Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010237

Physical Location & Seq

Genomic Coordinates Forward (+)

78353128 .. 78356796

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG499500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGGTTAGGGAATTCCCACTGTACCGTCCCCCGGAGCCCCGCTCTTGGGACCAAAACTACTCTAGTGTATTTCAAGCCACGGTGAAAGCTCAGGCTGTCCCCGGCGGCAGCAAGCTTGGTTTCAACAATGTCTACCCCGCAGCTTTAATCAAATGCAGACCAGCTGCAGGGTCACATCCCTTGGCCTTATATATTGGTGAGAGCCCCTTGAAAACTCCCTTCACACTCGTGTTGCTAGAGATTTTATTGGTCATCTTCGCCACTCGCATTGTTCGTTTTCTTCTCAAGCCTCTCAGACAACCTAGAATTGTCTCGGAAATCATTGGTGGTATATTCATCGGACCGTCGATATTAGGCCGGAGCAAGAAGTTTACCGCCGTTGTGTTCCCGGAAAATTCCCAATTTATACTTCGAAATATCGGATTAATGGGGTTCATGTATTTCGTTTTTCTCTCCGGAGTGAAAATGGATTTCTCCGTGGTAGCAAAAACAAAGAAGAAACAGATTGCCATATCCATTCTTGGAGTGCTGGTCCCTATAATAATGGTAACAATTGTTGGATTGATTTTTCGCAAGTCAATGGACAAAGAGCTAGCAAAACTCTCAACAATCGGTGGGATTGCTGCGACTTTGGCCCTGCCATTGTTCCCTGTCCTCTACCCCATCCTAAAAGAGCTCAATCTCCTTAGCTCGGATATCGGACGGCTTGCACTGTCCATATCGGTGATTAGCGACGTGGTCGGTATCACCTTTATGGTTGTCTTCGAGGCAGCTAAGCAAGGGGAGGGGAAGCCCATAGCCATGTTGTGGTACGTGATTTCTTTGGTATTTATTCTGGCATTCACTGTGCTTGTGGTGAGAAAAGCAATGCAGAAAATTATTGATCACACCCCGGATGGTCAATCCGTTGACCAAGCTTATGTGGTGGGGATTTTGTTGCTGGTTATGGTGATGGGCTTTTTCACGGACATGTTCGGTGTGGCCATTGCTAATGGGCCGTTTTGGTTGGGCCTAGCGATTCCAGATGGGCCCCCGCTCGGTTCGACACTGGTGGAGAGGAGTGAGACGTTAGTAATGGAGATTTTGATGCCATTTTCATTTGCTCTTATAGGTCTTTTCATTGATGTTCAAGGTATGATTATGATTGGTTGGGAGGGGATGGCACCATTGTTTGCTATGGTTGTAACTGGTTATGTGTCTAAATTCATAGCTACTTTTGCTACTTCTATGTTTTTTGAAGTGCCATTCCGAGATAGTGCTGTGCTTAGCCTTGTTATGAGCCTGAAAGGTCAAGTGGAGCTTATGCTTTTCACCCATTGGATGGACAAAAAGATGGTACAGATACCAGGATTCACGATGCTTGTGCTACTAATAACAATAGTGACTGCATTAGCCACACCCTTGATCAGCATCCTCTATGATCCAACAAGGCCATATATGGTTCACAAAAGAAGAACAATCCAGAACACCCCAACCACAGACGCAGAACTTCGAATAGTTCTCGTCATATACGATGAAGATAGCACAGCTCCCCTCATCAATCTTCTTGAAGTCTCCAATCCAACAACAAGCACCCCGTTCTCGATCTTTGCTATTCGCCTCATCGAGCTTGTTGGCCGTGCTTCTCCTGTGTTTATAGACCATCAAAAGCAAGAAGACGAGGCTGAGTTGAAGTATGCAGTGTCTCAAAACATCCACAATGCCTTGAAATTGTATCAAGAAAGCAAAGGTGACTATGTCAAGCTCTTTAACTTCACAGCCATAGCACCAAACAAAACAATGTACCAAGACATTTGCGAGCTAGCACTTTTGAAAAGAGCCACACTTATGATCTTACCTTTTCACAAGGAATGTCTGGACACTCTTGGAGGTACATTGACAGAAATGGTGACAAGTGGGATTAGAAGTGTCAACGCAAATGTTATAGCACATTCGCCTTGCTCGGTTGCTGTTCTAGTTGATAAGGGTCACCTCAGACATCCACTAATGGCATTCCGAAACTCCGAGCTACACTTTGTGGTGTTGTTTTTGGGTGGTGCTGACGCGAGGGAGGCTTTGTGTTTTGCTGATAGGATGGTTGGGAATCCTAACGTGTCGTTAACCGTGATTCGGTTTCTTTCATACAATTTCGAAGGGGATAATGAGATGGAGAAGAAAATGGATGATGGGGTTGTCACATGGTTTTGGGTTAAGAATGAGAGGAATGATAGGGTTTCTTATAGAGAGGTGGTAGTGAAGAATGGGGCAGAAACAGTAGGAGCAATTCGAGCTTTGAATTATGGGGAGGATAATACTTGTGATGTTTGGATTACGGGGAGGAAACAAGGGATCAATCCTGTTCTTCTGGAAGGGTTATCAAATTGGAGTGAGAATGAAGAATTGGGTATAATTGGGGACTTTGTTTCCTCTGATGATTTTGGTGGCACTGCTTCTGTTTTAGTTGTACAGCAGCAAATGTTGAGAGGTCAAGGGACAGGTAAAGCTGGAATGGAAAAGCTTACAGCTGGCCTAAATCTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

840

Amino Acids

92.75

Weight (kDa)

7.16

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	88 - 469	1.2e-34	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	529 - 656	2.1e-10	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	672 - 818	8.3e-09	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37060 AT5G58460
fragaria_vesca	FvH4_3g39730
malus_domestica	MD03G1056200.v1.1 MD11G1057100.v1.1 MD11G1057400.v1.1
prunus_persica	Prupe.6G048600_v2.0.a1
pyrus_communis	pycom11g04800 pycom11g04810
rosa_chinensis	RchiOBHm_Chr5g0071611
rosa_laevigata	RLG00000036229
rosa_multiflora	Rmu_sc0005745.1_g000024
rosa_roxburghii	Rroxscaffold_1G00009570
rosa_rugosa	Rorug05G0413600 Rorug05G0413600 Rorug05G0413600
rosa_samantha	Rh5AG469500 Rh5BG488900 Rh5CG512800 Rh5DG499500
rosa_wichuraiana	Rw5G043620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1162
AccB7I	CCANNNNNTGG	2 cut(s)	807, 1321
AccBSI	CCGCTC	2 cut(s)	42, 1036
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	2045
AccIII	TCCGGA	1 cut(s)	455
AciI	CCGC	5 cut(s)	40, 105, 138, 375, 1034
AclWI	GGATC	2 cut(s)	1415, 2336
AcoI	YGGCCR	2 cut(s)	981, 1615
AcsI	RAATTY	3 cut(s)	11, 394, 1202
AdeI	CACNNNGTG	1 cut(s)	2017
AfaI	GTAC	6 cut(s)	23, 812, 1338, 1784, 1873, 2445
AfiI	CCNNNNNNNGG	9 cut(s)	31, 45, 46, 167, 691, 807, 1037, 1321, 2109
AflIII	ACRYGT	2 cut(s)	969, 2091
AjiI	CACGTC	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	1345
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 425, 2363, 2395
AleI	CACNNNNGTG	1 cut(s)	227
Alw21I	GWGCWC	1 cut(s)	678
Alw26I	GTCTC	4 cut(s)	316, 1058, 1558, 1689
AlwI	GGATC	2 cut(s)	1415, 2336
Aor13HI	TCCGGA	1 cut(s)	455
ApaI	GGGCCC	1 cut(s)	1032
ApeKI	GCWGC	6 cut(s)	108, 140, 164, 623, 770, 2449
ApoI	RAATTY	3 cut(s)	11, 394, 1202
AseI	ATTAAT	1 cut(s)	425
AspS9I	GGNCC	8 cut(s)	49, 341, 532, 634, 995, 1009, 1028, 1029
AsuC2I	CCSGG	4 cut(s)	32, 102, 389, 893
AsuII	TTCGAA	3 cut(s)	412, 1492, 2130
AsuNHI	GCTAGC	2 cut(s)	592, 1801
AvaII	GGWCC	3 cut(s)	49, 341, 532
BaeGI	GKGCMC	1 cut(s)	1032
BalI	TGGCCA	1 cut(s)	983
BanI	GGYRCC	1 cut(s)	1162
BanII	GRGCYC	4 cut(s)	39, 206, 678, 1032
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	754, 1662
Bbv12I	GWGCWC	1 cut(s)	678
BbvI	GCAGC	6 cut(s)	120, 151, 152, 610, 782, 2461
BceAI	ACGGC	4 cut(s)	362, 719, 982, 1602
BcgI	CGANNNNNNTGC	2 cut(s)	1345, 1379
BciT130I	CCWGG	1 cut(s)	1347
BclI	TGATCA	2 cut(s)	883, 1404
BcnI	CCSGG	4 cut(s)	32, 102, 389, 893
BcoDI	GTCTC	4 cut(s)	316, 1058, 1558, 1689
BfaI	CTAG	7 cut(s)	63, 236, 303, 593, 1013, 1802, 1955
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	7 cut(s)	106, 109, 141, 165, 624, 771, 2450
BlpI	GCTNAGC	2 cut(s)	774, 1265
BlsI	GCNGC	7 cut(s)	107, 110, 142, 166, 625, 772, 2451
Bme1390I	CCNGG	5 cut(s)	32, 102, 389, 893, 1347
Bme18I	GGWCC	3 cut(s)	49, 341, 532
BmgBI	CACGTC	1 cut(s)	736
BmgT120I	GGNCC	8 cut(s)	49, 341, 532, 634, 995, 1009, 1028, 1029
BmiI	GGNNCC	6 cut(s)	36, 50, 534, 1030, 1031, 1164
BmrFI	CCNGG	5 cut(s)	32, 102, 389, 893, 1347
BmsI	GCATC	3 cut(s)	1077, 1347, 1419
BmtI	GCTAGC	2 cut(s)	596, 1805
BpiI	GAAGAC	2 cut(s)	754, 1662
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
Bpu10I	CCTNAGC	2 cut(s)	90, 686
Bpu1102I	GCTNAGC	2 cut(s)	774, 1265
Bpu14I	TTCGAA	3 cut(s)	412, 1492, 2130
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	4 cut(s)	32, 102, 389, 893
BsaAI	YACGTR	1 cut(s)	814
BsaBI	GATNNNNATC	1 cut(s)	1409
BsaJI	CCNNGG	6 cut(s)	30, 78, 100, 180, 477, 891
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 2042, 2072
Bsc4I	CCNNNNNNNGG	9 cut(s)	31, 45, 46, 167, 691, 807, 1037, 1321, 2109
Bse1I	ACTGG	2 cut(s)	1053, 1192
Bse3DI	GCAATG	2 cut(s)	873, 984
Bse8I	GATNNNNATC	1 cut(s)	1409
BseAI	TCCGGA	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	1347
BseDI	CCNNGG	6 cut(s)	30, 78, 100, 180, 477, 891
BseJI	GATNNNNATC	1 cut(s)	1409
BseLI	CCNNNNNNNGG	9 cut(s)	31, 45, 46, 167, 691, 807, 1037, 1321, 2109
BseMI	GCAATG	2 cut(s)	873, 984
BseMII	CTCAG	4 cut(s)	104, 307, 1656, 1987
BseNI	ACTGG	2 cut(s)	1053, 1192
BseRI	GAGGAG	1 cut(s)	1072
BseSI	GKGCMC	1 cut(s)	1032
BseXI	GCAGC	6 cut(s)	120, 151, 152, 610, 782, 2461
Bsh1236I	CGCG	1 cut(s)	2045
BshNI	GGYRCC	1 cut(s)	1162
BsiHKAI	GWGCWC	1 cut(s)	678
BsiSI	CCGG	6 cut(s)	32, 102, 358, 389, 456, 893
BslFI	GGGAC	6 cut(s)	12, 62, 83, 518, 2408, 2485
BslI	CCNNNNNNNGG	9 cut(s)	31, 45, 46, 167, 691, 807, 1037, 1321, 2109
BsmAI	GTCTC	4 cut(s)	316, 1058, 1558, 1689
BsmBI	CGTCTC	1 cut(s)	1058
BsmFI	GGGAC	6 cut(s)	12, 62, 83, 518, 2408, 2485
BsmI	GAATGC	2 cut(s)	839, 1991
Bsp119I	TTCGAA	3 cut(s)	412, 1492, 2130
Bsp120I	GGGCCC	1 cut(s)	1028
Bsp1286I	GDGCHC	4 cut(s)	39, 206, 678, 1032
Bsp13I	TCCGGA	1 cut(s)	455
Bsp1407I	TGTACA	1 cut(s)	2443
Bsp143I	GATC	6 cut(s)	883, 1404, 1420, 1584, 1830, 2328
Bsp1720I	GCTNAGC	2 cut(s)	774, 1265
BspACI	CCGC	5 cut(s)	40, 105, 138, 375, 1034
BspCNI	CTCAG	4 cut(s)	103, 306, 1657, 1986
BspEI	TCCGGA	1 cut(s)	455
BspFNI	CGCG	1 cut(s)	2045
BspLI	GGNNCC	6 cut(s)	36, 50, 534, 1030, 1031, 1164
BspMAI	CTGCAG	1 cut(s)	169
BspOI	GCTAGC	2 cut(s)	596, 1805
BspPI	GGATC	2 cut(s)	1415, 2336
BspT104I	TTCGAA	3 cut(s)	412, 1492, 2130
BspT107I	GGYRCC	1 cut(s)	1162
BsrBI	CCGCTC	2 cut(s)	42, 1036
BsrDI	GCAATG	2 cut(s)	873, 984
BsrGI	TGTACA	1 cut(s)	2443
BsrI	ACTGG	2 cut(s)	1053, 1192
BssECI	CCNNGG	6 cut(s)	30, 78, 100, 180, 477, 891
BssMI	GATC	6 cut(s)	883, 1404, 1420, 1584, 1830, 2328
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	1347
Bst4CI	ACNGT	8 cut(s)	21, 26, 82, 345, 714, 847, 2104, 2254
BstAUI	TGTACA	1 cut(s)	2443
BstBAI	YACGTR	1 cut(s)	814
BstBI	TTCGAA	3 cut(s)	412, 1492, 2130
BstC8I	GCNNGC	6 cut(s)	113, 594, 708, 1799, 1803, 2506
BstDEI	CTNAG	7 cut(s)	90, 293, 686, 774, 1265, 1665, 1973
BstDSI	CCRYGG	2 cut(s)	78, 477
BstEII	GGTNACC	1 cut(s)	1967
BstFNI	CGCG	1 cut(s)	2045
BstKTI	GATC	6 cut(s)	886, 1407, 1423, 1587, 1833, 2331
BstMAI	GTCTC	4 cut(s)	316, 1058, 1558, 1689
BstMBI	GATC	6 cut(s)	883, 1404, 1420, 1584, 1830, 2328
BstMWI	GCNNNNNNNGC	4 cut(s)	632, 1217, 2051, 2267
BstNI	CCWGG	1 cut(s)	1347
BstNSI	RCATGY	1 cut(s)	973
BstPI	GGTNACC	1 cut(s)	1967
BstSCI	CCNGG	5 cut(s)	30, 100, 387, 891, 1345
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	1032
BstUI	CGCG	1 cut(s)	2045
BstV1I	GCAGC	6 cut(s)	120, 151, 152, 610, 782, 2461
BstV2I	GAAGAC	2 cut(s)	754, 1662
BtgI	CCRYGG	2 cut(s)	78, 477
BtrI	CACGTC	1 cut(s)	736
BtsI	GCAGTG	2 cut(s)	1686, 2424
BtsIMutI	CAGTG	6 cut(s)	17, 710, 843, 1046, 1686, 2424
Cac8I	GCNNGC	6 cut(s)	113, 594, 708, 1799, 1803, 2506
Cfr13I	GGNCC	8 cut(s)	49, 341, 532, 634, 995, 1009, 1028, 1029
CpoI	CGGWCCG	1 cut(s)	341
CseI	GACGC	2 cut(s)	1490, 2051
Csp6I	GTAC	6 cut(s)	22, 811, 1337, 1783, 1872, 2444
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CspI	CGGWCCG	1 cut(s)	341
CviAII	CATG	4 cut(s)	436, 802, 970, 2178
CviQI	GTAC	6 cut(s)	22, 811, 1337, 1783, 1872, 2444
DdeI	CTNAG	7 cut(s)	90, 293, 686, 774, 1265, 1665, 1973
DpnI	GATC	6 cut(s)	885, 1406, 1422, 1586, 1832, 2330
DpnII	GATC	6 cut(s)	883, 1404, 1420, 1584, 1830, 2328
DraIII	CACNNNGTG	1 cut(s)	2017
EaeI	YGGCCR	2 cut(s)	981, 1615
Ecl136II	GAGCTC	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	4 cut(s)	39, 206, 678, 1032
Eco32I	GATATC	1 cut(s)	697
Eco47I	GGWCC	3 cut(s)	49, 341, 532
Eco53kI	GAGCTC	1 cut(s)	676
Eco91I	GGTNACC	1 cut(s)	1967
EcoICRI	GAGCTC	1 cut(s)	676
EcoO109I	RGGNCCY	1 cut(s)	1029
EcoO65I	GGTNACC	1 cut(s)	1967
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	1345
EcoRV	GATATC	1 cut(s)	697
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	4 cut(s)	39, 206, 678, 1032
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	1058
FaeI	CATG	4 cut(s)	439, 805, 973, 2181
FalI	AAGNNNNNCTT	2 cut(s)	1284, 1316
FaqI	GGGAC	6 cut(s)	12, 62, 83, 518, 2408, 2485
FatI	CATG	4 cut(s)	435, 801, 969, 2177
FauI	CCCGC	3 cut(s)	47, 145, 1041
FbaI	TGATCA	2 cut(s)	883, 1404
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	7 cut(s)	106, 109, 141, 165, 624, 771, 2450
FriOI	GRGCYC	4 cut(s)	39, 206, 678, 1032
Fsp4HI	GCNGC	7 cut(s)	106, 109, 141, 165, 624, 771, 2450
FspBI	CTAG	7 cut(s)	63, 236, 303, 593, 1013, 1802, 1955
GluI	GCNGC	7 cut(s)	106, 109, 141, 165, 624, 771, 2450
HapII	CCGG	6 cut(s)	32, 102, 358, 389, 456, 893
HgaI	GACGC	2 cut(s)	1490, 2051
Hin1II	CATG	4 cut(s)	439, 805, 973, 2181
HincII	GTYRAC	3 cut(s)	910, 1912, 2100
HindII	GTYRAC	3 cut(s)	910, 1912, 2100
HindIII	AAGCTT	3 cut(s)	113, 915, 2495
HinfI	GANTC	4 cut(s)	1018, 1350, 2083, 2107
HpaI	GTTAAC	1 cut(s)	2100
HpaII	CCGG	6 cut(s)	32, 102, 358, 389, 456, 893
Hpy166II	GTNNAC	6 cut(s)	133, 372, 910, 1444, 1912, 2100
Hpy188III	TCNNGA	9 cut(s)	456, 1022, 1354, 1462, 1547, 1582, 1718, 1856, 2345
Hpy8I	GTNNAC	6 cut(s)	133, 372, 910, 1444, 1912, 2100
Hpy99I	CGWCG	2 cut(s)	349, 737
HpyAV	CCTTC	3 cut(s)	229, 2126, 2342
HpyCH4III	ACNGT	8 cut(s)	21, 26, 82, 345, 714, 847, 2104, 2254
HpyCH4IV	ACGT	4 cut(s)	735, 813, 1067, 2091
HpyCH4V	TGCA	6 cut(s)	156, 167, 710, 871, 1388, 1679
HpyF10VI	GCNNNNNNNGC	4 cut(s)	632, 1217, 2051, 2267
HpyF3I	CTNAG	7 cut(s)	90, 293, 686, 774, 1265, 1665, 1973
HpySE526I	ACGT	4 cut(s)	735, 813, 1067, 2091
Hsp92II	CATG	4 cut(s)	439, 805, 973, 2181
Kpn2I	TCCGGA	1 cut(s)	455
Ksp22I	TGATCA	2 cut(s)	883, 1404
KspAI	GTTAAC	1 cut(s)	2100
Kzo9I	GATC	6 cut(s)	883, 1404, 1420, 1584, 1830, 2328
LmnI	GCTCC	5 cut(s)	34, 360, 1297, 1534, 2258
Lsp1109I	GCAGC	6 cut(s)	120, 151, 152, 610, 782, 2461
LweI	GCATC	3 cut(s)	1077, 1347, 1419
MaeI	CTAG	7 cut(s)	63, 236, 303, 593, 1013, 1802, 1955
MaeII	ACGT	4 cut(s)	735, 813, 1067, 2091
MaeIII	GTNAC	8 cut(s)	171, 547, 1183, 1381, 1730, 1888, 1967, 2173
MalI	GATC	6 cut(s)	885, 1406, 1422, 1586, 1832, 2330
MbiI	CCGCTC	2 cut(s)	42, 1036
MboI	GATC	6 cut(s)	883, 1404, 1420, 1584, 1830, 2328
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	4 cut(s)	39, 206, 678, 1032
MlsI	TGGCCA	1 cut(s)	983
MluNI	TGGCCA	1 cut(s)	983
MmeI	TCCRAC	3 cut(s)	538, 1448, 1586
Mox20I	TGGCCA	1 cut(s)	983
MroI	TCCGGA	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	983
MseI	TTAA	5 cut(s)	146, 425, 1749, 2099, 2190
MslI	CAYNNNNRTG	6 cut(s)	227, 722, 752, 800, 968, 1826
Msp20I	TGGCCA	1 cut(s)	983
MspA1I	CMGCKG	2 cut(s)	164, 2504
MspI	CCGG	6 cut(s)	32, 102, 358, 389, 456, 893
MspR9I	CCNGG	5 cut(s)	32, 102, 389, 893, 1347
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	2 cut(s)	839, 1991
MvaI	CCWGG	1 cut(s)	1347
MvnI	CGCG	1 cut(s)	2045
MwoI	GCNNNNNNNGC	4 cut(s)	632, 1217, 2051, 2267
NciI	CCSGG	4 cut(s)	32, 102, 389, 893
NdeII	GATC	6 cut(s)	883, 1404, 1420, 1584, 1830, 2328
NheI	GCTAGC	2 cut(s)	592, 1801
NlaIII	CATG	4 cut(s)	439, 805, 973, 2181
NlaIV	GGNNCC	6 cut(s)	36, 50, 534, 1030, 1031, 1164
NmuCI	GTSAC	6 cut(s)	171, 1381, 1730, 1888, 1967, 2173
NspI	RCATGY	1 cut(s)	973
NspV	TTCGAA	3 cut(s)	412, 1492, 2130
OliI	CACNNNNGTG	1 cut(s)	227
PciI	ACATGT	1 cut(s)	969
PcsI	WCGNNNNNNNCGW	2 cut(s)	271, 1509
PctI	GAATGC	2 cut(s)	839, 1991
PfeI	GAWTC	4 cut(s)	1018, 1350, 2083, 2107
PflFI	GACNNNGTC	2 cut(s)	737, 1736
PflMI	CCANNNNNTGG	2 cut(s)	807, 1321
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	7 cut(s)	107, 110, 142, 166, 625, 772, 2451
Ppu21I	YACGTR	1 cut(s)	814
PscI	ACATGT	1 cut(s)	969
PshBI	ATTAAT	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	1345
PspEI	GGTNACC	1 cut(s)	1967
PspGI	CCWGG	1 cut(s)	1345
PspN4I	GGNNCC	6 cut(s)	36, 50, 534, 1030, 1031, 1164
PspOMI	GGGCCC	1 cut(s)	1028
PspPI	GGNCC	8 cut(s)	49, 341, 532, 634, 995, 1009, 1028, 1029
PstI	CTGCAG	1 cut(s)	169
PsyI	GACNNNGTC	2 cut(s)	737, 1736
PvuII	CAGCTG	2 cut(s)	164, 2504
RsaI	GTAC	6 cut(s)	23, 812, 1338, 1784, 1873, 2445
RsaNI	GTAC	6 cut(s)	22, 811, 1337, 1783, 1872, 2444
RseI	CAYNNNNRTG	6 cut(s)	227, 722, 752, 800, 968, 1826
Rsr2I	CGGWCCG	1 cut(s)	341
RsrII	CGGWCCG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	678
SaqAI	TTAA	5 cut(s)	146, 425, 1749, 2099, 2190
SatI	GCNGC	7 cut(s)	106, 109, 141, 165, 624, 771, 2450
Sau3AI	GATC	6 cut(s)	883, 1404, 1420, 1584, 1830, 2328
Sau96I	GGNCC	8 cut(s)	49, 341, 532, 634, 995, 1009, 1028, 1029
ScrFI	CCNGG	5 cut(s)	32, 102, 389, 893, 1347
SduI	GDGCHC	4 cut(s)	39, 206, 678, 1032
SfaNI	GCATC	3 cut(s)	1077, 1347, 1419
SfcI	CTRYAG	1 cut(s)	165
SfuI	TTCGAA	3 cut(s)	412, 1492, 2130
SinI	GGWCC	3 cut(s)	49, 341, 532
SmiMI	CAYNNNNRTG	6 cut(s)	227, 722, 752, 800, 968, 1826
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SsiI	CCGC	5 cut(s)	40, 105, 138, 375, 1034
SspMI	CTAG	7 cut(s)	63, 236, 303, 593, 1013, 1802, 1955
SstI	GAGCTC	1 cut(s)	678
StyD4I	CCNGG	5 cut(s)	30, 100, 387, 891, 1345
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	8 cut(s)	21, 26, 82, 345, 714, 847, 2104, 2254
TaiI	ACGT	4 cut(s)	738, 816, 1070, 2094
TaqI	TCGA	9 cut(s)	347, 412, 765, 1043, 1492, 1583, 1605, 2130, 2266
TatI	WGTACW	1 cut(s)	2443
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	4 cut(s)	1018, 1350, 2083, 2107
Tru1I	TTAA	5 cut(s)	146, 425, 1749, 2099, 2190
Tru9I	TTAA	5 cut(s)	146, 425, 1749, 2099, 2190
TscAI	CASTG	6 cut(s)	24, 717, 850, 1053, 1686, 2431
TseFI	GTSAC	6 cut(s)	171, 1381, 1730, 1888, 1967, 2173
TseI	GCWGC	6 cut(s)	108, 140, 164, 623, 770, 2449
Tsp45I	GTSAC	6 cut(s)	171, 1381, 1730, 1888, 1967, 2173
TspDTI	ATGAA	8 cut(s)	325, 424, 1086, 1108, 1195, 1530, 2109, 2388
TspGWI	ACGGA	3 cut(s)	466, 895, 980
TspRI	CASTG	6 cut(s)	24, 717, 850, 1053, 1686, 2431
Tth111I	GACNNNGTC	2 cut(s)	737, 1736
Van91I	CCANNNNNTGG	2 cut(s)	807, 1321
VpaK11BI	GGWCC	3 cut(s)	49, 341, 532
VspI	ATTAAT	1 cut(s)	425
XapI	RAATTY	3 cut(s)	11, 394, 1202
XceI	RCATGY	1 cut(s)	973
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	7 cut(s)	63, 236, 303, 593, 1013, 1802, 1955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.