Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005910

Physical Location & Seq

Genomic Coordinates Reverse (-)

11033992 .. 11035155

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCTTTTGACTTTGAGTCAGCAAACATTACTTTCAATTGCTACCCAGACTGTGACAAGCACTTTCCCACACTTCAACTACCTAAATGTGTTTTCTTCCACTCAGAAGTTTATTTTGAAATGGATAATATATTTGGAAAAACAGATAAGCCCAAATGACTTACCGACCAGTGCAGTGCATCAAGGTTTTGTAGTGAGGCCAGATACAAACCTCAAATTTGAATCTAAAGCTGATGTGCTGTTTTTCACAAGGGAGTTAAACTCTGGAGTAGCAAGTCTTCCCAACTTTACCATGCGTAAAGCTTTTTCTGAGGTCGTCGCTGGAATATTCGCTGCAGATTCAGGATTTCCTTCTATCCTGTTGAGGGAAAAATCTTCACCAGGTCTAGATAAGAGTATTCAGAAAACTAGGGCAAGGGATCATAGTGTAGAAAGGACTAGTGATAAAGGAACTCGGAAATCTGAAGATGTTTTATCTGTCCGGGAAAGCTTTAGTGGGACCAATAGCACAAATGTTGACTCCTATCTACAAAGAGGCAGTAATGTAGTTAGTGTGGACCTGAACAACGGTGAAAAGTTAAAAATGATCCATTTTTTAAAACATGTAATAGTGTATGTTGGATTTGAGCATGAGTGCCCCCATGGCCACCGTGTTCTATTAAATCCAGAGCATCTTAATGACCTGCCAGATAATTCTAAACTGAGTAAGAATGGTTTCCGTGGTAATGTTCACCGCAATTTAAATAGGATGGCTGCTGCCGCTGCAAATAAAGAGGGACATGTAACTAAGTCAAAAGAGATAGTAACTAATGGTAATCTGAAAATAGATCGGCTACTGCAGTCAGGACAAAGGAAGGAGCAAAATCACACATCTTTTAGTGCATCTGCAATCCATAATTTGTCCAAACGTCTTGTAGCCTTAATGATGGTGGATGTGCTTTCTCTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Smg8_Smg9

Protein Analysis

317

Amino Acids

35.26

Weight (kDa)

9.6

Isoelectric Point (pI)

22.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30640 FvH4_3g30640 FvH4_3g30640 FvH4_3g30640
malus_domestica	MD03G1129000.v1.1
prunus_persica	Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1
pyrus_communis	pycom11g12120 pycom11g12130
rosa_chinensis	RchiOBHm_Chr5g0056861
rosa_laevigata	RLG00000035131
rosa_multiflora	Rmu_sc0001460.1_g000021
rosa_roxburghii	Rroxscaffold_1G00023440
rosa_rugosa	Rorug05G0302800
rosa_samantha	Rh5AG373000 Rh5BG384000 Rh5CG407200 Rh5DG397200
rosa_wichuraiana	Rw5G034970 Rw5G035030 Rw5G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	690
AciI	CCGC	2 cut(s)	733, 759
AclWI	GGATC	2 cut(s)	426, 580
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	483
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	2 cut(s)	601, 778
AgsI	TTSAA	4 cut(s)	36, 76, 118, 221
AhdI	GACNNNNNGTC	1 cut(s)	15
AhlI	ACTAGT	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	3 cut(s)	230, 302, 489
AluI	AGCT	3 cut(s)	230, 302, 489
AlwI	GGATC	2 cut(s)	426, 580
AoxI	GGCC	2 cut(s)	197, 643
ApeKI	GCWGC	4 cut(s)	332, 752, 755, 761
ApoI	RAATTY	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	713
AspS9I	GGNCC	2 cut(s)	498, 556
AsuC2I	CCSGG	1 cut(s)	482
AsuHPI	GGTGA	3 cut(s)	369, 581, 722
AvaII	GGWCC	2 cut(s)	498, 556
BaeGI	GKGCMC	1 cut(s)	638
BalI	TGGCCA	1 cut(s)	645
BarI	GAAGNNNNNNTAC	2 cut(s)	261, 293
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	4 cut(s)	319, 739, 742, 748
BccI	CCATC	2 cut(s)	742, 919
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	482
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	3 cut(s)	386, 408, 438
BfmI	CTRYAG	2 cut(s)	333, 836
BfuAI	ACCTGC	1 cut(s)	690
BglI	GCCNNNNNGGC	1 cut(s)	642
BisI	GCNGC	5 cut(s)	333, 753, 756, 759, 762
BlsI	GCNGC	5 cut(s)	334, 754, 757, 760, 763
Bme1390I	CCNGG	2 cut(s)	381, 482
Bme18I	GGWCC	2 cut(s)	498, 556
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	498, 556
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	2 cut(s)	381, 482
BmsI	GCATC	3 cut(s)	187, 679, 890
BpiI	GAAGAC	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	640, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	640, 718
BseGI	GGATG	2 cut(s)	753, 937
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	3 cut(s)	116, 300, 692
BseNI	ACTGG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	4 cut(s)	319, 739, 742, 748
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	199, 645
BsiSI	CCGG	1 cut(s)	481
BslFI	GGGAC	2 cut(s)	511, 789
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	511, 789
BsnI	GGCC	2 cut(s)	199, 645
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp143I	GATC	3 cut(s)	418, 585, 826
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	2 cut(s)	733, 759
BspANI	GGCC	2 cut(s)	199, 645
BspCNI	CTCAG	3 cut(s)	115, 301, 693
BspLI	GGNNCC	1 cut(s)	499
BspMAI	CTGCAG	2 cut(s)	337, 840
BspMI	ACCTGC	1 cut(s)	690
BspPI	GGATC	2 cut(s)	426, 580
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	640, 718
BssMI	GATC	3 cut(s)	418, 585, 826
BssT1I	CCWWGG	1 cut(s)	640
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	52, 569, 650
BstDEI	CTNAG	4 cut(s)	102, 309, 701, 786
BstDSI	CCRYGG	2 cut(s)	640, 718
BstF5I	GGATG	2 cut(s)	753, 937
BstKTI	GATC	3 cut(s)	421, 588, 829
BstMBI	GATC	3 cut(s)	418, 585, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	642, 758, 761
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	605, 782
BstSCI	CCNGG	2 cut(s)	379, 480
BstSFI	CTRYAG	2 cut(s)	333, 836
BstSLI	GKGCMC	1 cut(s)	638
BstV1I	GCAGC	4 cut(s)	319, 739, 742, 748
BstV2I	GAAGAC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	199, 645
BtgI	CCRYGG	2 cut(s)	640, 718
BtsCI	GGATG	2 cut(s)	753, 937
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	175, 180
BveI	ACCTGC	1 cut(s)	690
Cfr13I	GGNCC	2 cut(s)	498, 556
CsiI	ACCWGGT	1 cut(s)	379
CviAII	CATG	5 cut(s)	292, 602, 629, 641, 779
CviJI	RGCY	9 cut(s)	150, 199, 230, 302, 489, 645, 752, 832, 917
CviKI_1	RGCY	9 cut(s)	150, 199, 230, 302, 489, 645, 752, 832, 917
DdeI	CTNAG	4 cut(s)	102, 309, 701, 786
DpnI	GATC	3 cut(s)	420, 587, 828
DpnII	GATC	3 cut(s)	418, 585, 826
DraI	TTTAAA	2 cut(s)	597, 741
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	643
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	640
Eco47I	GGWCC	2 cut(s)	498, 556
Eco57I	CTGAAG	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	5 cut(s)	295, 605, 632, 644, 782
FaqI	GGGAC	2 cut(s)	511, 789
FatI	CATG	5 cut(s)	291, 601, 628, 640, 778
Fnu4HI	GCNGC	5 cut(s)	333, 753, 756, 759, 762
FokI	GGATG	2 cut(s)	760, 944
Fsp4HI	GCNGC	5 cut(s)	333, 753, 756, 759, 762
FspBI	CTAG	3 cut(s)	386, 408, 438
GluI	GCNGC	5 cut(s)	333, 753, 756, 759, 762
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	199, 645
HapII	CCGG	1 cut(s)	481
Hin1II	CATG	5 cut(s)	295, 605, 632, 644, 782
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	2 cut(s)	300, 487
HinfI	GANTC	4 cut(s)	16, 221, 338, 518
HpaII	CCGG	1 cut(s)	481
HphI	GGTGA	3 cut(s)	369, 581, 722
Hpy166II	GTNNAC	3 cut(s)	517, 556, 730
Hpy188I	TCNGA	6 cut(s)	105, 310, 402, 456, 463, 819
Hpy188III	TCNNGA	5 cut(s)	264, 342, 386, 665, 843
Hpy8I	GTNNAC	3 cut(s)	517, 556, 730
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	360, 847
HpyCH4III	ACNGT	3 cut(s)	52, 569, 650
HpyCH4IV	ACGT	1 cut(s)	907
HpyCH4V	TGCA	7 cut(s)	173, 178, 335, 764, 838, 881, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	642, 758, 761
HpyF3I	CTNAG	4 cut(s)	102, 309, 701, 786
HpySE526I	ACGT	1 cut(s)	907
Hsp92II	CATG	5 cut(s)	295, 605, 632, 644, 782
Kzo9I	GATC	3 cut(s)	418, 585, 826
LmnI	GCTCC	1 cut(s)	856
Lsp1109I	GCAGC	4 cut(s)	319, 739, 742, 748
LweI	GCATC	3 cut(s)	187, 679, 890
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	3 cut(s)	386, 408, 438
MaeII	ACGT	1 cut(s)	907
MaeIII	GTNAC	3 cut(s)	52, 781, 802
MalI	GATC	3 cut(s)	420, 587, 828
MboI	GATC	3 cut(s)	418, 585, 826
MboII	GAAGA	4 cut(s)	87, 269, 366, 476
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	638
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	5 cut(s)	36, 215, 691, 736, 895
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	25, 512
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	6 cut(s)	189, 221, 304, 357, 527, 766
Mox20I	TGGCCA	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	7 cut(s)	257, 578, 596, 659, 675, 740, 920
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	1 cut(s)	481
MspR9I	CCNGG	2 cut(s)	381, 482
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	642, 758, 761
NciI	CCSGG	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	640
NdeII	GATC	3 cut(s)	418, 585, 826
NlaIII	CATG	5 cut(s)	295, 605, 632, 644, 782
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	2 cut(s)	605, 782
PciI	ACATGT	2 cut(s)	601, 778
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	2 cut(s)	221, 338
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	5 cut(s)	334, 754, 757, 760, 763
PleI	GAGTC	2 cut(s)	24, 512
PpsI	GAGTC	2 cut(s)	24, 512
PscI	ACATGT	2 cut(s)	601, 778
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	2 cut(s)	498, 556
PstI	CTGCAG	2 cut(s)	337, 840
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	7 cut(s)	257, 578, 596, 659, 675, 740, 920
SatI	GCNGC	5 cut(s)	333, 753, 756, 759, 762
Sau3AI	GATC	3 cut(s)	418, 585, 826
Sau96I	GGNCC	2 cut(s)	498, 556
SchI	GAGTC	2 cut(s)	25, 512
ScrFI	CCNGG	2 cut(s)	381, 482
SduI	GDGCHC	1 cut(s)	638
SexAI	ACCWGGT	1 cut(s)	379
SfaNI	GCATC	3 cut(s)	187, 679, 890
SfcI	CTRYAG	2 cut(s)	333, 836
SinI	GGWCC	2 cut(s)	498, 556
SmiI	ATTTAAAT	1 cut(s)	741
SmiMI	CAYNNNNRTG	1 cut(s)	675
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	5 cut(s)	36, 215, 691, 736, 895
SsiI	CCGC	2 cut(s)	733, 759
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	3 cut(s)	386, 408, 438
StyD4I	CCNGG	2 cut(s)	379, 480
StyI	CCWWGG	1 cut(s)	640
SwaI	ATTTAAAT	1 cut(s)	741
TaaI	ACNGT	3 cut(s)	52, 569, 650
TaiI	ACGT	1 cut(s)	910
TasI	AATT	5 cut(s)	36, 215, 691, 736, 895
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	2 cut(s)	221, 338
Tru1I	TTAA	7 cut(s)	257, 578, 596, 659, 675, 740, 920
Tru9I	TTAA	7 cut(s)	257, 578, 596, 659, 675, 740, 920
TscAI	CASTG	2 cut(s)	175, 180
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	332, 752, 755, 761
Tsp45I	GTSAC	1 cut(s)	52
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	175, 180
VpaK11BI	GGWCC	2 cut(s)	498, 556
XapI	RAATTY	1 cut(s)	215
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	2 cut(s)	605, 782
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	3 cut(s)	386, 408, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.