Rh7DG477800

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017761
Physical Location & Seq
Reverse (-)
68203991 .. 68208265
4275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG477800.1

Sequence Viewer

Length: 1227 bp
ATGAACACCCGTCCTCCTCTTCCTCATCCTCCACCTCCAACCAGCACCCGACTGATCTCTGCTTCAGCCTCCGCCTCGACTCTCTTCCTTCTCCGCCTCCGCCTCCACTATCCTCCTCCTTTTCTTCCTTTGGCACACCTGTTCTCTCATCTCTCTTCTCAAATTCACCAGATCCGCCAAAGATGCAGTCCACGCCGGAGCTCCGCCTCCGCTATCCTCCTCCTTTTCTTCCTTTGGCACACCTGTTCTCTCATCTCTCTTCTCAAATTCACCAGATCCGCCAAAGATGCAGTCCACGCCGGAGCTCCGCCTTGCCCCTCCTCCTTCTCTTTTCTCCTCCCACCCCGACGGTTGAATAGAGGGGATGTTGATTCAAACACTAAGCAGCGGTCAACTGAAGCAGCAGGCCATTCTAATTCAATTGTTGCAGACCACATATTTCTTGGCATTAAAGATACTGATTTTTCAAGTACCATTGGGACAATATCAATTGCTATTATTGGGGATCACAACTTATGCGAGGAGCACACTCCTATTTTTGTGTTTATCGGCATGATGGGTTATGGTGCATCGTACTTAATTGGTATAGCTGGATTACTCTGGGTTATTATGTTAGAGATACGGAGTCACTCCATTTTCTCAATTGAAAGGATTATTCATTCAAGTATCAAGTCATCTGGTGACAACAAATTGATCATATTCTTGGCCCCAACTGTTCTTCTTGTTCGTCAGCAATTTGAGGTTATTAAAGAACACACTACTTTTAAAGTAGAGGAATATTATGGAGCCAAGGGGGTTGATGCATGGGATATGGAGCATTGGGAAAAGGAATTTAAAACCCGTGATATTTTTTTGGATGCCTTAAGAAAGGCATTCTTGACCATAGAAGCAGTATGCTTGATGGTTATGGATGAGTGCCATCGGGCTACCGGAAGCCACCCTTATACAAAGATAATGAAGTCGACCAACTTGGCAATATTTTCTGGATCAGGTGCAGGAATTTATCACAGGTCTAGTATGAAGCCAAAAGTTTTTGGAATGACGGCTTCACTGTACTTCGAAAAGGTGTCTCATCCACAATGGACTGTGAAGATCAAATATCTGAACTTGAAAGCATTTTATTCCCAGATTTATACTATTGAGGATAAAACAGAGATGGAAGTATATCTGTCAACTGCAAAAGAAACTCGTAGATTTTATAAATGCATGAAAGAGTGTGGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

408

Amino Acids

46.13

Weight (kDa)

9.26

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017761)

Species Orthologous Gene IDs
pyrus_communis pycom11g03380
rosa_chinensis RchiOBHm_Chr6g0271181 RchiOBHm_Chr6g0312091
rosa_multiflora Rmu_co8257479.1_g000001
rosa_roxburghii Rroxscaffold_7G00192870
rosa_rugosa Rorug01G0357500 Rorug05G0506300
rosa_samantha Rh5AG241900 Rh5BG511100 Rh6AG509300 Rh7CG510200 Rh7DG477800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1200
AccI GTMKAC 1 cut(s) 962
AciI CCGC 9 cut(s) 72, 94, 100, 175, 204, 210, 279, 308, 388
AclWI GGATC 4 cut(s) 166, 270, 513, 994
AcsI RAATTY 4 cut(s) 162, 266, 830, 999
AcuI CTGAAG 2 cut(s) 48, 417
AfaI GTAC 3 cut(s) 472, 575, 1055
AflII CTTAAG 1 cut(s) 862
AgsI TTSAA 7 cut(s) 355, 375, 420, 468, 647, 663, 1111
AluBI AGCT 3 cut(s) 201, 305, 590
AluI AGCT 3 cut(s) 201, 305, 590
Alw21I GWGCWC 3 cut(s) 203, 307, 528
Alw26I GTCTC 1 cut(s) 1074
AlwI GGATC 4 cut(s) 166, 270, 513, 994
AoxI GGCC 2 cut(s) 406, 705
ApeKI GCWGC 2 cut(s) 385, 401
ApoI RAATTY 4 cut(s) 162, 266, 830, 999
ArsI GACNNNNNNTTYG 4 cut(s) 172, 204, 276, 308
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 3 cut(s) 158, 262, 692
AsuII TTCGAA 1 cut(s) 1059
BanII GRGCYC 2 cut(s) 203, 307
Bbv12I GWGCWC 3 cut(s) 203, 307, 528
BbvI GCAGC 2 cut(s) 397, 413
BccI CCATC 4 cut(s) 550, 895, 927, 1150
BceAI ACGGC 1 cut(s) 1059
BciVI GTATCC 1 cut(s) 1214
BclI TGATCA 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 1074
BfaI CTAG 1 cut(s) 1014
BfrI CTTAAG 1 cut(s) 862
BfuI GTATCC 1 cut(s) 1214
BisI GCNGC 2 cut(s) 386, 402
BlsI GCNGC 2 cut(s) 387, 403
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 2 cut(s) 708, 787
BmsI GCATC 5 cut(s) 173, 277, 578, 790, 847
Bpu14I TTCGAA 1 cut(s) 1059
BsaJI CCNNGG 1 cut(s) 789
BsaWI WCCGGW 1 cut(s) 929
BsaXI ACNNNNNCTCC 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 789
BseGI GGATG 5 cut(s) 25, 370, 862, 916, 1072
BseRI GAGGAG 6 cut(s) 6, 105, 209, 310, 326, 536
BseXI GCAGC 2 cut(s) 397, 413
BsgI GTGCAG 1 cut(s) 1014
BshFI GGCC 2 cut(s) 408, 707
BsiHKAI GWGCWC 3 cut(s) 203, 307, 528
BsiSI CCGG 3 cut(s) 196, 300, 930
BslFI GGGAC 1 cut(s) 493
BsmAI GTCTC 1 cut(s) 1074
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 872
BsnI GGCC 2 cut(s) 408, 707
Bsp119I TTCGAA 1 cut(s) 1059
Bsp1286I GDGCHC 3 cut(s) 203, 307, 528
Bsp143I GATC 7 cut(s) 54, 171, 275, 505, 693, 986, 1092
BspACI CCGC 9 cut(s) 72, 94, 100, 175, 204, 210, 279, 308, 388
BspANI GGCC 2 cut(s) 408, 707
BspLI GGNNCC 2 cut(s) 708, 787
BspPI GGATC 4 cut(s) 166, 270, 513, 994
BspT104I TTCGAA 1 cut(s) 1059
BspTI CTTAAG 1 cut(s) 862
BssECI CCNNGG 1 cut(s) 789
BssMI GATC 7 cut(s) 54, 171, 275, 505, 693, 986, 1092
BssT1I CCWWGG 1 cut(s) 789
Bst4CI ACNGT 4 cut(s) 351, 715, 1053, 1087
Bst6I CTCTTC 4 cut(s) 24, 89, 160, 264
BstAFI CTTAAG 1 cut(s) 862
BstBI TTCGAA 1 cut(s) 1059
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 5 cut(s) 25, 370, 862, 916, 1072
BstKTI GATC 7 cut(s) 57, 174, 278, 508, 696, 989, 1095
BstMAI GTCTC 1 cut(s) 1074
BstMBI GATC 7 cut(s) 54, 171, 275, 505, 693, 986, 1092
BstMWI GCNNNNNNNGC 4 cut(s) 183, 192, 287, 296
BstV1I GCAGC 2 cut(s) 397, 413
BstX2I RGATCY 2 cut(s) 171, 275
BstYI RGATCY 2 cut(s) 171, 275
BsuI GTATCC 1 cut(s) 1214
BsuRI GGCC 2 cut(s) 408, 707
BtsCI GGATG 5 cut(s) 25, 370, 862, 916, 1072
BtsIMutI CAGTG 1 cut(s) 1049
Cac8I GCNNGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 706
Csp6I GTAC 3 cut(s) 471, 574, 1054
CviAII CATG 3 cut(s) 553, 804, 1207
CviQI GTAC 3 cut(s) 471, 574, 1054
DdeI CTNAG 1 cut(s) 381
DpnI GATC 7 cut(s) 56, 173, 277, 507, 695, 988, 1094
DpnII GATC 7 cut(s) 54, 171, 275, 505, 693, 986, 1092
DraI TTTAAA 2 cut(s) 766, 835
Eam1104I CTCTTC 4 cut(s) 24, 89, 160, 264
EarI CTCTTC 4 cut(s) 24, 89, 160, 264
EciI GGCGGA 7 cut(s) 61, 83, 89, 164, 193, 268, 297
Ecl136II GAGCTC 2 cut(s) 201, 305
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 2 cut(s) 203, 307
Eco53kI GAGCTC 2 cut(s) 201, 305
Eco57I CTGAAG 2 cut(s) 48, 417
EcoICRI GAGCTC 2 cut(s) 201, 305
EcoT14I CCWWGG 1 cut(s) 789
EcoT22I ATGCAT 2 cut(s) 805, 1208
EcoT38I GRGCYC 2 cut(s) 203, 307
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 3 cut(s) 556, 807, 1210
FalI AAGNNNNNCTT 4 cut(s) 860, 892, 925, 957
FaqI GGGAC 1 cut(s) 493
FatI CATG 3 cut(s) 552, 803, 1206
FbaI TGATCA 1 cut(s) 693
FblI GTMKAC 1 cut(s) 962
Fnu4HI GCNGC 2 cut(s) 386, 402
FokI GGATG 5 cut(s) 12, 377, 869, 923, 1059
FriOI GRGCYC 2 cut(s) 203, 307
Fsp4HI GCNGC 2 cut(s) 386, 402
FspBI CTAG 1 cut(s) 1014
GluI GCNGC 2 cut(s) 386, 402
HaeIII GGCC 2 cut(s) 408, 707
HapII CCGG 3 cut(s) 196, 300, 930
Hin1II CATG 3 cut(s) 556, 807, 1210
HincII GTYRAC 3 cut(s) 393, 963, 1173
HindII GTYRAC 3 cut(s) 393, 963, 1173
HinfI GANTC 3 cut(s) 79, 371, 625
HpaII CCGG 3 cut(s) 196, 300, 930
HphI GGTGA 3 cut(s) 158, 262, 692
Hpy166II GTNNAC 5 cut(s) 191, 295, 393, 963, 1173
Hpy188I TCNGA 1 cut(s) 1104
Hpy188III TCNNGA 2 cut(s) 877, 984
Hpy8I GTNNAC 5 cut(s) 191, 295, 393, 963, 1173
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 98, 334
HpyCH4III ACNGT 4 cut(s) 351, 715, 1053, 1087
HpyCH4V TGCA 8 cut(s) 186, 290, 428, 569, 803, 995, 1178, 1206
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 192, 287, 296
HpyF3I CTNAG 1 cut(s) 381
Hsp92II CATG 3 cut(s) 556, 807, 1210
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 7 cut(s) 54, 171, 275, 505, 693, 986, 1092
LmnI GCTCC 7 cut(s) 198, 206, 302, 310, 523, 785, 814
Lsp1109I GCAGC 2 cut(s) 397, 413
LweI GCATC 5 cut(s) 173, 277, 578, 790, 847
MaeI CTAG 1 cut(s) 1014
MaeIII GTNAC 2 cut(s) 626, 680
MalI GATC 7 cut(s) 56, 173, 277, 507, 695, 988, 1094
MboI GATC 7 cut(s) 54, 171, 275, 505, 693, 986, 1092
MboII GAAGA 8 cut(s) 11, 76, 116, 147, 220, 251, 710, 1102
MfeI CAATTG 3 cut(s) 420, 489, 642
MflI RGATCY 2 cut(s) 171, 275
MhlI GDGCHC 3 cut(s) 203, 307, 528
MlyI GAGTC 2 cut(s) 73, 634
MmeI TCCRAC 1 cut(s) 62
Mph1103I ATGCAT 2 cut(s) 805, 1208
MseI TTAA 6 cut(s) 450, 578, 747, 765, 834, 863
MspA1I CMGCKG 1 cut(s) 388
MspCI CTTAAG 1 cut(s) 862
MspI CCGG 3 cut(s) 196, 300, 930
MunI CAATTG 3 cut(s) 420, 489, 642
Mva1269I GAATGC 1 cut(s) 872
MwoI GCNNNNNNNGC 4 cut(s) 183, 192, 287, 296
NdeII GATC 7 cut(s) 54, 171, 275, 505, 693, 986, 1092
NlaIII CATG 3 cut(s) 556, 807, 1210
NlaIV GGNNCC 2 cut(s) 708, 787
NmuCI GTSAC 2 cut(s) 626, 680
NsiI ATGCAT 2 cut(s) 805, 1208
NspV TTCGAA 1 cut(s) 1059
PctI GAATGC 1 cut(s) 872
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 387, 403
PleI GAGTC 2 cut(s) 73, 633
PpsI GAGTC 2 cut(s) 73, 633
PsiI TTATAA 1 cut(s) 1200
Psp124BI GAGCTC 2 cut(s) 203, 307
PspN4I GGNNCC 2 cut(s) 708, 787
PspPI GGNCC 1 cut(s) 706
PsuI RGATCY 2 cut(s) 171, 275
RsaI GTAC 3 cut(s) 472, 575, 1055
RsaNI GTAC 3 cut(s) 471, 574, 1054
SacI GAGCTC 2 cut(s) 203, 307
SalI GTCGAC 1 cut(s) 961
SaqAI TTAA 6 cut(s) 450, 578, 747, 765, 834, 863
SatI GCNGC 2 cut(s) 386, 402
Sau3AI GATC 7 cut(s) 54, 171, 275, 505, 693, 986, 1092
Sau96I GGNCC 1 cut(s) 706
SchI GAGTC 2 cut(s) 73, 634
SduI GDGCHC 3 cut(s) 203, 307, 528
SfaNI GCATC 5 cut(s) 173, 277, 578, 790, 847
SfuI TTCGAA 1 cut(s) 1059
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
SsiI CCGC 9 cut(s) 72, 94, 100, 175, 204, 210, 279, 308, 388
SspI AATATT 2 cut(s) 779, 978
SspMI CTAG 1 cut(s) 1014
SstI GAGCTC 2 cut(s) 203, 307
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 4 cut(s) 351, 715, 1053, 1087
TaqI TCGA 3 cut(s) 77, 962, 1059
TatI WGTACW 1 cut(s) 1053
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 6 cut(s) 450, 578, 747, 765, 834, 863
Tru9I TTAA 6 cut(s) 450, 578, 747, 765, 834, 863
TscAI CASTG 1 cut(s) 1056
TseFI GTSAC 2 cut(s) 626, 680
TseI GCWGC 2 cut(s) 385, 401
Tsp45I GTSAC 2 cut(s) 626, 680
TspDTI ATGAA 5 cut(s) 17, 647, 971, 1034, 1223
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 1 cut(s) 1056
Vha464I CTTAAG 1 cut(s) 862
XapI RAATTY 4 cut(s) 162, 266, 830, 999
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 962
XspI CTAG 1 cut(s) 1014
Zsp2I ATGCAT 2 cut(s) 805, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.