Rh7CG510200

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017761
Physical Location & Seq
Reverse (-)
68921541 .. 68932563
11023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG510200.1

Sequence Viewer

Length: 807 bp
ATGTATGGTGGAGTGCAAAAATTTTACTATGTACCAAGTTCCAGGTTGAATAGAGGGGATGTTGATTCAAACACTAAGCAGCGGTCAACTGAAGCAGCAGGCCATTCTAATTCAATTGTTGCAGACCACATATTTCTTGGCATTAAAGATACTGATTTTTCAAGTACCATTGGGACAATATCAATTGCTATTATTGGGGATCACAACTTATGCGAGGAGCACACTCCTATTTTTGTGTTTATCGGCATGATGGGTTATGGTGCATCGTACTTAATTGGTATAGCTGGATTACTCTGGGTTATTATGTTAGAGCAATTTGAGGTTATTAAAGAACACACTACTTTTAAAGTAGAGGAATATTATGGAGCCAAGGGGGTTGATGCATGGGATATGGAGCATTGGGAAAAGGAATTTAAAACCCGTGATATTTTTTTGGATGCCTTAAGAAAGGCATTCTTGACCATAGAAGCAGTATGCTTGATGGTTATGGATGAGTGCCATCGGGCTACCGGAAGCCACCCTTATACAAAGATAATGAAGTCGACCAACTTGGCAATATTTTCTGGATCAGGTGCAGGAATTTATCACAGGTCTAGTATGAAGCCAAAAGTTTTTGGAATGACGGCTTCACTGTACTTCGAAAAGGTGTCTCATCCACAATGGACTGTGAAGATCAAATATCTGAACTTGAAAGCATTTTATTCCCAGATTTATACTATTGAGGATAAAACAGAGATGGAAGTATATCTGTCAACTGCAAAAGAAACTCGTAGATTTTATAAATGCATGAAAGAGTGTGGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

268

Amino Acids

30.58

Weight (kDa)

6.79

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017761)

Species Orthologous Gene IDs
pyrus_communis pycom11g03380
rosa_chinensis RchiOBHm_Chr6g0271181 RchiOBHm_Chr6g0312091
rosa_multiflora Rmu_co8257479.1_g000001
rosa_roxburghii Rroxscaffold_7G00192870
rosa_rugosa Rorug01G0357500 Rorug05G0506300
rosa_samantha Rh5AG241900 Rh5BG511100 Rh6AG509300 Rh7CG510200 Rh7DG477800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AccI GTMKAC 1 cut(s) 542
AciI CCGC 1 cut(s) 82
AclWI GGATC 2 cut(s) 207, 574
AcsI RAATTY 3 cut(s) 20, 410, 579
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 4 cut(s) 33, 166, 269, 635
AflII CTTAAG 1 cut(s) 442
AgsI TTSAA 5 cut(s) 49, 69, 114, 162, 691
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 654
AlwI GGATC 2 cut(s) 207, 574
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 79, 95
ApoI RAATTY 3 cut(s) 20, 410, 579
AsuII TTCGAA 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 91, 107
BccI CCATC 4 cut(s) 244, 475, 507, 730
BceAI ACGGC 1 cut(s) 639
BciT130I CCWGG 1 cut(s) 43
BciVI GTATCC 1 cut(s) 794
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 1 cut(s) 594
BfrI CTTAAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 794
BisI GCNGC 2 cut(s) 80, 96
BlsI GCNGC 2 cut(s) 81, 97
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 3 cut(s) 272, 370, 427
Bpu14I TTCGAA 1 cut(s) 639
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 509
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 4 cut(s) 64, 442, 496, 652
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 91, 107
BsgI GTGCAG 1 cut(s) 594
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 510
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 654
BsmFI GGGAC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 639
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 199, 566, 672
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 207, 574
BspT104I TTCGAA 1 cut(s) 639
BspTI CTTAAG 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 3 cut(s) 199, 566, 672
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 633, 667
BstAFI CTTAAG 1 cut(s) 442
BstBI TTCGAA 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 4 cut(s) 64, 442, 496, 652
BstKTI GATC 3 cut(s) 202, 569, 675
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 3 cut(s) 199, 566, 672
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 91, 107
BsuI GTATCC 1 cut(s) 794
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 4 cut(s) 64, 442, 496, 652
BtsIMutI CAGTG 1 cut(s) 629
Cac8I GCNNGC 1 cut(s) 100
Csp6I GTAC 4 cut(s) 32, 165, 268, 634
CviAII CATG 3 cut(s) 247, 384, 787
CviJI RGCY 7 cut(s) 102, 284, 368, 506, 516, 604, 626
CviKI_1 RGCY 7 cut(s) 102, 284, 368, 506, 516, 604, 626
CviQI GTAC 4 cut(s) 32, 165, 268, 634
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 201, 568, 674
DpnII GATC 3 cut(s) 199, 566, 672
DraI TTTAAA 2 cut(s) 346, 415
Eco130I CCWWGG 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 2 cut(s) 385, 788
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 3 cut(s) 250, 387, 790
FalI AAGNNNNNCTT 4 cut(s) 440, 472, 505, 537
FaqI GGGAC 1 cut(s) 187
FatI CATG 3 cut(s) 246, 383, 786
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 2 cut(s) 80, 96
FokI GGATG 4 cut(s) 71, 449, 503, 639
Fsp4HI GCNGC 2 cut(s) 80, 96
FspBI CTAG 1 cut(s) 594
GluI GCNGC 2 cut(s) 80, 96
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 510
Hin1II CATG 3 cut(s) 250, 387, 790
HincII GTYRAC 3 cut(s) 87, 543, 753
HindII GTYRAC 3 cut(s) 87, 543, 753
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 510
Hpy166II GTNNAC 3 cut(s) 87, 543, 753
Hpy188I TCNGA 1 cut(s) 684
Hpy188III TCNNGA 2 cut(s) 457, 564
Hpy8I GTNNAC 3 cut(s) 87, 543, 753
HpyCH4III ACNGT 2 cut(s) 633, 667
HpyCH4V TGCA 7 cut(s) 16, 122, 263, 383, 575, 758, 786
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 3 cut(s) 250, 387, 790
Kzo9I GATC 3 cut(s) 199, 566, 672
LmnI GCTCC 3 cut(s) 217, 365, 394
Lsp1109I GCAGC 2 cut(s) 91, 107
LweI GCATC 3 cut(s) 272, 370, 427
MaeI CTAG 1 cut(s) 594
MalI GATC 3 cut(s) 201, 568, 674
MboI GATC 3 cut(s) 199, 566, 672
MboII GAAGA 1 cut(s) 682
MfeI CAATTG 2 cut(s) 114, 183
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 8 cut(s) 20, 109, 114, 183, 273, 314, 410, 579
MnlI CCTC 5 cut(s) 47, 208, 313, 346, 715
Mph1103I ATGCAT 2 cut(s) 385, 788
MseI TTAA 6 cut(s) 144, 272, 327, 345, 414, 443
MspA1I CMGCKG 1 cut(s) 82
MspCI CTTAAG 1 cut(s) 442
MspI CCGG 1 cut(s) 510
MspR9I CCNGG 1 cut(s) 43
MunI CAATTG 2 cut(s) 114, 183
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 1 cut(s) 43
NdeII GATC 3 cut(s) 199, 566, 672
NlaIII CATG 3 cut(s) 250, 387, 790
NlaIV GGNNCC 1 cut(s) 367
NsiI ATGCAT 2 cut(s) 385, 788
NspV TTCGAA 1 cut(s) 639
PctI GAATGC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 81, 97
PsiI TTATAA 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 367
RsaI GTAC 4 cut(s) 33, 166, 269, 635
RsaNI GTAC 4 cut(s) 32, 165, 268, 634
SalI GTCGAC 1 cut(s) 541
SaqAI TTAA 6 cut(s) 144, 272, 327, 345, 414, 443
SatI GCNGC 2 cut(s) 80, 96
Sau3AI GATC 3 cut(s) 199, 566, 672
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 47, 286, 324, 574, 593, 648
SfaNI GCATC 3 cut(s) 272, 370, 427
SfuI TTCGAA 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 8 cut(s) 20, 109, 114, 183, 273, 314, 410, 579
SsiI CCGC 1 cut(s) 82
SspI AATATT 2 cut(s) 359, 558
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 633, 667
TaqI TCGA 2 cut(s) 542, 639
TasI AATT 8 cut(s) 20, 109, 114, 183, 273, 314, 410, 579
TatI WGTACW 1 cut(s) 633
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 6 cut(s) 144, 272, 327, 345, 414, 443
Tru9I TTAA 6 cut(s) 144, 272, 327, 345, 414, 443
TscAI CASTG 1 cut(s) 636
TseI GCWGC 2 cut(s) 79, 95
TspDTI ATGAA 3 cut(s) 551, 614, 803
TspRI CASTG 1 cut(s) 636
Vha464I CTTAAG 1 cut(s) 442
XapI RAATTY 3 cut(s) 20, 410, 579
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 542
XspI CTAG 1 cut(s) 594
Zsp2I ATGCAT 2 cut(s) 385, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.