Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008012

Physical Location & Seq

Genomic Coordinates Forward (+)

3856945 .. 3859709

Gene Structure 2765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGACCCGTAAATGTATACAGAAACCTTGTAGCTCTCTCTCTCTCTCTCTCTCCCCCCCTACACAATTCAAGCTCTGCGCGCTCTCTCTCTCTCTCTGCGCGACCATGCTTTCAGGGGACATTCCACCGAACCAAACCATATACATTAAGAACCTCAATGAGAAAATCAAAAAAGAAGAATTGAAGAGGTCCCTCTATTGCTTATTCTCTCAATATGGAAGGATTTTGGATGTTGTTGCCTTGAAGACACCCAGGCTTCGGGGGCAAGCATGGGTTGCATTTCTAGAAGTGGCTTCTGCTAGTAATGCTGTGCGGCAGATGCAAAACTTTCCATTTTATGATAAACCCATGCGGATTCAATATGCCAAAACAAAGTCAGATTGCATTGCTGAAGCAGAAGGAACCTTAGCTCCAAAAGAAAAGAAAAGGAAGCAGGAAGACAAAGCTGAAAGAAAGCGGCGAGGTGATGAAGGGCAACAACCTGCTACTGAAACTGGTGCAGCTGCTGAAAATGGAGGGAGAACGGAAGCAGCAGCTCCGAACAATATTCTGTTCATTGAGAATTTGCCCCACGAAACCACTAGCGATATGCTCGAACTGCTCTTCAAACAGTTTGCAGGGTTTAGGGAAGTCAGGATGATTGATGCAAAGCCAGGCATCGCCTTTGTAGAGTATGAAGATGACATTCAGTCATCGATCGCCATGCAGGCCCTTCAAGGCTTCAAAGTCACCCCTCAAAACGCTGTTGCCATCACTTTTGCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

257

Amino Acids

28.59

Weight (kDa)

9.14

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	47 - 117	1.7e-08	RNA recognition motif
RRM_1	PF00076	184 - 243	2.4e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT1G06960 AT2G30260
fragaria_vesca	FvH4_3g39900
malus_domestica	MD03G1057700.v1.1 MD11G1060000.v1.1
prunus_persica	Prupe.6G046700_v2.0.a1 Prupe.6G046700_v2.0.a1
pyrus_communis	pycom03g04610 pycom11g04960
rosa_chinensis	RchiOBHm_Chr5g0071861
rosa_laevigata	RLG00000036256
rosa_multiflora	Rmu_sc0025243.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009300
rosa_rugosa	Rorug05G0415100 Rorug05G0415100
rosa_samantha	Rh5AG471300 Rh5BG491000 Rh5CG514900 Rh5DG502700
rosa_wichuraiana	Rw5G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	2 cut(s)	80, 101
AciI	CCGC	3 cut(s)	313, 352, 457
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	7 cut(s)	70, 184, 244, 359, 607, 716, 724
AhdI	GACNNNNNGTC	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	251, 652
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	6 cut(s)	33, 73, 410, 446, 503, 536
AluI	AGCT	6 cut(s)	33, 73, 410, 446, 503, 536
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	1 cut(s)	708
ApeKI	GCWGC	4 cut(s)	500, 503, 530, 533
ApoI	RAATTY	1 cut(s)	562
AspLEI	GCGC	3 cut(s)	80, 82, 101
AspS9I	GGNCC	2 cut(s)	189, 709
AsuHPI	GGTGA	2 cut(s)	476, 721
AvaII	GGWCC	1 cut(s)	189
BbsI	GAAGAC	2 cut(s)	251, 444
BbvI	GCAGC	4 cut(s)	490, 512, 542, 545
BccI	CCATC	1 cut(s)	758
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	2 cut(s)	253, 654
BfaI	CTAG	3 cut(s)	284, 300, 582
BfuAI	ACCTGC	1 cut(s)	490
BglI	GCCNNNNNGGC	1 cut(s)	707
BisI	GCNGC	6 cut(s)	314, 458, 501, 504, 531, 534
BlsI	GCNGC	6 cut(s)	315, 459, 502, 505, 532, 535
Bme1390I	CCNGG	2 cut(s)	253, 654
Bme18I	GGWCC	1 cut(s)	189
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	189, 709
BmiI	GGNNCC	2 cut(s)	191, 403
BmrFI	CCNGG	2 cut(s)	253, 654
BmsI	GCATC	3 cut(s)	309, 634, 666
BpiI	GAAGAC	2 cut(s)	251, 444
Bpu10I	CCTNAGC	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	695
BsaJI	CCNNGG	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	253, 654
BseCI	ATCGAT	1 cut(s)	695
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	235, 642
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMI	GCAATG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	499
BsePI	GCGCGC	1 cut(s)	78
BseXI	GCAGC	4 cut(s)	490, 512, 542, 545
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	2 cut(s)	80, 101
Bsh1285I	CGRYCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	710
BshVI	ATCGAT	1 cut(s)	695
BsiEI	CGRYCG	1 cut(s)	699
BslFI	GGGAC	2 cut(s)	131, 175
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	131, 175
BsnI	GGCC	1 cut(s)	710
Bsp143I	GATC	1 cut(s)	696
BspACI	CCGC	3 cut(s)	313, 352, 457
BspANI	GGCC	1 cut(s)	710
BspDI	ATCGAT	1 cut(s)	695
BspFNI	CGCG	2 cut(s)	80, 101
BspLI	GGNNCC	2 cut(s)	191, 403
BspMI	ACCTGC	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	251
BssHII	GCGCGC	1 cut(s)	78
BssMI	GATC	1 cut(s)	696
BssNAI	GTATAC	1 cut(s)	17
Bst1107I	GTATAC	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	253, 654
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	2 cut(s)	179, 608
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	80, 267, 708
BstDEI	CTNAG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	235, 642
BstFNI	CGCG	2 cut(s)	80, 101
BstHHI	GCGC	3 cut(s)	80, 82, 101
BstKTI	GATC	1 cut(s)	699
BstMBI	GATC	1 cut(s)	696
BstMCI	CGRYCG	1 cut(s)	699
BstMWI	GCNNNNNNNGC	7 cut(s)	79, 262, 275, 305, 319, 598, 707
BstNI	CCWGG	2 cut(s)	253, 654
BstSCI	CCNGG	2 cut(s)	251, 652
BstUI	CGCG	2 cut(s)	80, 101
BstV1I	GCAGC	4 cut(s)	490, 512, 542, 545
BstV2I	GAAGAC	2 cut(s)	251, 444
BstZ17I	GTATAC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	710
BsuTUI	ATCGAT	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	235, 642
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	3 cut(s)	80, 267, 708
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	3 cut(s)	80, 82, 101
Cfr13I	GGNCC	2 cut(s)	189, 709
ClaI	ATCGAT	1 cut(s)	695
CviAII	CATG	4 cut(s)	106, 270, 349, 703
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	1 cut(s)	698
DpnII	GATC	1 cut(s)	696
DriI	GACNNNNNGTC	1 cut(s)	688
Eam1104I	CTCTTC	2 cut(s)	179, 608
Eam1105I	GACNNNNNGTC	1 cut(s)	688
EarI	CTCTTC	2 cut(s)	179, 608
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	411
EcoO109I	RGGNCCY	2 cut(s)	189, 709
EcoRII	CCWGG	2 cut(s)	251, 652
FaeI	CATG	4 cut(s)	109, 273, 352, 706
FaqI	GGGAC	2 cut(s)	131, 175
FatI	CATG	4 cut(s)	105, 269, 348, 702
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	6 cut(s)	314, 458, 501, 504, 531, 534
FokI	GGATG	2 cut(s)	242, 649
Fsp4HI	GCNGC	6 cut(s)	314, 458, 501, 504, 531, 534
FspBI	CTAG	3 cut(s)	284, 300, 582
GlaI	GCGC	3 cut(s)	79, 81, 100
GluI	GCNGC	6 cut(s)	314, 458, 501, 504, 531, 534
HaeIII	GGCC	1 cut(s)	710
HhaI	GCGC	3 cut(s)	80, 82, 101
Hin1II	CATG	4 cut(s)	109, 273, 352, 706
Hin6I	GCGC	3 cut(s)	78, 80, 99
HinP1I	GCGC	3 cut(s)	78, 80, 99
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	2 cut(s)	476, 721
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	2 cut(s)	379, 540
Hpy188III	TCNNGA	2 cut(s)	284, 634
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	213, 392, 464, 722
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4V	TGCA	7 cut(s)	278, 322, 384, 500, 617, 647, 706
HpyF10VI	GCNNNNNNNGC	7 cut(s)	79, 262, 275, 305, 319, 598, 707
HpyF3I	CTNAG	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	109, 273, 352, 706
HspAI	GCGC	3 cut(s)	78, 80, 99
Kzo9I	GATC	1 cut(s)	696
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	2 cut(s)	415, 541
Lsp1109I	GCAGC	4 cut(s)	490, 512, 542, 545
LweI	GCATC	3 cut(s)	309, 634, 666
MaeI	CTAG	3 cut(s)	284, 300, 582
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	1 cut(s)	698
MboI	GATC	1 cut(s)	696
MboII	GAAGA	6 cut(s)	188, 196, 256, 449, 595, 689
MluCI	AATT	3 cut(s)	65, 179, 562
MnlI	CCTC	6 cut(s)	164, 180, 203, 455, 509, 744
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	253, 654
MvaI	CCWGG	2 cut(s)	253, 654
MvnI	CGCG	2 cut(s)	80, 101
MwoI	GCNNNNNNNGC	7 cut(s)	79, 262, 275, 305, 319, 598, 707
NdeII	GATC	1 cut(s)	696
NlaIII	CATG	4 cut(s)	109, 273, 352, 706
NlaIV	GGNNCC	2 cut(s)	191, 403
NmuCI	GTSAC	1 cut(s)	727
PauI	GCGCGC	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	6 cut(s)	315, 459, 502, 505, 532, 535
Ple19I	CGATCG	1 cut(s)	699
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	251, 652
PspGI	CCWGG	2 cut(s)	251, 652
PspN4I	GGNNCC	2 cut(s)	191, 403
PspPI	GGNCC	2 cut(s)	189, 709
PspPPI	RGGWCCY	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	506
PteI	GCGCGC	1 cut(s)	78
PvuI	CGATCG	1 cut(s)	699
PvuII	CAGCTG	1 cut(s)	503
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	6 cut(s)	314, 458, 501, 504, 531, 534
Sau3AI	GATC	1 cut(s)	696
Sau96I	GGNCC	2 cut(s)	189, 709
ScrFI	CCNGG	2 cut(s)	253, 654
SfaNI	GCATC	3 cut(s)	309, 634, 666
SinI	GGWCC	1 cut(s)	189
Sse9I	AATT	3 cut(s)	65, 179, 562
SsiI	CCGC	3 cut(s)	313, 352, 457
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	3 cut(s)	284, 300, 582
StyD4I	CCNGG	2 cut(s)	251, 652
TaaI	ACNGT	1 cut(s)	612
TaqI	TCGA	2 cut(s)	594, 695
TasI	AATT	3 cut(s)	65, 179, 562
TauI	GCSGC	2 cut(s)	316, 460
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	4 cut(s)	500, 503, 530, 533
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	483, 544, 690
TspGWI	ACGGA	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	562
XbaI	TCTAGA	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	3 cut(s)	284, 300, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.