pycom11g04800

Cation H( ) antiporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
3682621 .. 3682950
330 bp
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UTR
Exon/CDS
Intron
pycom11g04800.1

Sequence Viewer

Length: 330 bp
ATGGTTAGAAAATTCCCACTTTACCTTCCCCCAACTCCTTGGGATGGAGGTTCAAACAGATTTCAGGCGTCCGTGAAAGCTCAGGCCGGCAATGTGTCCATAGATTTCAACAATGTTTATCCTTCAATCATAATTTCATGTGGAAAGACTCGACAGGCAGGCTTCTACAGCTTACTTTACGGTGAAAATCCATTGAAAAGTTCATTCACTCTTTTGTTGTTAGAGTTCGCTTTGATCATCGTCCTCACACGTATCCTCCGTGTTCTTCTCAAGCCTCTCAAACAACCCAGAATGGTCTCAGAAGTCATTGTACGTTCCTCTTCTCCCTAA

Protein Analysis

110

Amino Acids

12.18

Weight (kDa)

10.17

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 4 cut(s) 54, 109, 126, 196
AluBI AGCT 2 cut(s) 80, 171
AluI AGCT 2 cut(s) 80, 171
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 194
BarI GAAGNNNNNNTAC 2 cut(s) 294, 326
BccI CCATC 1 cut(s) 38
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 301
BfmI CTRYAG 1 cut(s) 166
BfuI GTATCC 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 95, 312
BshFI GGCC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 301
BsnI GGCC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 234
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 94, 311
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 234
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 88, 160
BstDEI CTNAG 2 cut(s) 81, 298
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 39
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 88, 160
Cfr10I RCCGGY 1 cut(s) 86
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 311
CviAII CATG 1 cut(s) 138
CviJI RGCY 5 cut(s) 80, 86, 162, 171, 274
CviKI_1 RGCY 5 cut(s) 80, 86, 162, 171, 274
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 2 cut(s) 81, 298
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 141
FaiI YATR 3 cut(s) 101, 131, 139
FatI CATG 1 cut(s) 137
FbaI TGATCA 1 cut(s) 234
FokI GGATG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 87
HgaI GACGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 1 cut(s) 141
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 35, 132
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 2 cut(s) 250, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 81, 298
HpySE526I ACGT 2 cut(s) 250, 313
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 141
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 6 cut(s) 50, 68, 100, 140, 144, 301
MaeII ACGT 2 cut(s) 250, 313
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 2 cut(s) 257, 312
MluCI AATT 2 cut(s) 11, 132
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 5 cut(s) 41, 254, 266, 285, 328
MroNI GCCGGC 1 cut(s) 86
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 168
NaeI GCCGGC 1 cut(s) 88
NdeII GATC 1 cut(s) 234
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PdiI GCCGGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 251
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
Sau3AI GATC 1 cut(s) 234
SchI GAGTC 1 cut(s) 142
SetI ASST 6 cut(s) 27, 52, 82, 173, 253, 316
SfcI CTRYAG 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 11, 132
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 2 cut(s) 253, 316
TaqI TCGA 1 cut(s) 151
TasI AATT 2 cut(s) 11, 132
TspDTI ATGAA 2 cut(s) 126, 192
TspGWI ACGGA 2 cut(s) 61, 248
XapI RAATTY 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.