Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013042

Physical Location & Seq

Genomic Coordinates Reverse (-)

4081785 .. 4083801

Gene Structure 2017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGATATATATATCCTCAAATTACTGAAATAACACCGAGATTTTTCAGTGATAAACATACCATATATACAAATTCCCACTTACATCTTTATTCTCACATCTCTCATCATCTGTTACATTCAAATTTGAGTAGTAGAAAGAGAGTGGACAAAGATAAGATGAGGTACCGTTCTTTCTTAAGAAGCCCAAAGAAGGAAGAGCAACAAGTGCCGGACTGTACCCATAATTCTGGTGAAGAATTCTCTGACACTACTAATACAAAATTAGATGATGTTTACACCAATGGAGACAATGATCATGAGGTTGATATCATGGATGATTGGGAGAGAATTTTGGGAATTCAAGAGGAAGAAGATGGAAAATGGCCGAGCGATAACATGTACAGCGGGCACAAGCTCAATTGGGATTTTATGGATTGGGATGAGTTTCCCAATGGAGAAGAAGAAGGGGAGGAGATAGAGCAAAAGGTTTATCAAGGCACTGATAAGTGCTTTTTTGAAGAGGAGAGCTACTACAAAAAAAAAGTAGTAAAAAGTGAGAGTGTAGGGTTTTGGGATGATGATGATGAGAAGAAGGTGCAGCTGAATTTGAATTTGAATTATCAAGAGGTTTTGGATGCTTGGTCGGACCGCGGTTCTCTTTGGGCAGATGATTGTTCACTTTCTTCCATGGCTAGCAATGGCAATTATATGGGCGAGGTGCCGGTAATGGAAGAAGACAAGACAAGAAGAGAGGCAAGTGTTCTAAGGTACAAGGAGAAACGCCAGTCTAGGCTCTTCTCCAAAAAGATAAGGTACCAAGTCCGCAAGCTCAATGCAGATAAAAGACCTAGACTCAAGGGTCGATTTGTGAAGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

288

Amino Acids

34.27

Weight (kDa)

5.57

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	244 - 286	3.9e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07050 AT1G07050
fragaria_vesca	FvH4_3g39550
malus_domestica	MD03G1059900.v1.1 MD11G1063100.v1.1
prunus_persica	Prupe.6G050300_v2.0.a1 Prupe.6G050300_v2.0.a1
pyrus_communis	pycom11g05280
rosa_chinensis	RchiOBHm_Chr5g0071321
rosa_laevigata	RLG00000036202
rosa_multiflora	Rmu_sc0006990.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009810
rosa_rugosa	Rorug05G0411300
rosa_samantha	Rh5AG467700 Rh5BG486200 Rh5CG510600 Rh5DG497400
rosa_wichuraiana	Rw5G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	840
Acc65I	GGTACC	2 cut(s)	165, 795
AccB1I	GGYRCC	3 cut(s)	165, 700, 795
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	387, 631, 633, 805
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	7 cut(s)	73, 124, 239, 330, 339, 586, 592
AfaI	GTAC	5 cut(s)	167, 220, 383, 752, 797
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflII	CTTAAG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	5 cut(s)	123, 344, 500, 592, 598
AluBI	AGCT	4 cut(s)	397, 510, 583, 811
AluI	AGCT	4 cut(s)	397, 510, 583, 811
Alw26I	GTCTC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	580
ApoI	RAATTY	7 cut(s)	73, 124, 239, 330, 339, 586, 592
Asp718I	GGTACC	2 cut(s)	165, 795
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	674
AvaII	GGWCC	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	3 cut(s)	165, 700, 795
BbsI	GAAGAC	1 cut(s)	723
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	1 cut(s)	350
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	3 cut(s)	675, 771, 831
BfrI	CTTAAG	1 cut(s)	178
BisI	GCNGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	582
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	628
BmiI	GGNNCC	3 cut(s)	167, 702, 797
BmsI	GCATC	1 cut(s)	607
BmtI	GCTAGC	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	821
BsaJI	CCNNGG	2 cut(s)	631, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	1 cut(s)	766
Bse3DI	GCAATG	1 cut(s)	685
BseDI	CCNNGG	2 cut(s)	631, 669
BseGI	GGATG	4 cut(s)	322, 427, 562, 622
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	685
BseNI	ACTGG	1 cut(s)	766
BseRI	GAGGAG	2 cut(s)	467, 518
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	599
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	3 cut(s)	165, 700, 795
BsiSI	CCGG	2 cut(s)	212, 704
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	295
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	4 cut(s)	387, 631, 633, 805
BspANI	GGCC	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	167, 702, 797
BspOI	GCTAGC	1 cut(s)	678
BspQI	GCTCTTC	2 cut(s)	192, 782
BspT107I	GGYRCC	3 cut(s)	165, 700, 795
BspTI	CTTAAG	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	685
BsrFI	RCCGGY	1 cut(s)	703
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	766
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	2 cut(s)	631, 669
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	669
Bst4CI	ACNGT	2 cut(s)	170, 218
Bst6I	CTCTTC	5 cut(s)	192, 495, 724, 782, 848
BstAFI	CTTAAG	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	389, 676, 809
BstDEI	CTNAG	1 cut(s)	746
BstDSI	CCRYGG	2 cut(s)	631, 669
BstF5I	GGATG	4 cut(s)	322, 427, 562, 622
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	723
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	2 cut(s)	631, 669
BtsCI	GGATG	4 cut(s)	322, 427, 562, 622
BtsIMutI	CAGTG	2 cut(s)	55, 480
Cac8I	GCNNGC	3 cut(s)	389, 676, 809
CciI	TCATGA	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	628
Cfr42I	CCGCGG	1 cut(s)	634
CpoI	CGGWCCG	1 cut(s)	628
Csp6I	GTAC	5 cut(s)	166, 219, 382, 751, 796
CspI	CGGWCCG	1 cut(s)	628
CviAII	CATG	4 cut(s)	299, 313, 379, 670
CviJI	RGCY	8 cut(s)	186, 367, 397, 510, 583, 674, 775, 811
CviKI_1	RGCY	8 cut(s)	186, 367, 397, 510, 583, 674, 775, 811
CviQI	GTAC	5 cut(s)	166, 219, 382, 751, 796
DdeI	CTNAG	1 cut(s)	746
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	840
DseDI	GACNNNNNNGTC	1 cut(s)	840
EaeI	YGGCCR	1 cut(s)	365
Eam1104I	CTCTTC	5 cut(s)	192, 495, 724, 782, 848
EarI	CTCTTC	5 cut(s)	192, 495, 724, 782, 848
Eco130I	CCWWGG	1 cut(s)	669
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	628
EcoRI	GAATTC	2 cut(s)	239, 339
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	669
FaeI	CATG	4 cut(s)	302, 316, 382, 673
FatI	CATG	4 cut(s)	298, 312, 378, 669
FauI	CCCGC	1 cut(s)	380
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	581
FokI	GGATG	4 cut(s)	329, 434, 569, 629
Fsp4HI	GCNGC	1 cut(s)	581
FspBI	CTAG	3 cut(s)	675, 771, 831
GluI	GCNGC	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	2 cut(s)	212, 704
Hin1II	CATG	4 cut(s)	302, 316, 382, 673
HinfI	GANTC	1 cut(s)	834
HpaII	CCGG	2 cut(s)	212, 704
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	148, 277, 659
Hpy188I	TCNGA	2 cut(s)	247, 628
Hpy188III	TCNNGA	3 cut(s)	299, 344, 605
Hpy8I	GTNNAC	3 cut(s)	148, 277, 659
HpyAV	CCTTC	3 cut(s)	187, 440, 568
HpyCH4III	ACNGT	2 cut(s)	170, 218
HpyCH4V	TGCA	2 cut(s)	580, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	746
Hsp92II	CATG	4 cut(s)	302, 316, 382, 673
KpnI	GGTACC	2 cut(s)	169, 799
Ksp22I	TGATCA	1 cut(s)	295
KspI	CCGCGG	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	295
LguI	GCTCTTC	2 cut(s)	192, 782
LpnPI	CCDG	4 cut(s)	216, 225, 717, 779
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	3 cut(s)	675, 771, 831
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	828
MmeI	TCCRAC	1 cut(s)	606
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	3 cut(s)	387, 583, 633
MspCI	CTTAAG	1 cut(s)	178
MspI	CCGG	2 cut(s)	212, 704
MunI	CAATTG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	208
NcoI	CCATGG	1 cut(s)	669
NdeII	GATC	1 cut(s)	295
NheI	GCTAGC	1 cut(s)	674
NlaIII	CATG	4 cut(s)	302, 316, 382, 673
NlaIV	GGNNCC	3 cut(s)	167, 702, 797
NmeAIII	GCCGAG	1 cut(s)	393
NspI	RCATGY	1 cut(s)	382
PagI	TCATGA	1 cut(s)	298
PciI	ACATGT	1 cut(s)	378
PciSI	GCTCTTC	2 cut(s)	192, 782
PkrI	GCNGC	1 cut(s)	582
PleI	GAGTC	1 cut(s)	828
PpsI	GAGTC	1 cut(s)	828
PscI	ACATGT	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	167, 702, 797
PspPI	GGNCC	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	5 cut(s)	167, 220, 383, 752, 797
RsaNI	GTAC	5 cut(s)	166, 219, 382, 751, 796
Rsr2I	CGGWCCG	1 cut(s)	628
RsrII	CGGWCCG	1 cut(s)	628
SacII	CCGCGG	1 cut(s)	634
SapI	GCTCTTC	2 cut(s)	192, 782
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	581
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	628
SchI	GAGTC	1 cut(s)	828
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	607
Sfr303I	CCGCGG	1 cut(s)	634
SgrBI	CCGCGG	1 cut(s)	634
SinI	GGWCC	1 cut(s)	628
SmlI	CTYRAG	2 cut(s)	178, 836
SmoI	CTYRAG	2 cut(s)	178, 836
SsiI	CCGC	4 cut(s)	387, 631, 633, 805
SspMI	CTAG	3 cut(s)	675, 771, 831
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	2 cut(s)	170, 218
TaqI	TCGA	1 cut(s)	844
TatI	WGTACW	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	2 cut(s)	55, 487
TseI	GCWGC	1 cut(s)	580
TspRI	CASTG	2 cut(s)	55, 487
Vha464I	CTTAAG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	7 cut(s)	73, 124, 239, 330, 339, 586, 592
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	3 cut(s)	675, 771, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.