pycom11g04660

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016546
Physical Location & Seq
Forward (+)
3604840 .. 3605217
378 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGTGTCCCCTGCGGCTGATTCTCATATTCCTCTCCGCCACCCTCGCCGGCTTCTTTGTCCTCAGAAACCTCAAATCCGACGGCCCCCAATTGGAAATGCCGCAAGATGAACAAGAAACCCACCAACTGCAAAACCCCAACAAATCTCCCCACCAATTCTCCAAGGTTCGCTCCGCCGTGGAATCGGGGTTCTGGACCGTCGTGGACATGGCCAGCGGACGCTACCTCTGGAGGCATTTGGCGTCGTCGACGGCGGCGAAGCAGTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.16

Weight (kDa)

7.96

Isoelectric Point (pI)

62.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58375
fragaria_vesca FvH4_3g40240
malus_domestica MD03G1054900.v1.1 MD11G1056300.v1.1
prunus_persica Prupe.6G043500_v2.0.a1
pyrus_communis pycom03g04360 pycom11g04660
rosa_chinensis RchiOBHm_Chr5g0025021 RchiOBHm_Chr5g0072461
rosa_laevigata RLG00000033631
rosa_multiflora Rmu_sc0041000.1_g000001
rosa_roxburghii Rroxscaffold_1G00008740
rosa_samantha Rh5AG474900
rosa_wichuraiana Rw5G044090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 248
AciI CCGC 6 cut(s) 13, 36, 101, 174, 216, 254
AcoI YGGCCR 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 91
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AoxI GGCC 2 cut(s) 82, 210
AspS9I GGNCC 2 cut(s) 83, 195
AvaII GGWCC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 212
BceAI ACGGC 3 cut(s) 97, 161, 267
BisI GCNGC 3 cut(s) 14, 101, 255
BlsI GCNGC 3 cut(s) 15, 102, 256
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 83, 195
BmiI GGNNCC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 162, 177
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 162, 177
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 76
BshFI GGCC 2 cut(s) 84, 212
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 2 cut(s) 84, 212
BspACI CCGC 6 cut(s) 13, 36, 101, 174, 216, 254
BspANI GGCC 2 cut(s) 84, 212
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 162, 177
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 49, 214
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 44
BsuRI GGCC 2 cut(s) 84, 212
BtgI CCRYGG 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 49, 214
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 83, 195
CseI GACGC 2 cut(s) 228, 231
CviAII CATG 1 cut(s) 208
CviJI RGCY 4 cut(s) 16, 51, 84, 212
CviKI_1 RGCY 4 cut(s) 16, 51, 84, 212
DdeI CTNAG 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 2 cut(s) 25, 163
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 211
FaiI YATR 2 cut(s) 26, 209
FatI CATG 1 cut(s) 207
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 14, 101, 255
Fsp4HI GCNGC 3 cut(s) 14, 101, 255
GluI GCNGC 3 cut(s) 14, 101, 255
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 2 cut(s) 84, 212
HapII CCGG 1 cut(s) 48
HgaI GACGC 2 cut(s) 228, 231
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 1 cut(s) 211
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 2 cut(s) 19, 182
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 205, 249
Hpy188I TCNGA 3 cut(s) 65, 79, 268
Hpy188III TCNNGA 2 cut(s) 193, 229
Hpy8I GTNNAC 2 cut(s) 205, 249
Hpy99I CGWCG 5 cut(s) 83, 203, 247, 250, 253
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 1 cut(s) 211
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 5 cut(s) 23, 61, 178, 214, 226
MfeI CAATTG 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 89, 155
MluNI TGGCCA 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 102, 246
MnlI CCTC 6 cut(s) 41, 53, 71, 80, 225, 236
Mox20I TGGCCA 1 cut(s) 212
MroNI GCCGGC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 212
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 19, 182
PkrI GCNGC 3 cut(s) 15, 102, 256
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 83, 195
SalI GTCGAC 1 cut(s) 247
SatI GCNGC 3 cut(s) 14, 101, 255
Sau96I GGNCC 2 cut(s) 83, 195
SetI ASST 3 cut(s) 72, 168, 228
SgrDI CGTCGACG 1 cut(s) 247
SinI GGWCC 1 cut(s) 195
Sse9I AATT 2 cut(s) 89, 155
SsiI CCGC 6 cut(s) 13, 36, 101, 174, 216, 254
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 248
TasI AATT 2 cut(s) 89, 155
TauI GCSGC 3 cut(s) 16, 103, 257
TfiI GAWTC 2 cut(s) 19, 182
TspDTI ATGAA 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.