pycom11g06650

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013422
Physical Location & Seq
Reverse (-)
5132771 .. 5133886
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
ATGGCCAACATATCAACACTCTTCAACAAGTTCCTCTCTCTCCTTCTCCTCCTCCTCCACCTCGGCTGCTTCTCTATCACCGCCACCACCAATCACCAAACAAAGCATCATCACCGCCGTAAACTCCTTAAACCCACCACCCTAAAACCCCAAAAAGCCCTTTCCACCTCCTGGTCCTATCTCAAACGCATCTTCACCTCCAAATCCTGCAAAATCACCTGCACCAACATCATCCAATCCCACCTCTCCACTCCACCCCGCTCCTCCAGCCATTCCATCGTCTCCCTCGTCCTACCCGACCCAGACACCAAATACCCACCTGGGTCATTCCCCGAATCCGGTATCTCGGCCGGTTCCCACCAATTCTTCCCTCTCCGAAACGATATCTTCCCCTGTACCGCCTGCGGCGAAATCTTCCCGAAACCCGAGACTCTCGACCACCACCAGGCAATCCACCACGCCGTTTCAGAGCTCCATGACGGAGACTCGGGCAAAAACATCGTCCAAATCATATTCAAAACCGGTTGGACCGATACGCGAAAAGCCCCCGAAATTCACCGGATCCTGAAGATCCACAACAGCGGTAAAATCCTGTCGAGGTTCGAGGAGTACAGAGAGCTGGTCAAGTCGAAGGCGGCGCGAAACGGCGCTTGCCGGAGGCGGGACGAGCGCTGCATTGCCGACGGCAACGAGCTTCTCCGATTTCACTGCTCCACTTTCGTCTGCGATTTGGGACTCAACGGGAATTCTGGGATTTGTAATCACGAGTACTGCAGTATTTGCGGGATTATTAAATCTGGATTCTCGCCCAAGTTGGACGGAATTTCCACTTTGTCGAGTAGCTCCAGGGCACACGTGGCGATTCCGGAGGATATCGAGGAGGACTTTAAGTTCATGAACGTGAAGCGGGCTATGCTGGTCTGCCGGGTCGTGGCGGGTCGGGTCGGGTGTGACTCGGAGGAGGATATTGATGACGTGGACAAAGAGGGCGGTGGATTCGACTCGGTCGTGGGACGAGGAGGCAGCGGGGTACACTCGAGGGTCGACGAGGAGGAGCTTTTGGTGTATAACCCGAGGGCTGTGCTTCCTTGTTTTGTGATTATATATACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

41.17

Weight (kDa)

8.45

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29660
fragaria_vesca FvH4_3g38290 FvH4_3g38290
malus_domestica MD03G1073300.v1.1 MD11G1079200.v1.1
prunus_persica Prupe.6G060000_v2.0.a1
pyrus_communis pycom03g05930 pycom11g06650
rosa_chinensis RchiOBHm_Chr5g0068821
rosa_laevigata RLG00000036012
rosa_multiflora Rmu_sc0014317.1_g000001
rosa_roxburghii Rroxscaffold_1G00012020
rosa_rugosa Rorug05G0393400
rosa_samantha Rh5AG450800 Rh5BG469300 Rh5CG491500 Rh5DG482600
rosa_wichuraiana Rw5G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 171
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 1044
AccII CGCG 2 cut(s) 538, 640
AccIII TCCGGA 1 cut(s) 865
AclWI GGATC 3 cut(s) 556, 565, 569
AcoI YGGCCR 2 cut(s) 3, 348
AcsI RAATTY 3 cut(s) 552, 745, 822
AcuI CTGAAG 1 cut(s) 587
AcvI CACGTG 1 cut(s) 856
AfaI GTAC 4 cut(s) 397, 611, 770, 1032
AfeI AGCGCT 1 cut(s) 671
AfiI CCNNNNNNNGG 5 cut(s) 171, 338, 445, 661, 931
AflIII ACRYGT 1 cut(s) 853
AgeI ACCGGT 1 cut(s) 521
AgsI TTSAA 2 cut(s) 25, 517
AjiI CACGTC 1 cut(s) 976
AjnI CCWGG 4 cut(s) 170, 319, 444, 845
AloI GAACNNNNNNTCC 2 cut(s) 875, 907
AluBI AGCT 5 cut(s) 472, 619, 694, 843, 1057
AluI AGCT 5 cut(s) 472, 619, 694, 843, 1057
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 3 cut(s) 286, 422, 477
AlwI GGATC 3 cut(s) 556, 565, 569
Ama87I CYCGRG 4 cut(s) 425, 487, 1036, 1072
Aor13HI TCCGGA 1 cut(s) 865
Aor51HI AGCGCT 1 cut(s) 671
AoxI GGCC 2 cut(s) 3, 348
ApeKI GCWGC 3 cut(s) 66, 672, 1023
ApoI RAATTY 3 cut(s) 552, 745, 822
ArsI GACNNNNNNTTYG 2 cut(s) 486, 518
AsiGI ACCGGT 1 cut(s) 521
AspLEI GCGC 3 cut(s) 640, 650, 672
AspS9I GGNCC 2 cut(s) 174, 528
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 6 cut(s) 70, 86, 104, 187, 208, 548
AvaI CYCGRG 4 cut(s) 425, 487, 1036, 1072
AvaII GGWCC 2 cut(s) 174, 528
BaeGI GKGCMC 1 cut(s) 853
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 561
BanII GRGCYC 1 cut(s) 474
BauI CACGAG 1 cut(s) 764
BbrPI CACGTG 1 cut(s) 856
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 53, 659, 1035
BccI CCATC 1 cut(s) 284
BceAI ACGGC 4 cut(s) 102, 446, 661, 700
BcgI CGANNNNNNTGC 6 cut(s) 481, 515, 690, 724, 1063, 1097
BciT130I CCWGG 4 cut(s) 172, 321, 446, 847
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 3 cut(s) 286, 422, 477
BfmI CTRYAG 1 cut(s) 772
BfoI RGCGCY 2 cut(s) 651, 673
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 5 cut(s) 67, 406, 636, 673, 1024
BlsI GCNGC 5 cut(s) 68, 407, 637, 674, 1025
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 5 cut(s) 172, 321, 446, 847, 926
Bme18I GGWCC 2 cut(s) 174, 528
BmeT110I CYCGRG 4 cut(s) 425, 487, 1036, 1072
BmgBI CACGTC 1 cut(s) 976
BmgT120I GGNCC 2 cut(s) 174, 528
BmiI GGNNCC 2 cut(s) 355, 563
BmrFI CCNGG 5 cut(s) 172, 321, 446, 847, 926
BmsI GCATC 2 cut(s) 115, 198
BpmI CTGGAG 2 cut(s) 250, 829
BpuMI CCSGG 1 cut(s) 926
BsaAI YACGTR 1 cut(s) 856
BsaJI CCNNGG 4 cut(s) 61, 320, 846, 1073
BsaWI WCCGGW 4 cut(s) 338, 521, 558, 865
Bsc4I CCNNNNNNNGG 5 cut(s) 171, 338, 445, 661, 931
Bse118I RCCGGY 2 cut(s) 350, 521
Bse3DI GCAATG 1 cut(s) 675
BseAI TCCGGA 1 cut(s) 865
BseBI CCWGG 4 cut(s) 172, 321, 446, 847
BseDI CCNNGG 4 cut(s) 61, 320, 846, 1073
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 5 cut(s) 171, 338, 445, 661, 931
BseMI GCAATG 1 cut(s) 675
BseSI GKGCMC 1 cut(s) 853
BseX3I CGGCCG 1 cut(s) 348
BseXI GCAGC 3 cut(s) 53, 659, 1035
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 2 cut(s) 538, 640
Bsh1285I CGRYCG 2 cut(s) 351, 1008
BshFI GGCC 2 cut(s) 5, 350
BshTI ACCGGT 1 cut(s) 521
BsiEI CGRYCG 2 cut(s) 351, 1008
BsiHKAI GWGCWC 1 cut(s) 474
BsiHKCI CYCGRG 4 cut(s) 425, 487, 1036, 1072
BsiSI CCGG 7 cut(s) 339, 351, 522, 559, 655, 866, 925
BslFI GGGAC 3 cut(s) 677, 747, 1026
BslI CCNNNNNNNGG 5 cut(s) 171, 338, 445, 661, 931
BsmAI GTCTC 3 cut(s) 286, 422, 477
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 3 cut(s) 677, 747, 1026
BsnI GGCC 2 cut(s) 5, 350
BsoBI CYCGRG 4 cut(s) 425, 487, 1036, 1072
Bsp1286I GDGCHC 2 cut(s) 474, 853
Bsp13I TCCGGA 1 cut(s) 865
Bsp143I GATC 2 cut(s) 561, 570
BspANI GGCC 2 cut(s) 5, 350
BspEI TCCGGA 1 cut(s) 865
BspFNI CGCG 2 cut(s) 538, 640
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 2 cut(s) 355, 563
BspMAI CTGCAG 1 cut(s) 776
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 3 cut(s) 556, 565, 569
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 675
BsrFI RCCGGY 2 cut(s) 350, 521
BssAI RCCGGY 2 cut(s) 350, 521
BssECI CCNNGG 4 cut(s) 61, 320, 846, 1073
BssMI GATC 2 cut(s) 561, 570
BssSI CACGAG 1 cut(s) 764
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 4 cut(s) 172, 321, 446, 847
Bst4CI ACNGT 1 cut(s) 1111
Bst6I CTCTTC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 780
BstBAI YACGTR 1 cut(s) 856
BstC8I GCNNGC 3 cut(s) 403, 652, 909
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 2 cut(s) 538, 640
BstH2I RGCGCY 2 cut(s) 651, 673
BstHHI GCGC 3 cut(s) 640, 650, 672
BstKTI GATC 2 cut(s) 564, 573
BstMAI GTCTC 3 cut(s) 286, 422, 477
BstMBI GATC 2 cut(s) 561, 570
BstMCI CGRYCG 2 cut(s) 351, 1008
BstMWI GCNNNNNNNGC 5 cut(s) 267, 667, 780, 857, 913
BstNI CCWGG 4 cut(s) 172, 321, 446, 847
BstSCI CCNGG 5 cut(s) 170, 319, 444, 845, 924
BstSFI CTRYAG 1 cut(s) 772
BstSLI GKGCMC 1 cut(s) 853
BstUI CGCG 2 cut(s) 538, 640
BstV1I GCAGC 3 cut(s) 53, 659, 1035
BstX2I RGATCY 2 cut(s) 561, 570
BstYI RGATCY 2 cut(s) 561, 570
BstZI CGGCCG 1 cut(s) 348
BsuRI GGCC 2 cut(s) 5, 350
BtrI CACGTC 1 cut(s) 976
BtsCI GGATG 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 706
BtsIMutI CAGTG 1 cut(s) 706
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 403, 652, 909
CciI TCATGA 1 cut(s) 894
CfoI GCGC 3 cut(s) 640, 650, 672
Cfr10I RCCGGY 2 cut(s) 350, 521
Cfr13I GGNCC 2 cut(s) 174, 528
Csp6I GTAC 4 cut(s) 396, 610, 769, 1031
CspAI ACCGGT 1 cut(s) 521
CviAII CATG 2 cut(s) 476, 895
CviQI GTAC 4 cut(s) 396, 610, 769, 1031
DpnI GATC 2 cut(s) 563, 572
DpnII GATC 2 cut(s) 561, 570
EaeI YGGCCR 2 cut(s) 3, 348
EagI CGGCCG 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 472
EclXI CGGCCG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 474
Eco32I GATATC 2 cut(s) 385, 874
Eco47I GGWCC 2 cut(s) 174, 528
Eco47III AGCGCT 1 cut(s) 671
Eco52I CGGCCG 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 587
Eco72I CACGTG 1 cut(s) 856
Eco88I CYCGRG 4 cut(s) 425, 487, 1036, 1072
EcoICRI GAGCTC 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 4 cut(s) 170, 319, 444, 845
EcoRV GATATC 2 cut(s) 385, 874
EcoT38I GRGCYC 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 2 cut(s) 479, 898
FaiI YATR 9 cut(s) 11, 477, 512, 896, 914, 1068, 1103, 1105, 1107
FaqI GGGAC 3 cut(s) 677, 747, 1026
FatI CATG 2 cut(s) 475, 894
FauI CCCGC 6 cut(s) 266, 654, 776, 900, 928, 1019
FblI GTMKAC 1 cut(s) 1044
Fnu4HI GCNGC 5 cut(s) 67, 406, 636, 673, 1024
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 5 cut(s) 67, 406, 636, 673, 1024
GlaI GCGC 3 cut(s) 639, 649, 671
GluI GCNGC 5 cut(s) 67, 406, 636, 673, 1024
GsuI CTGGAG 2 cut(s) 250, 829
HaeII RGCGCY 2 cut(s) 651, 673
HaeIII GGCC 2 cut(s) 5, 350
HapII CCGG 7 cut(s) 339, 351, 522, 559, 655, 866, 925
HhaI GCGC 3 cut(s) 640, 650, 672
Hin1II CATG 2 cut(s) 479, 898
Hin6I GCGC 3 cut(s) 638, 648, 670
HinP1I GCGC 3 cut(s) 638, 648, 670
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HinfI GANTC 9 cut(s) 335, 430, 485, 735, 801, 862, 953, 996, 1001
HpaII CCGG 7 cut(s) 339, 351, 522, 559, 655, 866, 925
HphI GGTGA 6 cut(s) 70, 86, 104, 187, 208, 548
Hpy166II GTNNAC 4 cut(s) 122, 979, 1033, 1045
Hpy188I TCNGA 4 cut(s) 377, 469, 701, 958
Hpy188III TCNNGA 7 cut(s) 418, 434, 565, 764, 798, 866, 895
Hpy8I GTNNAC 4 cut(s) 122, 979, 1033, 1045
Hpy99I CGWCG 2 cut(s) 686, 1049
HpyAV CCTTC 2 cut(s) 53, 625
HpyCH4III ACNGT 1 cut(s) 1111
HpyCH4IV ACGT 3 cut(s) 855, 900, 975
HpyCH4V TGCA 4 cut(s) 210, 222, 675, 774
HpyF10VI GCNNNNNNNGC 5 cut(s) 267, 667, 780, 857, 913
HpySE526I ACGT 3 cut(s) 855, 900, 975
Hsp92II CATG 2 cut(s) 479, 898
HspAI GCGC 3 cut(s) 638, 648, 670
Kpn2I TCCGGA 1 cut(s) 865
Kzo9I GATC 2 cut(s) 561, 570
LmnI GCTCC 5 cut(s) 266, 477, 716, 848, 1054
Lsp1109I GCAGC 3 cut(s) 53, 659, 1035
LweI GCATC 2 cut(s) 115, 198
MaeII ACGT 3 cut(s) 855, 900, 975
MaeIII GTNAC 1 cut(s) 950
MalI GATC 2 cut(s) 563, 572
MbiI CCGCTC 1 cut(s) 261
MboI GATC 2 cut(s) 561, 570
MboII GAAGA 6 cut(s) 13, 184, 358, 379, 406, 580
MflI RGATCY 2 cut(s) 561, 570
MhlI GDGCHC 2 cut(s) 474, 853
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 362, 552, 745, 822
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 5 cut(s) 424, 479, 729, 947, 995
MmeI TCCRAC 2 cut(s) 506, 795
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 865
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 129, 792, 888
MslI CAYNNNNRTG 1 cut(s) 899
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 582, 1026
MspI CCGG 7 cut(s) 339, 351, 522, 559, 655, 866, 925
MspR9I CCNGG 5 cut(s) 172, 321, 446, 847, 926
MvaI CCWGG 4 cut(s) 172, 321, 446, 847
MvnI CGCG 2 cut(s) 538, 640
MwoI GCNNNNNNNGC 5 cut(s) 267, 667, 780, 857, 913
NciI CCSGG 1 cut(s) 926
NdeII GATC 2 cut(s) 561, 570
NlaIII CATG 2 cut(s) 479, 898
NlaIV GGNNCC 2 cut(s) 355, 563
NmeAIII GCCGAG 2 cut(s) 42, 326
NmuCI GTSAC 1 cut(s) 950
PaeR7I CTCGAG 1 cut(s) 1036
PagI TCATGA 1 cut(s) 894
PaqCI CACCTGC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 3 cut(s) 285, 294, 1005
PfeI GAWTC 4 cut(s) 335, 801, 862, 996
PflFI GACNNNGTC 1 cut(s) 1004
PflMI CCANNNNNTGG 1 cut(s) 171
PinAI ACCGGT 1 cut(s) 521
PkrI GCNGC 5 cut(s) 68, 407, 637, 674, 1025
PleI GAGTC 5 cut(s) 424, 479, 729, 947, 995
PmaCI CACGTG 1 cut(s) 856
PmlI CACGTG 1 cut(s) 856
PpsI GAGTC 5 cut(s) 424, 479, 729, 947, 995
Ppu21I YACGTR 1 cut(s) 856
Psp124BI GAGCTC 1 cut(s) 474
Psp6I CCWGG 4 cut(s) 170, 319, 444, 845
PspCI CACGTG 1 cut(s) 856
PspGI CCWGG 4 cut(s) 170, 319, 444, 845
PspN4I GGNNCC 2 cut(s) 355, 563
PspPI GGNCC 2 cut(s) 174, 528
PspXI VCTCGAGB 1 cut(s) 1036
PstI CTGCAG 1 cut(s) 776
PsuI RGATCY 2 cut(s) 561, 570
PsyI GACNNNGTC 1 cut(s) 1004
RsaI GTAC 4 cut(s) 397, 611, 770, 1032
RsaNI GTAC 4 cut(s) 396, 610, 769, 1031
RseI CAYNNNNRTG 1 cut(s) 899
SacI GAGCTC 1 cut(s) 474
SalI GTCGAC 1 cut(s) 1043
SaqAI TTAA 3 cut(s) 129, 792, 888
SatI GCNGC 5 cut(s) 67, 406, 636, 673, 1024
Sau3AI GATC 2 cut(s) 561, 570
Sau96I GGNCC 2 cut(s) 174, 528
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 5 cut(s) 424, 479, 729, 947, 995
ScrFI CCNGG 5 cut(s) 172, 321, 446, 847, 926
SduI GDGCHC 2 cut(s) 474, 853
SfaNI GCATC 2 cut(s) 115, 198
SfcI CTRYAG 1 cut(s) 772
Sfr274I CTCGAG 1 cut(s) 1036
SinI GGWCC 2 cut(s) 174, 528
SlaI CTCGAG 1 cut(s) 1036
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 1 cut(s) 1036
SmoI CTYRAG 1 cut(s) 1036
Sse9I AATT 4 cut(s) 362, 552, 745, 822
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 5 cut(s) 170, 319, 444, 845, 924
TaaI ACNGT 1 cut(s) 1111
TaiI ACGT 3 cut(s) 858, 903, 978
TaqI TCGA 9 cut(s) 435, 596, 603, 629, 836, 876, 999, 1037, 1044
TaqII GACCGA 2 cut(s) 545, 994
TasI AATT 4 cut(s) 362, 552, 745, 822
TatI WGTACW 2 cut(s) 609, 768
TauI GCSGC 2 cut(s) 408, 638
TfiI GAWTC 4 cut(s) 335, 801, 862, 996
Tru1I TTAA 3 cut(s) 129, 792, 888
Tru9I TTAA 3 cut(s) 129, 792, 888
TscAI CASTG 1 cut(s) 713
TseFI GTSAC 1 cut(s) 950
TseI GCWGC 3 cut(s) 66, 672, 1023
Tsp45I GTSAC 1 cut(s) 950
TspDTI ATGAA 2 cut(s) 883, 911
TspGWI ACGGA 2 cut(s) 495, 834
TspRI CASTG 1 cut(s) 713
Tth111I GACNNNGTC 1 cut(s) 1004
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 2 cut(s) 174, 528
XapI RAATTY 3 cut(s) 552, 745, 822
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XhoI CTCGAG 1 cut(s) 1036
XmiI GTMKAC 1 cut(s) 1044
ZrmI AGTACT 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.