Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008422

Physical Location & Seq

Genomic Coordinates Forward (+)

4871950 .. 4873641

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAACCCGCTAACCCTAGTGAAACGCATTCAGAACATCAATTCCAGAGAAGCCCAATTAGGGATTTCAGAGGAGGCTTCGTGGCACGCCAAGTACAAAGACTCCGCCTACGTCTACGTCGGTGGCGTTCCCTTCGATCTCACCGAAGGCGATCTCCTCGCCGTTTTCGCACAATACGGAGAGATCGTGGATGTGAATCTTGTTCGCGATAAGGCGACTGGGAAATCCAAGGGGTTTGCGTTTGTGGCGTACGAGGACCAGAGGAGCACTATTCTTGCTGTGGATAATTTGAACGGAGCTCAAATTTTGGGGCGGACAATTAGGGTTGATCATGTGACTAAGTACAAGAAGAAGGAGGAGGAAGATGAAGAGGAGGCGCAGCGGAAGAGGGAGGAGCGGGGTGTTTGCCGGGCTTTCCAGAAAGGCGAATGCACTCGTGGAGATTCGTGCAAGTTTTCGCATAATGAGCAAAGAGCTGCAAACACAGGTTGGGGTGAAAAAGACCCAAAATGGGGGCGTGACAGTTATGAGGGCCCAAAAAGGGGTGATAAAAGATCTAGCTTCATTCCGCCAAATCGTGTTCCAGGGCCAAAAGTTCAGGAAGAGTTCAGATCAGGGGATAGAGATTTGGACTACAGAGGAAAGGGCAACGGGAGGGACTTCGAAAGTCACCCCAAGCGAAGTGATGGGAGGGAGCAAAAGAGACTGGGTAGACAGGGAGGTGATGATGAAAAGTTTAAACCTAGATCAAGAGATCATGATAGGGAGGAAGAAAATAGATCAAGAAGACGGAGTGTGGATGATGAATCGGGGCCCAATTCAAGAGAACATTATGGTAGGAGAGAAGAACAGAGATCGAGAAGGCACAATGATGATGAGTTTCAGCCAAAGTCAAGAGAAGATTATGATAGAAAGAAAGATAAAAGACCCCGAAGGTGTGGTGATGATGAGGAACTTGAGCCAAAGCTGAATTCTAGAGAAGATCATGATAGGAGGGGAGATGATAGAAGGGAAAATAAGAAACTGAGAAGGCATAGTGATGATGGTGAATTTGAGCTCAAATCTAAAGAAGATCGTGGTAGGAGGGAAGATGATAGTAGGGAAGATAAGGAACTGAGAAGGCATGCTGGTGATGCTGATTTTGATCCAAAATCTAGAGACAATCATGATAGGATGGATGAAAAGAGATTGAGAAGGCACAGTGGTTATGAAAATCGTCCGAAGTCCAGAGAAGATTATGATAGGAGGGAAGAACAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070274 GO:0070727 GO:0071011 GO:0071013 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

421

Amino Acids

49.58

Weight (kDa)

8.61

Isoelectric Point (pI)

68.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	35 - 96	2.7e-06	RNA recognition motif
RRM_1	PF00076	38 - 108	5.2e-22	RNA recognition motif
zf-CCCH	PF00642	134 - 155	4.6e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	135 - 155	3.3e-07	CCCH-type zinc finger
zf_CCCH_4	PF18345	136 - 154	3.1e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47120 AT3G47120 AT5G58790
fragaria_vesca	FvH4_3g38440
malus_domestica	MD03G1072000.v1.1 MD11G1076000.v1.1
prunus_persica	Prupe.6G058600_v2.0.a1 Prupe.6G058600_v2.0.a1
pyrus_communis	pycom03g05820 pycom11g06370
rosa_chinensis	RchiOBHm_Chr5g0069091
rosa_laevigata	RLG00000036037
rosa_multiflora	Rmu_sc0000853.1_g000035 Rmu_sc0000936.1_g000010
rosa_roxburghii	Rroxscaffold_1G00011660
rosa_rugosa	Rorug05G0396200 Rorug05G0396200
rosa_samantha	Rh5AG453000 Rh5BG472000 Rh5CG494400 Rh5DG484500
rosa_wichuraiana	Rw0G006060 Rw5G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	397
AccI	GTMKAC	2 cut(s)	114, 712
AccII	CGCG	1 cut(s)	207
AciI	CCGC	6 cut(s)	8, 105, 313, 382, 397, 569
AclWI	GGATC	1 cut(s)	1139
AcsI	RAATTY	3 cut(s)	303, 970, 1049
AfaI	GTAC	3 cut(s)	95, 251, 344
AfiI	CCNNNNNNNGG	5 cut(s)	60, 511, 512, 541, 542
AgsI	TTSAA	2 cut(s)	292, 822
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	955, 987
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	5 cut(s)	299, 476, 561, 967, 1057
AluI	AGCT	5 cut(s)	299, 476, 561, 967, 1057
Alw21I	GWGCWC	3 cut(s)	269, 301, 1059
Alw26I	GTCTC	2 cut(s)	697, 1152
AlwI	GGATC	1 cut(s)	1139
AoxI	GGCC	3 cut(s)	532, 587, 812
ApaI	GGGCCC	2 cut(s)	536, 816
ApeKI	GCWGC	2 cut(s)	379, 476
ApoI	RAATTY	3 cut(s)	303, 970, 1049
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	6 cut(s)	256, 532, 533, 587, 812, 813
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	8 cut(s)	133, 506, 557, 662, 734, 953, 1058, 1142
AsuII	TTCGAA	1 cut(s)	663
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	2 cut(s)	536, 816
BanII	GRGCYC	4 cut(s)	301, 536, 816, 1059
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	793
Bbv12I	GWGCWC	3 cut(s)	269, 301, 1059
BbvI	GCAGC	2 cut(s)	391, 463
BccI	CCATC	3 cut(s)	680, 1037, 1168
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	585
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	2 cut(s)	697, 1152
BfaI	CTAG	5 cut(s)	17, 558, 744, 975, 1155
BfmI	CTRYAG	1 cut(s)	634
BglII	AGATCT	1 cut(s)	554
BisI	GCNGC	2 cut(s)	380, 477
BlsI	GCNGC	2 cut(s)	381, 478
Bme1390I	CCNGG	2 cut(s)	410, 585
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	6 cut(s)	256, 532, 533, 587, 812, 813
BmiI	GGNNCC	3 cut(s)	534, 813, 814
BmrFI	CCNGG	2 cut(s)	410, 585
BmrI	ACTGGG	2 cut(s)	228, 716
BmsI	GCATC	1 cut(s)	1123
BmuI	ACTGGG	2 cut(s)	228, 716
BpiI	GAAGAC	1 cut(s)	793
Bpu14I	TTCGAA	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	977
BpuMI	CCSGG	1 cut(s)	410
BsaBI	GATNNNNATC	2 cut(s)	195, 1143
BsaJI	CCNNGG	2 cut(s)	228, 584
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 86, 95, 116, 171, 201
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 511, 512, 541, 542
Bse1I	ACTGG	2 cut(s)	223, 711
Bse8I	GATNNNNATC	2 cut(s)	195, 1143
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	228, 584
BseGI	GGATG	4 cut(s)	196, 805, 1179, 1183
BseJI	GATNNNNATC	2 cut(s)	195, 1143
BseLI	CCNNNNNNNGG	5 cut(s)	60, 511, 512, 541, 542
BseMII	CTCAG	2 cut(s)	1016, 1106
BseNI	ACTGG	2 cut(s)	223, 711
BseRI	GAGGAG	6 cut(s)	86, 146, 277, 371, 386, 407
BseSI	GKGCMC	2 cut(s)	536, 816
BseXI	GCAGC	2 cut(s)	391, 463
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	534, 589, 814
BsiHKAI	GWGCWC	3 cut(s)	269, 301, 1059
BsiSI	CCGG	1 cut(s)	409
BsiWI	CGTACG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	5 cut(s)	60, 511, 512, 541, 542
BsmAI	GTCTC	2 cut(s)	697, 1152
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	2 cut(s)	27, 434
BsnI	GGCC	3 cut(s)	534, 589, 814
Bsp119I	TTCGAA	1 cut(s)	663
Bsp120I	GGGCCC	2 cut(s)	532, 812
Bsp1286I	GDGCHC	5 cut(s)	269, 301, 536, 816, 1059
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	6 cut(s)	8, 105, 313, 382, 397, 569
BspANI	GGCC	3 cut(s)	534, 589, 814
BspCNI	CTCAG	2 cut(s)	1017, 1107
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	3 cut(s)	757, 985, 1165
BspLI	GGNNCC	3 cut(s)	534, 813, 814
BspPI	GGATC	1 cut(s)	1139
BspT104I	TTCGAA	1 cut(s)	663
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	223, 711
BssECI	CCNNGG	2 cut(s)	228, 584
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	524, 1202
Bst6I	CTCTTC	3 cut(s)	363, 380, 597
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	87, 1125
BstDEI	CTNAG	3 cut(s)	339, 1025, 1115
BstF5I	GGATG	4 cut(s)	196, 805, 1179, 1183
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	697, 1152
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 245, 466, 1133
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	1127
BstSCI	CCNGG	2 cut(s)	408, 583
BstSFI	CTRYAG	1 cut(s)	634
BstSLI	GKGCMC	2 cut(s)	536, 816
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	391, 463
BstV2I	GAAGAC	1 cut(s)	793
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	534, 589, 814
BtsCI	GGATG	4 cut(s)	196, 805, 1179, 1183
BtsIMutI	CAGTG	1 cut(s)	1207
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	87, 1125
CciI	TCATGA	3 cut(s)	757, 985, 1165
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	6 cut(s)	256, 532, 533, 587, 812, 813
Csp6I	GTAC	3 cut(s)	94, 250, 343
CviAII	CATG	5 cut(s)	332, 758, 986, 1124, 1166
CviQI	GTAC	3 cut(s)	94, 250, 343
DdeI	CTNAG	3 cut(s)	339, 1025, 1115
DraI	TTTAAA	1 cut(s)	739
Eam1104I	CTCTTC	3 cut(s)	363, 380, 597
EarI	CTCTTC	3 cut(s)	363, 380, 597
EciI	GGCGGA	3 cut(s)	94, 328, 558
Ecl136II	GAGCTC	2 cut(s)	299, 1057
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	4 cut(s)	301, 536, 816, 1059
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	2 cut(s)	299, 1057
EcoICRI	GAGCTC	2 cut(s)	299, 1057
EcoO109I	RGGNCCY	2 cut(s)	532, 812
EcoRI	GAATTC	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	4 cut(s)	301, 536, 816, 1059
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	5 cut(s)	335, 761, 989, 1127, 1169
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	5 cut(s)	331, 757, 985, 1123, 1165
FauI	CCCGC	2 cut(s)	15, 390
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	2 cut(s)	114, 712
Fnu4HI	GCNGC	2 cut(s)	380, 477
FokI	GGATG	4 cut(s)	203, 812, 1186, 1190
FriOI	GRGCYC	4 cut(s)	301, 536, 816, 1059
Fsp4HI	GCNGC	2 cut(s)	380, 477
FspBI	CTAG	5 cut(s)	17, 558, 744, 975, 1155
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	2 cut(s)	380, 477
HaeIII	GGCC	3 cut(s)	534, 589, 814
HapII	CCGG	1 cut(s)	409
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	5 cut(s)	335, 761, 989, 1127, 1169
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	4 cut(s)	101, 196, 443, 806
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	8 cut(s)	133, 506, 557, 662, 734, 953, 1058, 1142
Hpy166II	GTNNAC	2 cut(s)	115, 713
Hpy188I	TCNGA	4 cut(s)	33, 70, 611, 1221
Hpy8I	GTNNAC	2 cut(s)	115, 713
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	9 cut(s)	140, 142, 346, 855, 927, 1002, 1023, 1113, 1188
HpyCH4III	ACNGT	2 cut(s)	524, 1202
HpyCH4IV	ACGT	2 cut(s)	111, 117
HpyCH4V	TGCA	3 cut(s)	432, 450, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 245, 466, 1133
HpyF3I	CTNAG	3 cut(s)	339, 1025, 1115
HpySE526I	ACGT	2 cut(s)	111, 117
Hsp92II	CATG	5 cut(s)	335, 761, 989, 1127, 1169
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	328
LmnI	GCTCC	4 cut(s)	264, 296, 394, 694
Lsp1109I	GCAGC	2 cut(s)	391, 463
LweI	GCATC	1 cut(s)	1123
MaeI	CTAG	5 cut(s)	17, 558, 744, 975, 1155
MaeII	ACGT	2 cut(s)	111, 117
MaeIII	GTNAC	3 cut(s)	334, 518, 668
MbiI	CCGCTC	1 cut(s)	397
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	5 cut(s)	269, 301, 536, 816, 1059
MluCI	AATT	8 cut(s)	40, 56, 286, 303, 318, 817, 970, 1049
MlyI	GAGTC	1 cut(s)	95
MseI	TTAA	1 cut(s)	738
MslI	CAYNNNNRTG	3 cut(s)	870, 1038, 1128
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	2 cut(s)	410, 585
MssI	GTTTAAAC	1 cut(s)	739
Mva1269I	GAATGC	2 cut(s)	27, 434
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	167, 245, 466, 1133
NciI	CCSGG	1 cut(s)	410
NlaIII	CATG	5 cut(s)	335, 761, 989, 1127, 1169
NlaIV	GGNNCC	3 cut(s)	534, 813, 814
NmuCI	GTSAC	3 cut(s)	334, 518, 668
NruI	TCGCGA	1 cut(s)	207
NspI	RCATGY	1 cut(s)	1127
NspV	TTCGAA	1 cut(s)	663
PaeI	GCATGC	1 cut(s)	1127
PagI	TCATGA	3 cut(s)	757, 985, 1165
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 141, 183
PctI	GAATGC	2 cut(s)	27, 434
PfeI	GAWTC	3 cut(s)	196, 443, 806
Pfl23II	CGTACG	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	381, 478
PleI	GAGTC	1 cut(s)	95
PmeI	GTTTAAAC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	95
Psp124BI	GAGCTC	2 cut(s)	301, 1059
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspLI	CGTACG	1 cut(s)	249
PspN4I	GGNNCC	3 cut(s)	534, 813, 814
PspOMI	GGGCCC	2 cut(s)	532, 812
PspPI	GGNCC	6 cut(s)	256, 532, 533, 587, 812, 813
PsuI	RGATCY	1 cut(s)	554
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	3 cut(s)	95, 251, 344
RsaNI	GTAC	3 cut(s)	94, 250, 343
RseI	CAYNNNNRTG	3 cut(s)	870, 1038, 1128
SacI	GAGCTC	2 cut(s)	301, 1059
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	2 cut(s)	380, 477
Sau96I	GGNCC	6 cut(s)	256, 532, 533, 587, 812, 813
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	410, 585
SduI	GDGCHC	5 cut(s)	269, 301, 536, 816, 1059
SfaNI	GCATC	1 cut(s)	1123
SfcI	CTRYAG	1 cut(s)	634
SfuI	TTCGAA	1 cut(s)	663
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	3 cut(s)	870, 1038, 1128
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SphI	GCATGC	1 cut(s)	1127
Sse9I	AATT	8 cut(s)	40, 56, 286, 303, 318, 817, 970, 1049
SsiI	CCGC	6 cut(s)	8, 105, 313, 382, 397, 569
SspMI	CTAG	5 cut(s)	17, 558, 744, 975, 1155
SstI	GAGCTC	2 cut(s)	301, 1059
StyD4I	CCNGG	2 cut(s)	408, 583
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	524, 1202
TaiI	ACGT	2 cut(s)	114, 120
TaqI	TCGA	3 cut(s)	135, 663, 857
TasI	AATT	8 cut(s)	40, 56, 286, 303, 318, 817, 970, 1049
TatI	WGTACW	2 cut(s)	93, 342
TfiI	GAWTC	3 cut(s)	196, 443, 806
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	1 cut(s)	1207
TseFI	GTSAC	3 cut(s)	334, 518, 668
TseI	GCWGC	2 cut(s)	379, 476
Tsp45I	GTSAC	3 cut(s)	334, 518, 668
TspDTI	ATGAA	7 cut(s)	17, 381, 553, 744, 819, 1194, 1224
TspGWI	ACGGA	3 cut(s)	192, 309, 805
TspRI	CASTG	1 cut(s)	1207
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	303, 970, 1049
XbaI	TCTAGA	2 cut(s)	974, 1154
XceI	RCATGY	1 cut(s)	1127
XmiI	GTMKAC	2 cut(s)	114, 712
XspI	CTAG	5 cut(s)	17, 558, 744, 975, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.