Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006152

Physical Location & Seq

Genomic Coordinates Reverse (-)

9298788 .. 9303398

Gene Structure 4611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

ATGAACCATGCAGTGAGGGAGGTGGAGAAGAATGCTTATTGCAATGGGGATTGTGGCGGTGTTTGTGTTTATTGCTTGTCCTCTTCAACTTCTTCATCTTCTTCCAATTCATCCTCAGCTCCTGTGGCTTCCTCAATTTATCTGGAGCTTTGGCATGCTTGTGCTGGCCCTCTTATCTCACTCCCCAAGAAGGGGAATGTGGTTGTCTACTTCCCACAAGGCCACTTGGAGCAAGTTGCCTCCTCCTCTCCTTTCTCTCCCATGGAGATGCCCACCTTTGATCTCCACCCTCAGATCTTCTGCAAGGTTGTGAATGTCCAGCTGCTTGCTAACAAGGAGAATGATGAGGTCTACACACATGTCACCTTGCTTCCTCAGCCTGAGTTGGTAGGAACAAATTTGGAAGGGAAAGGGCTTGAAGAGTTGGGAGTGGATGAGGGGGATGGAGGATCACCTACAAAATCAACCCCTCACATGTTCTGCAAAACGCTTACAGCTTCTGATACCAGTACACACGGAGGGTTTTCCGTTCCTCGGAGAGCTGCTGAAGACTGCTTTCCTCCATTGGACTATAAACAGCAGAGGCCATCTCAAGAACTTGTTGCAAAGGACCTACACGGGGTAGAGTGGAGGTTTCGACATATTTATAGAGGTCAGCCAAGGCGACATCTGCTTACTACAGGATGGAGTATTTTCATAAGCCAAAAGAATCTTGTAGCGGGGGATGCTGTGCTATTTTTGAGGGGTGAAAATGGAGAGCTGAGGTTGGGAATTAGAAGAGCTGTTCGACCTAGAAATGGTCTTCCTGATTCTGTTGTAGGCAACCAGAATTCGTACCCCAGTGTTCTTTCTCTCGTGGCTAATGCGATATCCACCAAGAGCATGTTTCATGTATTCTACAGTCCAAGGGCAAGCCATGCAGAATTTGTCATTCCCTACCAAAAATATGTCAGAAGCATCGCTAATCCGGTGACTACGGGGAATAGATTCAAAATGAGATTTGATAGGGATGATTCATCTGAAAGAAGGTGTAGCGGTGTAGTGACTGGTATCACCGACTTGGATCCGTTTCGATGGCCAAACTCAAAATGGAGATGCTTGATGGTCAGATGGGATGAAGATATAGGAAATGATCATCAAGAAAGAGTCTCGCCGTGGGAGGTTGATCCTTCTGTTTCTCTCCCACCTTTGAGCATCCAGTCTTCTCCAAGACTGAAGAAACTGCGGACAAGTCTGCAGGGAACCCCACCCGTCCACTCCATGACTGCTGGAGGGGCTGGGTTTAAGGACTTTGAGGAATCAGTTAAATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATAGGTTTCATATCACCCCTCTACGGGGGTGATACTGTAAACCGCCCGCAAGATTTTGAGATGCATGCTTCGGCACATCTAAGTCTTGCATCAAATGCAACACAGAAGGCTACTATTGATGAGCTTATGAGGGCTCACCGCACCCCCTACACAGGATTTGCGGAATCAGATAGATTTCCAAAAGTCTTGCAAGGTCAAGAAATATGCCCATTGAGATCGTTGACAGGAAAAGCAAATTTCACCCTGGGTGATTGGGAATCCAACAATGGTTGCGCACCTTTCAACGTTTATCAACCGCCCAAACCAAATTATTTCTCTCTAGCTTCTGGATCCCTTCCAAATATGTACTTTCCTTATGGTGACATTCACAGAGCTGGCCAAGATCCCACAATGTGCTCTAATGCTACTAACTTAGCCAGAGAGAAAGTGCAAATCAACCCGTATTCTATGCAGATGGGAGTTGCGAGAAATGAAGTTGGAAGGCCAAATAAACCTAGTGAGCATAAGACACAGGAGAGTACTTCTACCCTTCCCGCTTTAGTGCCAATTCCAAGAAATCCAAATGATAAAGACTATAACGGGACTGTTACTGGGTGTAAACTTTTTGGTTTTTCCTTGACTGGGGACAATCCCTCTCCAAACTCTCAGAGTTCCAGTAAGCGGAGTTGTACAAAGGTTCACAAGCAAGGCAGCTTAGTGGGAAGAGCCATTGATCTCGCAAAACTGAATGGCTATGGTGACCTGCTGACCGAACTGGAGCGGCTGTTTGGCATGGAAGGCCTTCTTCGAGATTCTGATAAAGGATGGCGGATCTTGTACACTGATAGTGAGAACGATATGATGGTTGTTGGGGATGACCCATGGCATGAGTTTTGCAATGTGGTCTCCAAAATCCATATATATACCCAGGAAGAAGTGGAGAAGATGACCATCGGAATGATCAGCGATGATACTCAAAGTTGTTTGGAACAGGCGCCGGTCGTGCTTGAAGTGTCAAAGTCCTCATCCGTTAGCCAGCCGGATTCTTCTCCGACGGCTATCCGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009987 GO:0010050 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

796

Amino Acids

87.77

Weight (kDa)

6.53

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	160 - 261	1.3e-22	B3 DNA binding domain
BRWD_AD	PF25313	291 - 390	1.1e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	309 - 391	7.8e-34	Auxin response factor ancillary domain
AUX_IAA	PF02309	663 - 751	7.2e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60450 AT5G60450
fragaria_vesca	FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860
malus_domestica	MD03G1116000.v1.1 MD11G1132400.v1.1
prunus_persica	Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1
pyrus_communis	pycom11g10920
rosa_chinensis	RchiOBHm_Chr5g0060011
rosa_laevigata	RLG00000035338
rosa_multiflora	Rmu_sc0000493.1_g000006
rosa_roxburghii	Rroxscaffold_1G00020650
rosa_rugosa	Rorug05G0327400 Rorug05G0327500 Rorug05G0327600
rosa_samantha	Rh5AG391400 Rh5BG404000 Rh5CG427800 Rh5DG419600
rosa_wichuraiana	Rw5G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1612
Acc36I	ACCTGC	1 cut(s)	2088
AccB1I	GGYRCC	1 cut(s)	2311
AccBSI	CCGCTC	1 cut(s)	2098
AccI	GTMKAC	2 cut(s)	207, 351
AclI	AACGTT	1 cut(s)	1623
AclWI	GGATC	8 cut(s)	457, 1058, 1071, 1160, 1662, 1675, 1715, 2156
AcoI	YGGCCR	2 cut(s)	1076, 1714
AcsI	RAATTY	4 cut(s)	397, 829, 923, 1573
AcuI	CTGAAG	2 cut(s)	567, 1235
AcyI	GRCGYC	1 cut(s)	2312
AdeI	CACNNNGTG	1 cut(s)	1731
AfaI	GTAC	6 cut(s)	511, 836, 1685, 1858, 2008, 2156
AflIII	ACRYGT	2 cut(s)	358, 474
AgsI	TTSAA	5 cut(s)	87, 419, 991, 1621, 2327
AjnI	CCWGG	2 cut(s)	1581, 2244
Alw21I	GWGCWC	1 cut(s)	1736
Alw26I	GTCTC	2 cut(s)	1153, 2227
AlwI	GGATC	8 cut(s)	457, 1058, 1071, 1160, 1662, 1675, 1715, 2156
AlwNI	CAGNNNCTG	2 cut(s)	122, 500
AoxI	GGCC	7 cut(s)	166, 220, 584, 1076, 1714, 1820, 2116
ApeKI	GCWGC	3 cut(s)	322, 542, 2028
ApoI	RAATTY	4 cut(s)	397, 829, 923, 1573
Asp700I	GAANNNNTTC	2 cut(s)	986, 2118
AspLEI	GCGC	2 cut(s)	1613, 2314
AspS9I	GGNCC	2 cut(s)	167, 610
AsuC2I	CCSGG	1 cut(s)	2381
AvaII	GGWCC	1 cut(s)	610
BalI	TGGCCA	2 cut(s)	1078, 1716
BamHI	GGATCC	2 cut(s)	1063, 1667
BanI	GGYRCC	1 cut(s)	2311
BanII	GRGCYC	1 cut(s)	1474
BauI	CACGAG	1 cut(s)	854
BbsI	GAAGAC	3 cut(s)	555, 794, 1194
Bbv12I	GWGCWC	1 cut(s)	1736
BbvCI	CCTCAGC	3 cut(s)	115, 375, 761
BbvI	GCAGC	3 cut(s)	309, 529, 2040
BceAI	ACGGC	1 cut(s)	1138
BciT130I	CCWGG	2 cut(s)	1583, 2246
BclI	TGATCA	2 cut(s)	1132, 2277
BcnI	CCSGG	1 cut(s)	2381
BcoDI	GTCTC	2 cut(s)	1153, 2227
BfaI	CTAG	3 cut(s)	792, 1658, 1833
BfmI	CTRYAG	3 cut(s)	678, 898, 1235
BfoI	RGCGCY	1 cut(s)	2315
BfuAI	ACCTGC	1 cut(s)	2088
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	4 cut(s)	323, 543, 2029, 2099
BlsI	GCNGC	4 cut(s)	324, 544, 2030, 2100
BmcAI	AGTACT	1 cut(s)	1858
Bme1390I	CCNGG	3 cut(s)	1583, 2246, 2381
Bme18I	GGWCC	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	167, 610
BmiI	GGNNCC	4 cut(s)	1065, 1243, 1669, 2313
BmrFI	CCNGG	3 cut(s)	1583, 2246, 2381
BmrI	ACTGGG	3 cut(s)	834, 1938, 1968
BmsI	GCATC	7 cut(s)	258, 715, 966, 1085, 1203, 1389, 1436
BmuI	ACTGGG	3 cut(s)	834, 1938, 1968
BpiI	GAAGAC	3 cut(s)	555, 794, 1194
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	3 cut(s)	164, 1290, 2114
Bpu10I	CCTNAGC	3 cut(s)	115, 375, 761
BpuEI	CTTGAG	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	2381
BsaBI	GATNNNNATC	1 cut(s)	2267
BsaHI	GRCGYC	1 cut(s)	2312
BsaI	GGTCTC	1 cut(s)	2227
BsaJI	CCNNGG	9 cut(s)	261, 533, 659, 905, 1154, 1581, 1582, 2198, 2244
BsaWI	WCCGGW	1 cut(s)	967
BsaXI	ACNNNNNCTCC	2 cut(s)	2087, 2117
Bse118I	RCCGGY	1 cut(s)	2314
Bse1I	ACTGG	8 cut(s)	507, 840, 1051, 1198, 1933, 1963, 1992, 2097
Bse3DI	GCAATG	2 cut(s)	49, 2221
Bse8I	GATNNNNATC	1 cut(s)	2267
BseBI	CCWGG	2 cut(s)	1583, 2246
BseDI	CCNNGG	9 cut(s)	261, 533, 659, 905, 1154, 1581, 1582, 2198, 2244
BseJI	GATNNNNATC	1 cut(s)	2267
BseMI	GCAATG	2 cut(s)	49, 2221
BseMII	CTCAG	6 cut(s)	129, 305, 372, 389, 752, 1997
BseNI	ACTGG	8 cut(s)	507, 840, 1051, 1198, 1933, 1963, 1992, 2097
BseRI	GAGGAG	2 cut(s)	232, 235
BseXI	GCAGC	3 cut(s)	309, 529, 2040
BseYI	CCCAGC	1 cut(s)	1277
Bsh1285I	CGRYCG	1 cut(s)	2319
BshFI	GGCC	7 cut(s)	168, 222, 586, 1078, 1716, 1822, 2118
BshNI	GGYRCC	1 cut(s)	2311
BsiEI	CGRYCG	1 cut(s)	2319
BsiHKAI	GWGCWC	1 cut(s)	1736
BsiSI	CCGG	4 cut(s)	968, 2315, 2357, 2380
BslFI	GGGAC	2 cut(s)	1933, 1976
BsmAI	GTCTC	2 cut(s)	1153, 2227
BsmFI	GGGAC	2 cut(s)	1933, 1976
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	7 cut(s)	168, 222, 586, 1078, 1716, 1822, 2118
Bso31I	GGTCTC	1 cut(s)	2227
Bsp1286I	GDGCHC	2 cut(s)	1474, 1736
Bsp1407I	TGTACA	2 cut(s)	2006, 2154
Bsp19I	CCATGG	2 cut(s)	261, 2198
BspANI	GGCC	7 cut(s)	168, 222, 586, 1078, 1716, 1822, 2118
BspCNI	CTCAG	6 cut(s)	128, 304, 373, 388, 753, 1996
BspLI	GGNNCC	4 cut(s)	1065, 1243, 1669, 2313
BspMAI	CTGCAG	1 cut(s)	1239
BspMI	ACCTGC	1 cut(s)	2088
BspPI	GGATC	8 cut(s)	457, 1058, 1071, 1160, 1662, 1675, 1715, 2156
BspQI	GCTCTTC	2 cut(s)	772, 2035
BspT107I	GGYRCC	1 cut(s)	2311
BspTNI	GGTCTC	1 cut(s)	2227
BsrBI	CCGCTC	1 cut(s)	2098
BsrDI	GCAATG	2 cut(s)	49, 2221
BsrFI	RCCGGY	1 cut(s)	2314
BsrGI	TGTACA	2 cut(s)	2006, 2154
BsrI	ACTGG	8 cut(s)	507, 840, 1051, 1198, 1933, 1963, 1992, 2097
BssAI	RCCGGY	1 cut(s)	2314
BssECI	CCNNGG	9 cut(s)	261, 533, 659, 905, 1154, 1581, 1582, 2198, 2244
BssNI	GRCGYC	1 cut(s)	2312
BssSI	CACGAG	1 cut(s)	854
BssT1I	CCWWGG	4 cut(s)	261, 659, 905, 2198
Bst2BI	CACGAG	1 cut(s)	854
Bst2UI	CCWGG	2 cut(s)	1583, 2246
Bst4CI	ACNGT	3 cut(s)	902, 1375, 1924
Bst6I	CTCTTC	4 cut(s)	88, 414, 772, 2035
BstACI	GRCGYC	1 cut(s)	2312
BstAPI	GCANNNNNTGC	2 cut(s)	917, 1433
BstAUI	TGTACA	2 cut(s)	2006, 2154
BstC8I	GCNNGC	8 cut(s)	156, 166, 327, 913, 1385, 1404, 1714, 2354
BstDSI	CCRYGG	3 cut(s)	261, 1154, 2198
BstEII	GGTNACC	1 cut(s)	2075
BstH2I	RGCGCY	1 cut(s)	2315
BstHHI	GCGC	2 cut(s)	1613, 2314
BstMAI	GTCTC	2 cut(s)	1153, 2227
BstMCI	CGRYCG	1 cut(s)	2319
BstMWI	GCNNNNNNNGC	9 cut(s)	125, 376, 670, 725, 917, 1274, 1433, 2115, 2320
BstNI	CCWGG	2 cut(s)	1583, 2246
BstNSI	RCATGY	5 cut(s)	158, 362, 478, 886, 1406
BstPI	GGTNACC	1 cut(s)	2075
BstSCI	CCNGG	3 cut(s)	1581, 2244, 2379
BstSFI	CTRYAG	3 cut(s)	678, 898, 1235
BstV1I	GCAGC	3 cut(s)	309, 529, 2040
BstV2I	GAAGAC	3 cut(s)	555, 794, 1194
BstX2I	RGATCY	5 cut(s)	294, 1063, 1667, 1720, 2148
BstYI	RGATCY	5 cut(s)	294, 1063, 1667, 1720, 2148
BsuRI	GGCC	7 cut(s)	168, 222, 586, 1078, 1716, 1822, 2118
BtgI	CCRYGG	3 cut(s)	261, 1154, 2198
BtgZI	GCGATG	2 cut(s)	943, 2298
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 847, 2157
BveI	ACCTGC	1 cut(s)	2088
Cac8I	GCNNGC	8 cut(s)	156, 166, 327, 913, 1385, 1404, 1714, 2354
CaiI	CAGNNNCTG	2 cut(s)	122, 500
CfoI	GCGC	2 cut(s)	1613, 2314
Cfr10I	RCCGGY	1 cut(s)	2314
Cfr13I	GGNCC	2 cut(s)	167, 610
Csp6I	GTAC	6 cut(s)	510, 835, 1684, 1857, 2007, 2155
CviQI	GTAC	6 cut(s)	510, 835, 1684, 1857, 2007, 2155
DinI	GGCGCC	1 cut(s)	2313
DraIII	CACNNNGTG	1 cut(s)	1731
EaeI	YGGCCR	2 cut(s)	1076, 1714
Eam1104I	CTCTTC	4 cut(s)	88, 414, 772, 2035
EarI	CTCTTC	4 cut(s)	88, 414, 772, 2035
EciI	GGCGGA	1 cut(s)	2161
Eco130I	CCWWGG	4 cut(s)	261, 659, 905, 2198
Eco147I	AGGCCT	1 cut(s)	2118
Eco24I	GRGCYC	1 cut(s)	1474
Eco31I	GGTCTC	1 cut(s)	2227
Eco32I	GATATC	1 cut(s)	870
Eco47I	GGWCC	1 cut(s)	610
Eco57I	CTGAAG	2 cut(s)	567, 1235
Eco91I	GGTNACC	1 cut(s)	2075
EcoO109I	RGGNCCY	1 cut(s)	610
EcoO65I	GGTNACC	1 cut(s)	2075
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	1581, 2244
EcoRV	GATATC	1 cut(s)	870
EcoT14I	CCWWGG	4 cut(s)	261, 659, 905, 2198
EcoT22I	ATGCAT	1 cut(s)	1404
EcoT38I	GRGCYC	1 cut(s)	1474
EgeI	GGCGCC	1 cut(s)	2313
EheI	GGCGCC	1 cut(s)	2313
ErhI	CCWWGG	4 cut(s)	261, 659, 905, 2198
FalI	AAGNNNNNCTT	2 cut(s)	2106, 2138
FaqI	GGGAC	2 cut(s)	1933, 1976
FauI	CCCGC	3 cut(s)	712, 1392, 1879
FbaI	TGATCA	2 cut(s)	1132, 2277
FblI	GTMKAC	2 cut(s)	207, 351
Fnu4HI	GCNGC	4 cut(s)	323, 543, 2029, 2099
FriOI	GRGCYC	1 cut(s)	1474
Fsp4HI	GCNGC	4 cut(s)	323, 543, 2029, 2099
FspBI	CTAG	3 cut(s)	792, 1658, 1833
FspI	TGCGCA	1 cut(s)	1612
GlaI	GCGC	2 cut(s)	1612, 2313
GluI	GCNGC	4 cut(s)	323, 543, 2029, 2099
GsaI	CCCAGC	1 cut(s)	1281
GsuI	CTGGAG	3 cut(s)	164, 1290, 2114
HaeII	RGCGCY	1 cut(s)	2315
HaeIII	GGCC	7 cut(s)	168, 222, 586, 1078, 1716, 1822, 2118
HapII	CCGG	4 cut(s)	968, 2315, 2357, 2380
HhaI	GCGC	2 cut(s)	1613, 2314
Hin1I	GRCGYC	1 cut(s)	2312
Hin6I	GCGC	2 cut(s)	1611, 2312
HinP1I	GCGC	2 cut(s)	1611, 2312
HincII	GTYRAC	1 cut(s)	1560
HindII	GTYRAC	1 cut(s)	1560
HpaII	CCGG	4 cut(s)	968, 2315, 2357, 2380
Hpy166II	GTNNAC	9 cut(s)	208, 352, 512, 1255, 1378, 1560, 1937, 2017, 2157
Hpy188III	TCNNGA	8 cut(s)	143, 593, 806, 1139, 1331, 1535, 1665, 2126
Hpy8I	GTNNAC	9 cut(s)	208, 352, 512, 1255, 1378, 1560, 1937, 2017, 2157
Hpy99I	CGWCG	1 cut(s)	2374
HpyCH4III	ACNGT	3 cut(s)	902, 1375, 1924
HpyCH4IV	ACGT	1 cut(s)	1623
HpyF10VI	GCNNNNNNNGC	9 cut(s)	125, 376, 670, 725, 917, 1274, 1433, 2115, 2320
HpySE526I	ACGT	1 cut(s)	1623
Hsp92I	GRCGYC	1 cut(s)	2312
HspAI	GCGC	2 cut(s)	1611, 2312
KasI	GGCGCC	1 cut(s)	2311
Ksp22I	TGATCA	2 cut(s)	1132, 2277
LguI	GCTCTTC	2 cut(s)	772, 2035
LmnI	GCTCC	4 cut(s)	124, 145, 229, 2095
Lsp1109I	GCAGC	3 cut(s)	309, 529, 2040
LweI	GCATC	7 cut(s)	258, 715, 966, 1085, 1203, 1389, 1436
MaeI	CTAG	3 cut(s)	792, 1658, 1833
MaeII	ACGT	1 cut(s)	1623
MaeIII	GTNAC	6 cut(s)	361, 970, 1042, 1697, 1924, 2075
MbiI	CCGCTC	1 cut(s)	2098
MflI	RGATCY	5 cut(s)	294, 1063, 1667, 1720, 2148
MhlI	GDGCHC	2 cut(s)	1474, 1736
MlsI	TGGCCA	2 cut(s)	1078, 1716
MluCI	AATT	9 cut(s)	106, 135, 397, 771, 829, 923, 1573, 1645, 1884
MluNI	TGGCCA	2 cut(s)	1078, 1716
Mly113I	GGCGCC	1 cut(s)	2312
MlyI	GAGTC	1 cut(s)	1155
MmeI	TCCRAC	2 cut(s)	1623, 1795
Mox20I	TGGCCA	2 cut(s)	1078, 1716
Mph1103I	ATGCAT	1 cut(s)	1404
MroXI	GAANNNNTTC	2 cut(s)	986, 2118
MscI	TGGCCA	2 cut(s)	1078, 1716
MseI	TTAA	2 cut(s)	1284, 1305
MslI	CAYNNNNRTG	3 cut(s)	159, 266, 2273
Msp20I	TGGCCA	2 cut(s)	1078, 1716
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	4 cut(s)	968, 2315, 2357, 2380
MspR9I	CCNGG	3 cut(s)	1583, 2246, 2381
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	2 cut(s)	1583, 2246
MwoI	GCNNNNNNNGC	9 cut(s)	125, 376, 670, 725, 917, 1274, 1433, 2115, 2320
NarI	GGCGCC	1 cut(s)	2312
NciI	CCSGG	1 cut(s)	2381
NcoI	CCATGG	2 cut(s)	261, 2198
NlaIV	GGNNCC	4 cut(s)	1065, 1243, 1669, 2313
NmuCI	GTSAC	5 cut(s)	361, 970, 1042, 1697, 2075
NsbI	TGCGCA	1 cut(s)	1612
NsiI	ATGCAT	1 cut(s)	1404
NspI	RCATGY	5 cut(s)	158, 362, 478, 886, 1406
PaeI	GCATGC	2 cut(s)	158, 1406
PasI	CCCWGGG	1 cut(s)	1582
PceI	AGGCCT	1 cut(s)	2118
PciI	ACATGT	2 cut(s)	358, 474
PciSI	GCTCTTC	2 cut(s)	772, 2035
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	2 cut(s)	986, 2118
PfeI	GAWTC	9 cut(s)	709, 809, 987, 1013, 1298, 1502, 1595, 2129, 2360
PkrI	GCNGC	4 cut(s)	324, 544, 2030, 2100
PleI	GAGTC	1 cut(s)	1154
PluTI	GGCGCC	1 cut(s)	2315
PpsI	GAGTC	1 cut(s)	1154
PpuMI	RGGWCCY	1 cut(s)	610
PscI	ACATGT	2 cut(s)	358, 474
Psp1406I	AACGTT	1 cut(s)	1623
Psp5II	RGGWCCY	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	1581, 2244
PspEI	GGTNACC	1 cut(s)	2075
PspFI	CCCAGC	1 cut(s)	1277
PspGI	CCWGG	2 cut(s)	1581, 2244
PspN4I	GGNNCC	4 cut(s)	1065, 1243, 1669, 2313
PspPI	GGNCC	2 cut(s)	167, 610
PspPPI	RGGWCCY	1 cut(s)	610
PstI	CTGCAG	1 cut(s)	1239
PstNI	CAGNNNCTG	2 cut(s)	122, 500
PsuI	RGATCY	5 cut(s)	294, 1063, 1667, 1720, 2148
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	6 cut(s)	511, 836, 1685, 1858, 2008, 2156
RsaNI	GTAC	6 cut(s)	510, 835, 1684, 1857, 2007, 2155
RseI	CAYNNNNRTG	3 cut(s)	159, 266, 2273
SapI	GCTCTTC	2 cut(s)	772, 2035
SaqAI	TTAA	2 cut(s)	1284, 1305
SatI	GCNGC	4 cut(s)	323, 543, 2029, 2099
Sau96I	GGNCC	2 cut(s)	167, 610
ScaI	AGTACT	1 cut(s)	1858
SchI	GAGTC	1 cut(s)	1155
ScrFI	CCNGG	3 cut(s)	1583, 2246, 2381
SduI	GDGCHC	2 cut(s)	1474, 1736
SfaNI	GCATC	7 cut(s)	258, 715, 966, 1085, 1203, 1389, 1436
SfcI	CTRYAG	3 cut(s)	678, 898, 1235
SfoI	GGCGCC	1 cut(s)	2313
SinI	GGWCC	1 cut(s)	610
SmiMI	CAYNNNNRTG	3 cut(s)	159, 266, 2273
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
SphI	GCATGC	2 cut(s)	158, 1406
Sse9I	AATT	9 cut(s)	106, 135, 397, 771, 829, 923, 1573, 1645, 1884
SseBI	AGGCCT	1 cut(s)	2118
SspDI	GGCGCC	1 cut(s)	2311
SspMI	CTAG	3 cut(s)	792, 1658, 1833
StuI	AGGCCT	1 cut(s)	2118
StyD4I	CCNGG	3 cut(s)	1581, 2244, 2379
StyI	CCWWGG	4 cut(s)	261, 659, 905, 2198
TaaI	ACNGT	3 cut(s)	902, 1375, 1924
TaiI	ACGT	1 cut(s)	1626
TaqI	TCGA	4 cut(s)	637, 787, 1072, 2125
TaqII	GACCGA	1 cut(s)	2102
TasI	AATT	9 cut(s)	106, 135, 397, 771, 829, 923, 1573, 1645, 1884
TatI	WGTACW	5 cut(s)	509, 1683, 1856, 2006, 2154
TauI	GCSGC	1 cut(s)	2101
TfiI	GAWTC	9 cut(s)	709, 809, 987, 1013, 1298, 1502, 1595, 2129, 2360
Tru1I	TTAA	2 cut(s)	1284, 1305
Tru9I	TTAA	2 cut(s)	1284, 1305
TscAI	CASTG	3 cut(s)	18, 847, 2164
TseFI	GTSAC	5 cut(s)	361, 970, 1042, 1697, 2075
TseI	GCWGC	3 cut(s)	322, 542, 2028
Tsp45I	GTSAC	5 cut(s)	361, 970, 1042, 1697, 2075
TspDTI	ATGAA	9 cut(s)	17, 84, 99, 685, 878, 1005, 1131, 1336, 1824
TspGWI	ACGGA	4 cut(s)	517, 531, 1056, 2335
TspRI	CASTG	3 cut(s)	18, 847, 2164
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	4 cut(s)	397, 829, 923, 1573
XceI	RCATGY	5 cut(s)	158, 362, 478, 886, 1406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1086
XmiI	GTMKAC	2 cut(s)	207, 351
XmnI	GAANNNNTTC	2 cut(s)	986, 2118
XspI	CTAG	3 cut(s)	792, 1658, 1833
ZrmI	AGTACT	1 cut(s)	1858
Zsp2I	ATGCAT	1 cut(s)	1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.