Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017761

Physical Location & Seq

Genomic Coordinates Reverse (-)

34242834 .. 34246134

Gene Structure 3301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGACGAAGTCGTATTCGCTCTACATCTCCTCCAAATGATAATTATTGAACATGTGGATGCTGCTAAAAAGAAGAGAGGTCGACGCTCACTACAAGACTCAGAGAGATTGGCAAATTTATCTTTTGCTGCATACTTCAAGAAACTTATAGAAGAAAAGGCCTGGAATGGTGATAGTACTATCGATCCTGATATCACAGCATTAGCTGCTGGCCCTGTTAAAAAAGCTGGAAGATACAAGAGATATGTTATAAACGGTTTCCGCTTACAAGAGCATTTGGCACTTATCTTTGAACAAAAAGAAGCAGAGAAAGCTAACCAAAACATAGAAATAACCCCTAAGGTTGTAGAAGATATATACGCTGACGTGTTTGGTGTTGAGAGGAGGAACCGAGTTAGAGGAATGGGAACGGGATATAAATGGGCTGATGTTCCTTTTATCCATACAGAAAACAAAGGGATTTCAAAAGAGGTGGAGGAACTAAGGGCTGCTGTGGAGGAACAAAAAAGTGTGTCTGCAAGAGCATTGATGGAGGTTGAAAGATTGAGAATTGAATCTGCAAGGGAAAGGAATGAAGTTGCTGAAAGAGAAAGACAACGTGAGGCAGAGTTGGATAAGATAAGAGCTGATCAACTACAGATGATGGAGAACATGAAAAAAATGCAAGACTTGATGGAAATGCCAAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0008283 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0031990 GO:0032991 GO:0033036 GO:0033554 GO:0034605 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098687 GO:1901360 GO:1902579

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

230

Amino Acids

26.67

Weight (kDa)

6.95

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017761)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g03380
rosa_chinensis	RchiOBHm_Chr6g0271181 RchiOBHm_Chr6g0312091
rosa_multiflora	Rmu_co8257479.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192870
rosa_rugosa	Rorug01G0357500 Rorug05G0506300
rosa_samantha	Rh5AG241900 Rh5BG511100 Rh6AG509300 Rh7CG510200 Rh7DG477800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	82
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	1 cut(s)	178
AflIII	ACRYGT	2 cut(s)	52, 366
AgsI	TTSAA	6 cut(s)	50, 139, 293, 465, 539, 554
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	206, 227, 314, 626
AluI	AGCT	4 cut(s)	206, 227, 314, 626
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	2 cut(s)	159, 211
ApeKI	GCWGC	4 cut(s)	62, 128, 206, 488
ApoI	RAATTY	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	49, 115, 193, 475
BccI	CCATC	3 cut(s)	523, 637, 667
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	628
BfmI	CTRYAG	1 cut(s)	635
BisI	GCNGC	4 cut(s)	63, 129, 207, 489
BlsI	GCNGC	4 cut(s)	64, 130, 208, 490
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	683
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse21I	CCTNAGG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	20, 397
BseXI	GCAGC	4 cut(s)	49, 115, 193, 475
BshFI	GGCC	2 cut(s)	161, 213
BshVI	ATCGAT	1 cut(s)	183
BsnI	GGCC	2 cut(s)	161, 213
Bsp143I	GATC	2 cut(s)	184, 628
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	161, 213
BspCNI	CTCAG	1 cut(s)	113
BspDI	ATCGAT	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	2 cut(s)	184, 628
BssT1I	CCWWGG	1 cut(s)	683
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	3 cut(s)	100, 339, 482
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	187, 631
BstMBI	GATC	2 cut(s)	184, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 311
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	635
BstV1I	GCAGC	4 cut(s)	49, 115, 193, 475
Bsu15I	ATCGAT	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	161, 213
BsuTUI	ATCGAT	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviAII	CATG	3 cut(s)	53, 652, 690
CviJI	RGCY	8 cut(s)	161, 206, 213, 227, 314, 425, 488, 626
CviKI_1	RGCY	8 cut(s)	161, 206, 213, 227, 314, 425, 488, 626
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	3 cut(s)	100, 339, 482
DpnI	GATC	2 cut(s)	186, 630
DpnII	GATC	2 cut(s)	184, 628
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	683
Eco147I	AGGCCT	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	161
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	3 cut(s)	56, 655, 693
FatI	CATG	3 cut(s)	52, 651, 689
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	63, 129, 207, 489
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	63, 129, 207, 489
GluI	GCNGC	4 cut(s)	63, 129, 207, 489
HaeIII	GGCC	2 cut(s)	161, 213
HgaI	GACGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	56, 655, 693
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	98, 554
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	139, 188
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	366, 598
HpyCH4V	TGCA	4 cut(s)	131, 518, 560, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 311
HpyF3I	CTNAG	3 cut(s)	100, 339, 482
HpySE526I	ACGT	2 cut(s)	366, 598
Hsp92II	CATG	3 cut(s)	56, 655, 693
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	184, 628
LpnPI	CCDG	6 cut(s)	148, 175, 195, 201, 213, 228
Lsp1109I	GCAGC	4 cut(s)	49, 115, 193, 475
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	2 cut(s)	366, 598
MalI	GATC	2 cut(s)	186, 630
MboI	GATC	2 cut(s)	184, 628
MboII	GAAGA	4 cut(s)	85, 164, 243, 362
MluCI	AATT	3 cut(s)	42, 115, 549
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	591
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	206, 311
NdeII	GATC	2 cut(s)	184, 628
NlaIII	CATG	3 cut(s)	56, 655, 693
NlaIV	GGNNCC	1 cut(s)	389
NspI	RCATGY	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	161
PciI	ACATGT	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	554
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	64, 130, 208, 490
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	212
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	4 cut(s)	63, 129, 207, 489
Sau3AI	GATC	2 cut(s)	184, 628
Sau96I	GGNCC	1 cut(s)	212
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	42, 115, 549
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	262
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	369, 601
TaqI	TCGA	2 cut(s)	82, 183
TasI	AATT	3 cut(s)	42, 115, 549
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	4 cut(s)	62, 128, 206, 488
TspDTI	ATGAA	2 cut(s)	588, 668
Tth111I	GACNNNGTC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.