Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004387

Physical Location & Seq

Genomic Coordinates Forward (+)

3081070 .. 3084027

Gene Structure 2958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTGGGATTTTCTTTTCCCTTTGGTTTAGTATCCATCTCTGGCTATCTTGCACCTGAGAAAGAATTTCACTTGCTGGCATCTGTCTTCTTTGGCATCATTCTCTGCAATATTGTTTACAGATTAACGCGGCTTATTAGCCTTCTTAGCGTCGAGGGATATGACAAACTCACCAAAGCAGAAAAAGTTGAATGGAACAACCGGGGGTTCTCAACTGTTCATGCTATTGCCGTAGCATTTGCATCTTTTTACCTTGTAGTGCTGTCAGATACTTTTCATGAGGATCATCGTGATGAGCCAATCGTGAGTAGAAGATCTACCATTTCAGATACAACATTGGGGATCTCCATTGGATATTTTCTGTCAGACTTGGGAATGATCTTTTGGCATTTTCCTGCTTTGGGTGGACTGGAATACGTTTTGCATCATGGACTGTCTATGTACTCAATCTTTCTCTCCCTTATAAGCGGAAAAGGCCAGATTTACATACTAATGGTTCTGTTCTCTGAGAGCACAACTCCTTTCGTAAACATGAGATGGTATTTGGATGTTGCTGGTAAGAAGAACTCTAACCTGTACGTCTTCAATGGCGTAGCATTGTTCCTCGGGTGGCTGGCTGCAAGGATTCTTTTGTTCATTTACTTTTTCGTCCACATGTTTATCCATTTTGATCAAGTCAAGACAATCTTCCCTTTAGGATTTTACAGCTTGCTCCTTGTGCCTCCAATGTTGACTATGATGAATCTCATTTGGTTTTGGAAGATTACCAAAGGTTTGATCAAAACTGTTTCCAAGGCCAAACACAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

271

Amino Acids

30.83

Weight (kDa)

9.04

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	64 - 257	1e-33	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10360 AT4G10360 AT4G10360
fragaria_vesca	FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280
malus_domestica	MD03G1046000.v1.1 MD11G1048300.v1.1
prunus_persica	Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1
pyrus_communis	pycom03g03620 pycom11g03940
rosa_chinensis	RchiOBHm_Chr5g0074081
rosa_laevigata	RLG00000036452
rosa_multiflora	Rmu_sc0000573.1_g000071
rosa_roxburghii	Rroxscaffold_1G00007320
rosa_rugosa	Rorug05G0429100
rosa_samantha	Rh5AG486700 Rh5BG507000 Rh5CG530500 Rh5DG519400
rosa_wichuraiana	Rw5G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccII	CGCG	1 cut(s)	130
AciI	CCGC	2 cut(s)	130, 468
AclWI	GGATC	2 cut(s)	291, 350
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	2 cut(s)	443, 578
AfiI	CCNNNNNNNGG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	2 cut(s)	191, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	367, 399
AluBI	AGCT	1 cut(s)	708
AluI	AGCT	1 cut(s)	708
Alw21I	GWGCWC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	291, 350
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	2 cut(s)	475, 795
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	605
BbsI	GAAGAC	2 cut(s)	79, 574
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	2 cut(s)	44, 531
BceAI	ACGGC	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	43
BclI	TGATCA	2 cut(s)	670, 777
BcnI	CCSGG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	2 cut(s)	131, 618
BlsI	GCNGC	2 cut(s)	132, 619
Bme1390I	CCNGG	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	605
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	4 cut(s)	89, 105, 251, 433
BpiI	GAAGAC	2 cut(s)	79, 574
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	202, 604, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	414
BseDI	CCNNGG	3 cut(s)	202, 604, 792
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	2 cut(s)	48, 498
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	477, 797
BsiHKAI	GWGCWC	1 cut(s)	515
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	401
BsnI	GGCC	2 cut(s)	477, 797
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	6 cut(s)	283, 314, 342, 378, 670, 777
BspACI	CCGC	2 cut(s)	130, 468
BspANI	GGCC	2 cut(s)	477, 797
BspCNI	CTCAG	2 cut(s)	49, 499
BspFNI	CGCG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	277
BspPI	GGATC	2 cut(s)	291, 350
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	3 cut(s)	202, 604, 792
BssMI	GATC	6 cut(s)	283, 314, 342, 378, 670, 777
BssT1I	CCWWGG	1 cut(s)	792
Bst4CI	ACNGT	4 cut(s)	217, 435, 787, 806
BstC8I	GCNNGC	3 cut(s)	78, 615, 710
BstDEI	CTNAG	3 cut(s)	57, 146, 507
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	6 cut(s)	286, 317, 345, 381, 673, 780
BstMBI	GATC	6 cut(s)	283, 314, 342, 378, 670, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 474, 718
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	2 cut(s)	79, 574
BstX2I	RGATCY	2 cut(s)	314, 342
BstYI	RGATCY	2 cut(s)	314, 342
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	477, 797
BtsCI	GGATG	1 cut(s)	553
Cac8I	GCNNGC	3 cut(s)	78, 615, 710
CciI	TCATGA	1 cut(s)	277
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	442, 577
CviAII	CATG	5 cut(s)	221, 278, 428, 532, 655
CviJI	RGCY	9 cut(s)	45, 133, 141, 298, 477, 613, 617, 708, 797
CviKI_1	RGCY	9 cut(s)	45, 133, 141, 298, 477, 613, 617, 708, 797
CviQI	GTAC	2 cut(s)	442, 577
DdeI	CTNAG	3 cut(s)	57, 146, 507
DpnI	GATC	6 cut(s)	285, 316, 344, 380, 672, 779
DpnII	GATC	6 cut(s)	283, 314, 342, 378, 670, 777
Eco130I	CCWWGG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	5 cut(s)	224, 281, 431, 535, 658
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FatI	CATG	5 cut(s)	220, 277, 427, 531, 654
FbaI	TGATCA	2 cut(s)	670, 777
Fnu4HI	GCNGC	2 cut(s)	131, 618
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	2 cut(s)	131, 618
GluI	GCNGC	2 cut(s)	131, 618
HaeIII	GGCC	2 cut(s)	477, 797
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	1 cut(s)	139
Hin1II	CATG	5 cut(s)	224, 281, 431, 535, 658
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	2 cut(s)	625, 742
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	5 cut(s)	118, 407, 529, 652, 732
Hpy188I	TCNGA	4 cut(s)	268, 328, 367, 508
Hpy188III	TCNNGA	4 cut(s)	278, 290, 304, 679
Hpy8I	GTNNAC	5 cut(s)	118, 407, 529, 652, 732
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	4 cut(s)	217, 435, 787, 806
HpyCH4IV	ACGT	2 cut(s)	417, 579
HpyCH4V	TGCA	5 cut(s)	53, 108, 242, 424, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 474, 718
HpyF3I	CTNAG	3 cut(s)	57, 146, 507
HpySE526I	ACGT	2 cut(s)	417, 579
Hsp92II	CATG	5 cut(s)	224, 281, 431, 535, 658
Ksp22I	TGATCA	2 cut(s)	670, 777
Kzo9I	GATC	6 cut(s)	283, 314, 342, 378, 670, 777
LmnI	GCTCC	1 cut(s)	717
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	4 cut(s)	89, 105, 251, 433
MaeII	ACGT	2 cut(s)	417, 579
MalI	GATC	6 cut(s)	285, 316, 344, 380, 672, 779
MboI	GATC	6 cut(s)	283, 314, 342, 378, 670, 777
MboII	GAAGA	6 cut(s)	79, 324, 574, 574, 679, 772
MflI	RGATCY	2 cut(s)	314, 342
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	4 cut(s)	148, 274, 614, 732
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	2 cut(s)	291, 491
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	147, 474, 718
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	6 cut(s)	283, 314, 342, 378, 670, 777
NlaIII	CATG	5 cut(s)	224, 281, 431, 535, 658
NspI	RCATGY	1 cut(s)	658
PagI	TCATGA	1 cut(s)	277
PciI	ACATGT	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	625, 742
PkrI	GCNGC	2 cut(s)	132, 619
PscI	ACATGT	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	314, 342
RsaI	GTAC	2 cut(s)	443, 578
RsaNI	GTAC	2 cut(s)	442, 577
RseI	CAYNNNNRTG	2 cut(s)	291, 491
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	131, 618
Sau3AI	GATC	6 cut(s)	283, 314, 342, 378, 670, 777
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	7 cut(s)	58, 255, 420, 576, 582, 710, 775
SfaNI	GCATC	4 cut(s)	89, 105, 251, 433
SmiMI	CAYNNNNRTG	2 cut(s)	291, 491
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	130, 468
SspI	AATATT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	4 cut(s)	217, 435, 787, 806
TaiI	ACGT	2 cut(s)	420, 582
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	65
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	625, 742
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseI	GCWGC	1 cut(s)	617
TspDTI	ATGAA	4 cut(s)	209, 266, 625, 755
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.