1 cut(s)	839
Hpy188III	TCNNGA	3 cut(s)	105, 320, 790
Hpy8I	GTNNAC	3 cut(s)	17, 24, 60
Hpy99I	CGWCG	2 cut(s)	240, 821
HpyAV	CCTTC	4 cut(s)	121, 196, 205, 720
HpyCH4III	ACNGT	4 cut(s)	21, 160, 240, 808
HpyCH4IV	ACGT	2 cut(s)	56, 172
HpyCH4V	TGCA	2 cut(s)	34, 492
HpyF10VI	GCNNNNNNNGC	7 cut(s)	392, 554, 563, 637, 671, 764, 781
HpyF3I	CTNAG	3 cut(s)	197, 510, 693
HpySE526I	ACGT	2 cut(s)	56, 172
Hsp92II	CATG	6 cut(s)	450, 486, 496, 501, 598, 793
HspAI	GCGC	4 cut(s)	663, 686, 770, 782
KroI	GCCGGC	1 cut(s)	659
KroNI	GCCGGC	1 cut(s)	661
Kzo9I	GATC	3 cut(s)	312, 582, 832
LmnI	GCTCC	4 cut(s)	205, 400, 554, 616
Lsp1109I	GCAGC	7 cut(s)	84, 395, 398, 529, 532, 618, 784
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	2 cut(s)	648, 671
MaeII	ACGT	2 cut(s)	56, 172
MaeIII	GTNAC	3 cut(s)	77, 222, 437
MalI	GATC	3 cut(s)	314, 584, 834
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	3 cut(s)	312, 582, 832
MboII	GAAGA	3 cut(s)	229, 299, 353
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	642
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	8 cut(s)	36, 39, 408, 490, 615, 702, 761, 817
MreI	CGCCGGCG	1 cut(s)	659
MroNI	GCCGGC	1 cut(s)	659
MseI	TTAA	2 cut(s)	117, 372
MspA1I	CMGCKG	2 cut(s)	75, 775
MspI	CCGG	4 cut(s)	551, 601, 636, 660
MspR9I	CCNGG	4 cut(s)	551, 552, 636, 637
MunI	CAATTG	1 cut(s)	366
MvnI	CGCG	2 cut(s)	235, 770
MwoI	GCNNNNNNNGC	7 cut(s)	392, 554, 563, 637, 671, 764, 781
NaeI	GCCGGC	1 cut(s)	661
NciI	CCSGG	4 cut(s)	551, 552, 636, 637
NdeII	GATC	3 cut(s)	312, 582, 832
NgoMIV	GCCGGC	1 cut(s)	659
NlaIII	CATG	6 cut(s)	450, 486, 496, 501, 598, 793
NlaIV	GGNNCC	1 cut(s)	743
NmeAIII	GCCGAG	1 cut(s)	518
NmuCI	GTSAC	1 cut(s)	77
NsbI	TGCGCA	1 cut(s)	783
NspI	RCATGY	3 cut(s)	450, 501, 598
NspV	TTCGAA	1 cut(s)	569
PagI	TCATGA	1 cut(s)	789
PciI	ACATGT	2 cut(s)	446, 497
PdiI	GCCGGC	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	419, 723
Ppu21I	YACGTR	1 cut(s)	57
PscI	ACATGT	2 cut(s)	446, 497
PsiI	TTATAA	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	743
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	4 cut(s)	59, 87, 335, 403
RsaNI	GTAC	4 cut(s)	58, 86, 334, 402
SaqAI	TTAA	2 cut(s)	117, 372
Sau3AI	GATC	3 cut(s)	312, 582, 832
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	551, 552, 636, 637
SduI	GDGCHC	1 cut(s)	642
SfaNI	GCATC	1 cut(s)	697
SfuI	TTCGAA	1 cut(s)	569
SgrAI	CRCCGGYG	1 cut(s)	659
SinI	GGWCC	1 cut(s)	14
SmaI	CCCGGG	2 cut(s)	552, 637
SnaBI	TACGTA	1 cut(s)	57
SrfI	GCCCGGGC	1 cut(s)	637
SsiI	CCGC	8 cut(s)	75, 233, 516, 619, 756, 765, 768, 775
SspMI	CTAG	2 cut(s)	648, 671
StyD4I	CCNGG	4 cut(s)	549, 550, 634, 635
TaaI	ACNGT	4 cut(s)	21, 160, 240, 808
TaiI	ACGT	2 cut(s)	59, 175
TaqI	TCGA	3 cut(s)	569, 585, 627
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	4 cut(s)	519, 767, 770, 778
TfiI	GAWTC	2 cut(s)	419, 723
Tru1I	TTAA	2 cut(s)	117, 372
Tru9I	TTAA	2 cut(s)	117, 372
TscAI	CASTG	2 cut(s)	16, 518
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	7 cut(s)	72, 383, 386, 542, 545, 631, 772
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	238, 317, 354
TspGWI	ACGGA	1 cut(s)	754
TspMI	CCCGGG	2 cut(s)	550, 635
TspRI	CASTG	2 cut(s)	16, 518
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	3 cut(s)	113, 296, 356
XceI	RCATGY	3 cut(s)	450, 501, 598
XmaI	CCCGGG	2 cut(s)	550, 635
XspI	CTAG	2 cut(s)	648, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.