pycom11g06890
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013839
Physical Location & Seq
Reverse (-)
5248644 .. 5249815
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
ATGAAGTTTGAGATGGAGATTCTGTCCCCTTCGTCCTACTCTTCGACTTCGAATTGGCTTGTCGAAGAGAGCAAGAGCGCGAGATGGACTTCGGCGGAGAACAAAATGTTCGAAAACGCCCTGGCGGTGTACGACAGGGACACGCCTGACCGGTGGCACCAGGTGGCCGCGATGATACCGGGGAAGACGGTGAGAGACGTGAAGAAGCAGTACGAGGAATTGGAAGCTGATGTTGGCCAGATAGAAGCAGGGTTAGTTCCGATTCCGGGATACAGCACCTCTCCATTCACATTGGAGTGGGTGAACAGACATGGCGGCTATGAGGGGTTCAAACAGCAGGCTTGCGGGATTGGTGGCAAGAGATCTTCGCTGAATCGCCCTTCAGATCACGAAAGAAAGAAGGGGGTTCCGTGGACTGAGGAAGAACACAAGCTGTTCCTAATGGGGCTGAAGAAGTATGGCAAGGGGGACTGGAGGAACATCTCGCGGAATTTTGTGGTGACACGAACACCTACTCAGGTGGCTAGTCACGCACAGAAATACTTCATCAGGCAGATTTCCGGGGGCAAGGATAAGCGAAGAGCCAGCATCCATGACATAACAACTGTCAATCTCAACGACGTGAGAACTCCGTCTCCAGACAACAAAAGTCCTCTCTCTCCAGAGCTGCCTCCGCATCCGAATTCTGCTGCCACCGCAAGGGTTCCATTTCAGTGGCATCCGCCGCAAGGCGGTGGAGTAAACATGGGTTTTAATCAAGGGCATGGAAATATGTTCATGTCTTCCCATCCTTATGGCATTAGTTCGTATGGACTAAAAATGCAGGGGCAGGACCTGCTCAAAGGTGCTGCTAATAATTCGTACTATGGACCGCAAAATTTGAGTTTCCAGATGCAATCCTCGCAGCACTACCCGCACGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

308

Amino Acids

34.44

Weight (kDa)

9.3

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 136 - 182 4.1e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 843
AccB1I GGYRCC 1 cut(s) 156
AccII CGCG 3 cut(s) 80, 170, 487
AcoI YGGCCR 2 cut(s) 165, 235
AcsI RAATTY 3 cut(s) 490, 682, 877
AcuI CTGAAG 2 cut(s) 366, 470
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 3 cut(s) 131, 212, 863
AfiI CCNNNNNNNGG 4 cut(s) 266, 699, 728, 731
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 2 cut(s) 199, 622
AjnI CCWGG 2 cut(s) 120, 159
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AloI GAACNNNNNNTCC 2 cut(s) 619, 651
AluBI AGCT 3 cut(s) 227, 433, 667
AluI AGCT 3 cut(s) 227, 433, 667
Alw26I GTCTC 2 cut(s) 189, 639
AlwNI CAGNNNCTG 1 cut(s) 835
AoxI GGCC 2 cut(s) 165, 235
ApeKI GCWGC 4 cut(s) 667, 689, 848, 904
ApoI RAATTY 3 cut(s) 490, 682, 877
AsiGI ACCGGT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 832, 869
AsuC2I CCSGG 3 cut(s) 180, 267, 562
AsuHPI GGTGA 3 cut(s) 202, 313, 511
AsuII TTCGAA 2 cut(s) 50, 111
AvaII GGWCC 2 cut(s) 832, 869
BalI TGGCCA 1 cut(s) 237
BanI GGYRCC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbsI GAAGAC 2 cut(s) 191, 774
BbvI GCAGC 4 cut(s) 654, 676, 835, 916
BccI CCATC 3 cut(s) 7, 78, 795
BciT130I CCWGG 2 cut(s) 122, 161
BciVI GTATCC 1 cut(s) 263
BcnI CCSGG 3 cut(s) 180, 267, 562
BcoDI GTCTC 2 cut(s) 189, 639
BfaI CTAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 843
BfuI GTATCC 1 cut(s) 263
BglII AGATCT 1 cut(s) 362
BisI GCNGC 7 cut(s) 168, 316, 668, 690, 725, 849, 905
BlsI GCNGC 7 cut(s) 169, 317, 669, 691, 726, 850, 906
Bme1390I CCNGG 5 cut(s) 122, 161, 180, 267, 562
Bme18I GGWCC 2 cut(s) 832, 869
BmgBI CACGTC 2 cut(s) 199, 622
BmgT120I GGNCC 2 cut(s) 832, 869
BmiI GGNNCC 3 cut(s) 158, 408, 705
BmrFI CCNGG 5 cut(s) 122, 161, 180, 267, 562
BmsI GCATC 4 cut(s) 597, 685, 727, 882
BpiI GAAGAC 2 cut(s) 191, 774
BpmI CTGGAG 3 cut(s) 493, 621, 645
Bpu14I TTCGAA 2 cut(s) 50, 111
BpuMI CCSGG 3 cut(s) 180, 267, 562
BsaJI CCNNGG 4 cut(s) 120, 179, 410, 561
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 619, 649
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 699, 728, 731
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 476
BseBI CCWGG 2 cut(s) 122, 161
BseDI CCNNGG 4 cut(s) 120, 179, 410, 561
BseGI GGATG 4 cut(s) 588, 676, 718, 787
BseLI CCNNNNNNNGG 4 cut(s) 266, 699, 728, 731
BseMII CTCAG 2 cut(s) 408, 530
BseNI ACTGG 1 cut(s) 476
BseXI GCAGC 4 cut(s) 654, 676, 835, 916
Bsh1236I CGCG 3 cut(s) 80, 170, 487
BshFI GGCC 2 cut(s) 167, 237
BshNI GGYRCC 1 cut(s) 156
BshTI ACCGGT 1 cut(s) 150
BsiSI CCGG 4 cut(s) 151, 179, 266, 561
BslFI GGGAC 3 cut(s) 10, 152, 482
BslI CCNNNNNNNGG 4 cut(s) 266, 699, 728, 731
BsmAI GTCTC 2 cut(s) 189, 639
BsmBI CGTCTC 2 cut(s) 189, 639
BsmFI GGGAC 3 cut(s) 10, 152, 482
BsnI GGCC 2 cut(s) 167, 237
Bsp119I TTCGAA 2 cut(s) 50, 111
Bsp143I GATC 2 cut(s) 362, 385
BspANI GGCC 2 cut(s) 167, 237
BspCNI CTCAG 2 cut(s) 409, 529
BspFNI CGCG 3 cut(s) 80, 170, 487
BspLI GGNNCC 3 cut(s) 158, 408, 705
BspMI ACCTGC 1 cut(s) 843
BspQI GCTCTTC 1 cut(s) 574
BspT104I TTCGAA 2 cut(s) 50, 111
BspT107I GGYRCC 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 1 cut(s) 476
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 4 cut(s) 120, 179, 410, 561
BssMI GATC 2 cut(s) 362, 385
Bst2UI CCWGG 2 cut(s) 122, 161
Bst4CI ACNGT 2 cut(s) 190, 607
Bst6I CTCTTC 3 cut(s) 46, 60, 574
BstAPI GCANNNNNTGC 1 cut(s) 835
BstBI TTCGAA 2 cut(s) 50, 111
BstC8I GCNNGC 3 cut(s) 339, 343, 586
BstDEI CTNAG 2 cut(s) 417, 516
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 4 cut(s) 588, 676, 718, 787
BstFNI CGCG 3 cut(s) 80, 170, 487
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 2 cut(s) 365, 388
BstMAI GTCTC 2 cut(s) 189, 639
BstMBI GATC 2 cut(s) 362, 385
BstMWI GCNNNNNNNGC 7 cut(s) 530, 673, 695, 724, 835, 901, 913
BstNI CCWGG 2 cut(s) 122, 161
BstSCI CCNGG 5 cut(s) 120, 159, 178, 265, 560
BstUI CGCG 3 cut(s) 80, 170, 487
BstV1I GCAGC 4 cut(s) 654, 676, 835, 916
BstV2I GAAGAC 2 cut(s) 191, 774
BstX2I RGATCY 1 cut(s) 362
BstXI CCANNNNNNTGG 2 cut(s) 714, 794
BstYI RGATCY 1 cut(s) 362
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 167, 237
BtgI CCRYGG 1 cut(s) 410
BtgZI GCGATG 1 cut(s) 185
BtrI CACGTC 2 cut(s) 199, 622
BtsCI GGATG 4 cut(s) 588, 676, 718, 787
BtsIMutI CAGTG 1 cut(s) 719
BveI ACCTGC 1 cut(s) 843
Cac8I GCNNGC 3 cut(s) 339, 343, 586
CaiI CAGNNNCTG 1 cut(s) 835
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 832, 869
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 3 cut(s) 130, 211, 862
CspAI ACCGGT 1 cut(s) 150
CviAII CATG 5 cut(s) 311, 593, 745, 764, 778
CviQI GTAC 3 cut(s) 130, 211, 862
DdeI CTNAG 2 cut(s) 417, 516
DpnI GATC 2 cut(s) 364, 387
DpnII GATC 2 cut(s) 362, 385
DraIII CACNNNGTG 1 cut(s) 163
EaeI YGGCCR 2 cut(s) 165, 235
Eam1104I CTCTTC 3 cut(s) 46, 60, 574
EarI CTCTTC 3 cut(s) 46, 60, 574
EciI GGCGGA 2 cut(s) 110, 711
Eco47I GGWCC 2 cut(s) 832, 869
Eco57I CTGAAG 2 cut(s) 366, 470
EcoO109I RGGNCCY 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 120, 159
Esp3I CGTCTC 2 cut(s) 189, 639
FaeI CATG 5 cut(s) 314, 596, 748, 767, 781
FaqI GGGAC 3 cut(s) 10, 152, 482
FatI CATG 5 cut(s) 310, 592, 744, 763, 777
FauI CCCGC 2 cut(s) 338, 921
Fnu4HI GCNGC 7 cut(s) 168, 316, 668, 690, 725, 849, 905
FokI GGATG 4 cut(s) 575, 663, 705, 774
Fsp4HI GCNGC 7 cut(s) 168, 316, 668, 690, 725, 849, 905
FspBI CTAG 1 cut(s) 525
GlaI GCGC 1 cut(s) 79
GluI GCNGC 7 cut(s) 168, 316, 668, 690, 725, 849, 905
GsuI CTGGAG 3 cut(s) 493, 621, 645
HaeIII GGCC 2 cut(s) 167, 237
HapII CCGG 4 cut(s) 151, 179, 266, 561
HhaI GCGC 1 cut(s) 80
Hin1II CATG 5 cut(s) 314, 596, 748, 767, 781
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 3 cut(s) 19, 262, 373
HpaII CCGG 4 cut(s) 151, 179, 266, 561
HphI GGTGA 3 cut(s) 202, 313, 511
Hpy166II GTNNAC 4 cut(s) 130, 304, 414, 742
Hpy188I TCNGA 3 cut(s) 261, 385, 681
Hpy188III TCNNGA 4 cut(s) 389, 638, 662, 889
Hpy8I GTNNAC 4 cut(s) 130, 304, 414, 742
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 3 cut(s) 39, 390, 394
HpyCH4III ACNGT 2 cut(s) 190, 607
HpyCH4IV ACGT 2 cut(s) 198, 621
HpyCH4V TGCA 2 cut(s) 823, 895
HpyF10VI GCNNNNNNNGC 7 cut(s) 530, 673, 695, 724, 835, 901, 913
HpyF3I CTNAG 2 cut(s) 417, 516
HpySE526I ACGT 2 cut(s) 198, 621
Hsp92II CATG 5 cut(s) 314, 596, 748, 767, 781
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 362, 385
LguI GCTCTTC 1 cut(s) 574
Lsp1109I GCAGC 4 cut(s) 654, 676, 835, 916
LweI GCATC 4 cut(s) 597, 685, 727, 882
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 198, 621
MaeIII GTNAC 2 cut(s) 499, 527
MalI GATC 2 cut(s) 364, 387
MboI GATC 2 cut(s) 362, 385
MboII GAAGA 9 cut(s) 33, 77, 196, 214, 357, 434, 463, 591, 774
MflI RGATCY 1 cut(s) 362
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 6 cut(s) 52, 218, 490, 682, 856, 877
MluNI TGGCCA 1 cut(s) 237
MnlI CCTC 8 cut(s) 208, 289, 316, 412, 468, 663, 681, 910
Mox20I TGGCCA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 542
MscI TGGCCA 1 cut(s) 237
MseI TTAA 1 cut(s) 753
MslI CAYNNNNRTG 3 cut(s) 295, 712, 792
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 4 cut(s) 151, 179, 266, 561
MspR9I CCNGG 5 cut(s) 122, 161, 180, 267, 562
MvaI CCWGG 2 cut(s) 122, 161
MvnI CGCG 3 cut(s) 80, 170, 487
MwoI GCNNNNNNNGC 7 cut(s) 530, 673, 695, 724, 835, 901, 913
NciI CCSGG 3 cut(s) 180, 267, 562
NdeII GATC 2 cut(s) 362, 385
NlaIII CATG 5 cut(s) 314, 596, 748, 767, 781
NlaIV GGNNCC 3 cut(s) 158, 408, 705
NmuCI GTSAC 2 cut(s) 499, 527
NspV TTCGAA 2 cut(s) 50, 111
PciSI GCTCTTC 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 19, 262, 373
PfoI TCCNGGA 1 cut(s) 265
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 7 cut(s) 169, 317, 669, 691, 726, 850, 906
PpuMI RGGWCCY 1 cut(s) 832
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 2 cut(s) 120, 159
PspGI CCWGG 2 cut(s) 120, 159
PspN4I GGNNCC 3 cut(s) 158, 408, 705
PspPI GGNCC 2 cut(s) 832, 869
PspPPI RGGWCCY 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 835
PsuI RGATCY 1 cut(s) 362
RsaI GTAC 3 cut(s) 131, 212, 863
RsaNI GTAC 3 cut(s) 130, 211, 862
RseI CAYNNNNRTG 3 cut(s) 295, 712, 792
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 7 cut(s) 168, 316, 668, 690, 725, 849, 905
Sau3AI GATC 2 cut(s) 362, 385
Sau96I GGNCC 2 cut(s) 832, 869
ScrFI CCNGG 5 cut(s) 122, 161, 180, 267, 562
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 4 cut(s) 597, 685, 727, 882
SfuI TTCGAA 2 cut(s) 50, 111
SinI GGWCC 2 cut(s) 832, 869
SmiMI CAYNNNNRTG 3 cut(s) 295, 712, 792
Sse9I AATT 6 cut(s) 52, 218, 490, 682, 856, 877
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 5 cut(s) 120, 159, 178, 265, 560
TaaI ACNGT 2 cut(s) 190, 607
TaiI ACGT 2 cut(s) 201, 624
TaqI TCGA 4 cut(s) 44, 50, 63, 111
TasI AATT 6 cut(s) 52, 218, 490, 682, 856, 877
TauI GCSGC 3 cut(s) 170, 318, 727
TfiI GAWTC 3 cut(s) 19, 262, 373
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 1 cut(s) 719
TseFI GTSAC 2 cut(s) 499, 527
TseI GCWGC 4 cut(s) 667, 689, 848, 904
Tsp45I GTSAC 2 cut(s) 499, 527
TspDTI ATGAA 3 cut(s) 17, 535, 766
TspGWI ACGGA 2 cut(s) 399, 621
TspRI CASTG 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 832, 869
XapI RAATTY 3 cut(s) 490, 682, 877
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.