Rw5G034970

Smg8_Smg9

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
60384973 .. 60390272
5300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034970.1

Sequence Viewer

Length: 3642 bp
ATGGACCCACCCAACCAGAACCCGAACCCGAACCCGGCATCTATGCGGGTCCTAATCCGCCCACCCCCTTCTTCCTATTCTTCACCTCCTTCCCAAACCATTCCGATTCCCTCCTCCTCCTCAGACCCTCCCTCCACCGACGGCGTCGTCGTGGTGGGCTTCATTGGGCCGCCGAGCACCGACCACTCGGCCCAGCTCATCAATCGGATCCTCGACTCCAACGTGTTCGGGTCGGGCAACCGGGACAAAAGCCTCGGCGTCGAGAACCAGGAGCAGCTCCGGGACTGGTTGAAGTGGCGGAGAATTAGTTACTACCATGAGGAGCAGAAGGGGATTCTGTTCTTGCAGTTTTGCTCCACGCTCTGCTCCGCCGTGGACGATAACGGGTTATCGGACTCCGGGTCGGGTTTCGACTCTGTGTTCGAAGAGCACGACTTTGGAGACCTCCAGGGGATGCTTTTCATGTTCTCTGTTTGCCATGTAATTATATATATTCTGGAGGGTTCACGGTTTGATACTCAACTCCTGAAAAAGTTTCGAGTGTTACAAGCTGCCAAGCATGCCTTGGCTCCATTAGTCAGACCCCGAAATATGCAGCCAACACCATCCAAGCCCTATTCGTCATCCTCAAGGCCTACCACATCTGCAACCTCTTCGAAAAATTCTTCTCCAGGTAGAGGTGGTGGCATGTTGACTCGCAATGCTTCTGCCATTTCGCTAATGTCAGGTTTAGGTTCCTACACTTCTTTGTTTCCTGGACAGTGTACCCCAGTCACACTGTTTGTTTTCATTGATGATTTCTCTGATGTGCCAAATCCCAGCTCTAGTGTGGAGGACTCGGCAGATACATCCTCACTAAATCAGCCTTCTAGTTTGGGCACTTCAGCAAGGCCAAGTTTGCCTATTAAAGGTTCTGCTTCAGTGGTTGTGCTAGCACGCCCTGTGAGTAAATCTGAGGGTAGTTTTAGGAAGAAGCTGCAGTCATCCCTAGAAGCACAAATTCGTTTCTTAATTAAGAAGTGTAGAACACTCTCAGGTTCTGAAACTGGTCATGCTGGGTCTAGAAATGGCGGTGCTTCAAATTCTGCACCTCTGTTTTCACTTGATGCATCAAGGGCTGTTCTGTTGTTAGATAGGTATACAAATCAGAGAGGTGAGTCGCTTGAGTTTGCTACTGGCCTTGTTGAAGATGTTTTGAATGGGAAGGCAACCTCAGATTCTCTTTTGCTTGAAAGTCATGGTCAGAATGCAAGTAAAGAGGATATAATATCAGTGAAGGAGTTCATTTACAGGCAATCAGATATTCTAAGAGGGAGGGGGGGAGTTGTAACCAATTCCAATAGTGGTTCAGCTGCTGGTGTAGGTATGGCTGCTGTTGCTGCAGCCGTCGCTGCTGCGTCAGCAGCATCAGCTGCTGCATCAACTACGTCTGGAAAGACATTTAATGCTCCAGAACTTCCAACTCTCCAAATTTGGTTATCTTCCAGTCAACAAGTTCTTCATGGGGTTCTTTCAGCAAAAGGTGGCTGCATAGATGAAACTGAAATTAGTAAAAGAAAACCTCGGACGAGGAACACTATTCCACAGCCAGTTGAAGGAGTTTCTTCGAAAGGTATGGATCCCCTAGATTTAGCAGTATCTTGGTTGGAAAGTGGTAATAAAATGAACTCCAGATTTTCGACTTTGTGGTGTGAAAGGACCCTTCCAGCTGCCAAAGAGGTTTATCTGAAAGACTTGCCTGCTTGTTACCCAACTTCACAACATGAAGCTCATCTGGAGAAGGCTTTGCATGCTTTCCACTCAATGGTAAAAGGACATGCAGTGCAGCATTTTGCCAAAAAGTTGGAGGACGAGTGCACCTCCATCTGGAAATCTGGAAGGCAACTGTGTGATGCTGTTAGTTTGACTGGAAAACCATGTATGCACCAGAGACATAATGTTGATACTAATGAGTCACTCTCAGGAGCTACTGTGAAGCAACATTCCAGTGGATATGTTTTCCTTCATGCCTGTTCTTGTGGCCGTTCACGGAGATTACGATCTGATCCTTTTGACTTTGAATCAGCGAACATTACTTTTAGTTGCTTTCCGGACTGTGACAAGCTCCTCCCTACACTTCAATTACCTGAAGTAAGTAGTTCAGGGCCTATTCAATCTTCCTCATGGAGTTTGATTCGCATTGGGGGTGCAAGGTACTATGACCCTTATAAAGGCTTGCTTCAAAGCGGGTTCTGTTCAACTCAGAAGTTTCTTATGAAATGGACAATATCTATGGAGATACAGAATAGAGCAATCGATTTCACTGCCAAAGCAATGGATCAAGGTTCTGCAGTTAAGTCAGGTACGAACTTTAAGCTTGAATCTAAAGCTGATGTGCGGTTGCACTCGAAGGAGTTACAATCCAGAGTTGAAAGCCATAGAAAACCTGCAGAGGACATAGTATCTGATGATAATAAAATCAGTTTTGGTAAAGGTCTACCCAACTTTACCATGAGGAAACCTTTTTCTGAGGTTGTTGCTGGAACAGCAGCTGCAGATTCGGGATTTCCTCCTATCCAGCTGAGGAAAAAATCTGCATCCAGTTTAGATAAGAGTTTCAAGCAAATTAGGTCAAGGGATCAGAGCACAGAGCAGAATAGTGATAAAGGAACTCAAAAATCTAGAGATGATTTACCTGTTCAAGAAACAGTGAGTGGGATCAGTAGCACACATGTTGATCCTTATCTACGAATAGGTAGTAATGTGGTCCCTATGAACCTGAATGGCGTTGAAAGGTCCAAACCGGACCCTTCTTTTAAGCATGTAACAGTGTATGTTGGGTTTGAGCATGAGTGCCCGCATGGCCATCGTTTTCTATTAAATCCAGAGAATCTTAATGAGCTTGGGTCCTCATATCAGTTGCCTGAAGAATCTCAAGTGAAATCAGACCATATTCAGGCAGATTCTTCAAAACTAAGTAGGAATGGTTTCCATGGTAAAGCCCATCGAAATTCAAATAGGATCACTGCTACCGGCACAAATAGGGAGAGAAATGTAAATAAGTCAAAAGATATAGTAACTAATGGTGTCCTGAATTCAGATGGGATGATACAGTTCTCAGGACCAGGAAAGGAGCAGAATCATACTATTAGTGTATCAACAGTTGATAATTTTTCCAAACACAATGAAGGGAGCTTTCAGTCCATTAATATTGATGATGGTGGATGTGCTTTCTCCATGTTGAATAGAAATTTACCAATCTATATGAATTGCCCACACTGCAGGCTCTCTAAGAATAAGCAGGATCCTCCGAATACTAAGTTTTCGGGGACAGTATCACAGCTTCAACGGATTTTTATGGTTACACCTCCATTTCCAGTCATATTAGCTACTTGCCCAGTGATACAATTTGAGGCATCATGTCTACCTCCATCAATCCCAGAACGTGAGCAGGAGTTGCGGTTCAGCCTCGGATGCCAAGTGGTATTACCTCCAGAGAGTTTCCTTACTCTTAGACTCCCATTTGTGTATGGTGTAGAACTGGAGGATGGAAGTTTACATTCTCTAAACTGTTTTGAACATCAACCAGAGGTTACTGCCTGGATTACCAAAGGAACAGCATTACAGGTCATATCCAAAAGAAATAGTACTGGTCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1213

Amino Acids

132.06

Weight (kDa)

8.49

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Smg8_Smg9 PF10220 47 - 195 1.8e-13 Smg8_Smg9
Smg8_Smg9 PF10220 554 - 693 1.6e-34 Smg8_Smg9
Smg8_Smg9 PF10220 1072 - 1172 1.4e-06 Smg8_Smg9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2208
AasI GACNNNNNNGTC 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 2434
AccB7I CCANNNNNTGG 1 cut(s) 1804
AccI GTMKAC 3 cut(s) 1139, 2476, 3403
AccIII TCCGGA 1 cut(s) 2089
AcoI YGGCCR 2 cut(s) 2020, 2842
AcsI RAATTY 7 cut(s) 661, 999, 1081, 1470, 2989, 3073, 3229
AcuI CTGAAG 4 cut(s) 867, 903, 2148, 2925
AcyI GRCGYC 2 cut(s) 144, 258
AfaI GTAC 4 cut(s) 766, 2195, 2344, 3628
AfiI CCNNNNNNNGG 8 cut(s) 34, 677, 908, 1595, 1804, 1866, 2210, 2935
AflIII ACRYGT 2 cut(s) 222, 2710
AhdI GACNNNNNGTC 1 cut(s) 400
AjnI CCWGG 6 cut(s) 267, 447, 670, 754, 3103, 3578
AloI GAACNNNNNNTCC 2 cut(s) 3425, 3457
Alw21I GWGCWC 4 cut(s) 179, 432, 1859, 2627
Alw26I GTCTC 2 cut(s) 435, 1924
Alw44I GTGCAC 1 cut(s) 1855
AlwNI CAGNNNCTG 4 cut(s) 1040, 1355, 1415, 2531
Aor13HI TCCGGA 1 cut(s) 2089
AoxI GGCC 8 cut(s) 167, 189, 632, 890, 1177, 2020, 2144, 2842
ApaLI GTGCAC 1 cut(s) 1855
ApoI RAATTY 7 cut(s) 661, 999, 1081, 1470, 2989, 3073, 3229
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AseI ATTAAT 1 cut(s) 3186
Asp700I GAANNNNTTC 2 cut(s) 1280, 2966
AsuC2I CCSGG 4 cut(s) 35, 242, 281, 400
AsuHPI GGTGA 2 cut(s) 75, 1166
AsuII TTCGAA 3 cut(s) 423, 656, 1607
AsuNHI GCTAGC 1 cut(s) 931
AvaII GGWCC 8 cut(s) 4, 49, 1698, 2746, 2775, 2785, 2886, 3101
BaeGI GKGCMC 3 cut(s) 881, 1859, 2837
BalI TGGCCA 1 cut(s) 2844
BamHI GGATCC 3 cut(s) 207, 1618, 3283
BarI GAAGNNNNNNTAC 2 cut(s) 3306, 3338
Bbv12I GWGCWC 4 cut(s) 179, 432, 1859, 2627
BbvCI CCTCAGC 1 cut(s) 2561
BccI CCATC 8 cut(s) 613, 1871, 2853, 2991, 3074, 3191, 3418, 3521
BceAI ACGGC 4 cut(s) 157, 356, 1370, 2007
BcgI CGANNNNNNTGC 6 cut(s) 636, 670, 2285, 2319, 2828, 2862
BciT130I CCWGG 6 cut(s) 269, 449, 672, 756, 3105, 3580
BcnI CCSGG 4 cut(s) 35, 242, 281, 400
BcoDI GTCTC 2 cut(s) 435, 1924
BfaI CTAG 7 cut(s) 825, 870, 932, 989, 1062, 1625, 2661
BfmI CTRYAG 6 cut(s) 977, 1380, 2328, 2427, 2532, 3259
BfuAI ACCTGC 1 cut(s) 2434
BglI GCCNNNNNGGC 1 cut(s) 2841
BmcAI AGTACT 1 cut(s) 3628
Bme18I GGWCC 8 cut(s) 4, 49, 1698, 2746, 2775, 2785, 2886, 3101
BmeRI GACNNNNNGTC 1 cut(s) 400
BmrI ACTGGG 2 cut(s) 764, 3371
BmtI GCTAGC 1 cut(s) 935
BmuI ACTGGG 2 cut(s) 764, 3371
BplI GAGNNNNNCTC 4 cut(s) 1844, 1876, 1943, 1975
BpmI CTGGAG 8 cut(s) 431, 518, 654, 1434, 1654, 1796, 3456, 3542
Bpu10I CCTNAGC 1 cut(s) 2561
Bpu14I TTCGAA 3 cut(s) 423, 656, 1607
BpuEI CTTGAG 3 cut(s) 613, 1184, 2898
BpuMI CCSGG 4 cut(s) 35, 242, 281, 400
Bsa29I ATCGAT 1 cut(s) 2295
BsaBI GATNNNNATC 2 cut(s) 2038, 2721
BsaHI GRCGYC 2 cut(s) 144, 258
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 7 cut(s) 253, 372, 448, 564, 1562, 2971, 3448
BsaWI WCCGGW 2 cut(s) 2089, 2782
Bsc4I CCNNNNNNNGG 8 cut(s) 34, 677, 908, 1595, 1804, 1866, 2210, 2935
Bse118I RCCGGY 1 cut(s) 3011
Bse3DI GCAATG 2 cut(s) 706, 2319
Bse8I GATNNNNATC 2 cut(s) 2038, 2721
BseAI TCCGGA 1 cut(s) 2089
BseBI CCWGG 6 cut(s) 269, 449, 672, 756, 3105, 3580
BseCI ATCGAT 1 cut(s) 2295
BseDI CCNNGG 7 cut(s) 253, 372, 448, 564, 1562, 2971, 3448
BseJI GATNNNNATC 2 cut(s) 2038, 2721
BseLI CCNNNNNNNGG 8 cut(s) 34, 677, 908, 1595, 1804, 1866, 2210, 2935
BseMI GCAATG 2 cut(s) 706, 2319
BseMII CTCAG 9 cut(s) 135, 945, 1047, 1227, 1974, 2255, 2499, 2552, 3111
BseRI GAGGAG 5 cut(s) 103, 106, 109, 335, 2096
BseSI GKGCMC 3 cut(s) 881, 1859, 2837
BseYI CCCAGC 3 cut(s) 192, 818, 1055
BsgI GTGCAG 2 cut(s) 1071, 1844
BshFI GGCC 8 cut(s) 169, 191, 634, 892, 1179, 2022, 2146, 2844
BshVI ATCGAT 1 cut(s) 2295
BsiHKAI GWGCWC 4 cut(s) 179, 432, 1859, 2627
BsiSI CCGG 7 cut(s) 35, 241, 280, 399, 2090, 2783, 3012
BslFI GGGAC 4 cut(s) 257, 296, 2732, 3322
BslI CCNNNNNNNGG 8 cut(s) 34, 677, 908, 1595, 1804, 1866, 2210, 2935
BsmAI GTCTC 2 cut(s) 435, 1924
BsmFI GGGAC 4 cut(s) 257, 296, 2732, 3322
BsmI GAATGC 1 cut(s) 1252
BsnI GGCC 8 cut(s) 169, 191, 634, 892, 1179, 2022, 2146, 2844
Bso31I GGTCTC 1 cut(s) 435
Bsp119I TTCGAA 3 cut(s) 423, 656, 1607
Bsp1286I GDGCHC 6 cut(s) 179, 432, 881, 1859, 2627, 2837
Bsp13I TCCGGA 1 cut(s) 2089
Bsp19I CCATGG 1 cut(s) 2971
BspANI GGCC 8 cut(s) 169, 191, 634, 892, 1179, 2022, 2146, 2844
BspCNI CTCAG 9 cut(s) 134, 946, 1046, 1226, 1973, 2254, 2500, 2553, 3110
BspDI ATCGAT 1 cut(s) 2295
BspEI TCCGGA 1 cut(s) 2089
BspMAI CTGCAG 6 cut(s) 981, 1384, 2332, 2431, 2536, 3263
BspMI ACCTGC 1 cut(s) 2434
BspOI GCTAGC 1 cut(s) 935
BspQI GCTCTTC 1 cut(s) 420
BspT104I TTCGAA 3 cut(s) 423, 656, 1607
BspTNI GGTCTC 1 cut(s) 435
BsrDI GCAATG 2 cut(s) 706, 2319
BsrFI RCCGGY 1 cut(s) 3011
BssAI RCCGGY 1 cut(s) 3011
BssECI CCNNGG 7 cut(s) 253, 372, 448, 564, 1562, 2971, 3448
BssNAI GTATAC 1 cut(s) 1140
BssNI GRCGYC 2 cut(s) 144, 258
BssT1I CCWWGG 2 cut(s) 564, 2971
Bst1107I GTATAC 1 cut(s) 1140
Bst2UI CCWGG 6 cut(s) 269, 449, 672, 756, 3105, 3580
Bst6I CTCTTC 2 cut(s) 420, 658
BstACI GRCGYC 2 cut(s) 144, 258
BstAPI GCANNNNNTGC 2 cut(s) 1412, 3436
BstBI TTCGAA 3 cut(s) 423, 656, 1607
BstC8I GCNNGC 8 cut(s) 561, 933, 937, 1740, 1791, 2216, 2837, 3263
BstDSI CCRYGG 2 cut(s) 372, 2971
BstENI CCTNNNNNAGG 2 cut(s) 906, 2208
BstMAI GTCTC 2 cut(s) 435, 1924
BstNI CCWGG 6 cut(s) 269, 449, 672, 756, 3105, 3580
BstNSI RCATGY 6 cut(s) 563, 691, 1793, 1820, 2714, 2804
BstSFI CTRYAG 6 cut(s) 977, 1380, 2328, 2427, 2532, 3259
BstSLI GKGCMC 3 cut(s) 881, 1859, 2837
BstX2I RGATCY 3 cut(s) 207, 1618, 3283
BstXI CCANNNNNNTGG 2 cut(s) 1843, 2314
BstYI RGATCY 3 cut(s) 207, 1618, 3283
BstZ17I GTATAC 1 cut(s) 1140
Bsu15I ATCGAT 1 cut(s) 2295
BsuRI GGCC 8 cut(s) 169, 191, 634, 892, 1179, 2022, 2146, 2844
BsuTUI ATCGAT 1 cut(s) 2295
BtgI CCRYGG 2 cut(s) 372, 2971
BtsI GCAGTG 4 cut(s) 1827, 2301, 3003, 3256
BveI ACCTGC 1 cut(s) 2434
Cac8I GCNNGC 8 cut(s) 561, 933, 937, 1740, 1791, 2216, 2837, 3263
CaiI CAGNNNCTG 4 cut(s) 1040, 1355, 1415, 2531
Cfr10I RCCGGY 1 cut(s) 3011
ClaI ATCGAT 1 cut(s) 2295
CseI GACGC 3 cut(s) 133, 247, 1386
Csp6I GTAC 4 cut(s) 765, 2194, 2343, 3627
CviQI GTAC 4 cut(s) 765, 2194, 2343, 3627
DrdI GACNNNNNNGTC 1 cut(s) 146
DriI GACNNNNNGTC 1 cut(s) 400
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 2 cut(s) 2020, 2842
Eam1104I CTCTTC 2 cut(s) 420, 658
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 2 cut(s) 420, 658
EciI GGCGGA 3 cut(s) 47, 313, 358
Eco130I CCWWGG 2 cut(s) 564, 2971
Eco147I AGGCCT 1 cut(s) 634
Eco31I GGTCTC 1 cut(s) 435
Eco47I GGWCC 8 cut(s) 4, 49, 1698, 2746, 2775, 2785, 2886, 3101
Eco57I CTGAAG 4 cut(s) 867, 903, 2148, 2925
EcoNI CCTNNNNNAGG 2 cut(s) 906, 2208
EcoO109I RGGNCCY 4 cut(s) 49, 1698, 2144, 2886
EcoRI GAATTC 1 cut(s) 3073
EcoRII CCWGG 6 cut(s) 267, 447, 670, 754, 3103, 3578
EcoT14I CCWWGG 2 cut(s) 564, 2971
EcoT22I ATGCAT 1 cut(s) 1111
ErhI CCWWGG 2 cut(s) 564, 2971
FalI AAGNNNNNCTT 4 cut(s) 548, 580, 2202, 2234
FaqI GGGAC 4 cut(s) 257, 296, 2732, 3322
FauI CCCGC 3 cut(s) 39, 2219, 2844
FblI GTMKAC 3 cut(s) 1139, 2476, 3403
FspBI CTAG 7 cut(s) 825, 870, 932, 989, 1062, 1625, 2661
GsaI CCCAGC 3 cut(s) 196, 822, 1059
GsuI CTGGAG 8 cut(s) 431, 518, 654, 1434, 1654, 1796, 3456, 3542
HaeIII GGCC 8 cut(s) 169, 191, 634, 892, 1179, 2022, 2146, 2844
HapII CCGG 7 cut(s) 35, 241, 280, 399, 2090, 2783, 3012
HgaI GACGC 3 cut(s) 133, 247, 1386
Hin1I GRCGYC 2 cut(s) 144, 258
HincII GTYRAC 2 cut(s) 693, 1490
HindII GTYRAC 2 cut(s) 693, 1490
HindIII AAGCTT 1 cut(s) 2354
HpaII CCGG 7 cut(s) 35, 241, 280, 399, 2090, 2783, 3012
HphI GGTGA 2 cut(s) 75, 1166
Hpy99I CGWCG 5 cut(s) 143, 149, 152, 263, 1391
HpyCH4IV ACGT 3 cut(s) 222, 1427, 3424
HpySE526I ACGT 3 cut(s) 222, 1427, 3424
Hsp92I GRCGYC 2 cut(s) 144, 258
Kpn2I TCCGGA 1 cut(s) 2089
LguI GCTCTTC 1 cut(s) 420
MaeI CTAG 7 cut(s) 825, 870, 932, 989, 1062, 1625, 2661
MaeII ACGT 3 cut(s) 222, 1427, 3424
MflI RGATCY 3 cut(s) 207, 1618, 3283
MhlI GDGCHC 6 cut(s) 179, 432, 881, 1859, 2627, 2837
MlsI TGGCCA 1 cut(s) 2844
MluNI TGGCCA 1 cut(s) 2844
MlyI GAGTC 8 cut(s) 209, 389, 407, 688, 830, 1166, 1961, 3489
MmeI TCCRAC 4 cut(s) 243, 1484, 1626, 1824
Mox20I TGGCCA 1 cut(s) 2844
Mph1103I ATGCAT 1 cut(s) 1111
MroI TCCGGA 1 cut(s) 2089
MroXI GAANNNNTTC 2 cut(s) 1280, 2966
MscI TGGCCA 1 cut(s) 2844
MslI CAYNNNNRTG 1 cut(s) 1986
Msp20I TGGCCA 1 cut(s) 2844
MspA1I CMGCKG 5 cut(s) 1352, 1412, 1709, 2531, 2560
MspI CCGG 7 cut(s) 35, 241, 280, 399, 2090, 2783, 3012
Mva1269I GAATGC 1 cut(s) 1252
MvaI CCWGG 6 cut(s) 269, 449, 672, 756, 3105, 3580
NciI CCSGG 4 cut(s) 35, 242, 281, 400
NcoI CCATGG 1 cut(s) 2971
NheI GCTAGC 1 cut(s) 931
NmeAIII GCCGAG 4 cut(s) 167, 198, 234, 818
NmuCI GTSAC 3 cut(s) 772, 1953, 2096
NsiI ATGCAT 1 cut(s) 1111
NspI RCATGY 6 cut(s) 563, 691, 1793, 1820, 2714, 2804
NspV TTCGAA 3 cut(s) 423, 656, 1607
PacI TTAATTAA 1 cut(s) 1014
PaeI GCATGC 2 cut(s) 563, 1793
PceI AGGCCT 1 cut(s) 634
PciI ACATGT 1 cut(s) 2710
PciSI GCTCTTC 1 cut(s) 420
PcsI WCGNNNNNNNCGW 4 cut(s) 147, 219, 429, 2035
PctI GAATGC 1 cut(s) 1252
PdmI GAANNNNTTC 2 cut(s) 1280, 2966
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 1804
PfoI TCCNGGA 2 cut(s) 279, 754
PleI GAGTC 8 cut(s) 209, 389, 407, 688, 830, 1165, 1960, 3489
PpsI GAGTC 8 cut(s) 209, 389, 407, 688, 830, 1165, 1960, 3489
PpuMI RGGWCCY 3 cut(s) 49, 1698, 2886
PscI ACATGT 1 cut(s) 2710
PshBI ATTAAT 1 cut(s) 3186
PsiI TTATAA 1 cut(s) 2208
Psp5II RGGWCCY 3 cut(s) 49, 1698, 2886
Psp6I CCWGG 6 cut(s) 267, 447, 670, 754, 3103, 3578
PspFI CCCAGC 3 cut(s) 192, 818, 1055
PspGI CCWGG 6 cut(s) 267, 447, 670, 754, 3103, 3578
PspPPI RGGWCCY 3 cut(s) 49, 1698, 2886
PstI CTGCAG 6 cut(s) 981, 1384, 2332, 2431, 2536, 3263
PstNI CAGNNNCTG 4 cut(s) 1040, 1355, 1415, 2531
PsuI RGATCY 3 cut(s) 207, 1618, 3283
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 5 cut(s) 1352, 1412, 1709, 2531, 2560
RsaI GTAC 4 cut(s) 766, 2195, 2344, 3628
RsaNI GTAC 4 cut(s) 765, 2194, 2343, 3627
RseI CAYNNNNRTG 1 cut(s) 1986
SapI GCTCTTC 1 cut(s) 420
ScaI AGTACT 1 cut(s) 3628
SchI GAGTC 8 cut(s) 209, 389, 407, 688, 830, 1166, 1961, 3489
SduI GDGCHC 6 cut(s) 179, 432, 881, 1859, 2627, 2837
SfcI CTRYAG 6 cut(s) 977, 1380, 2328, 2427, 2532, 3259
SfuI TTCGAA 3 cut(s) 423, 656, 1607
SinI GGWCC 8 cut(s) 4, 49, 1698, 2746, 2775, 2785, 2886, 3101
SmiMI CAYNNNNRTG 1 cut(s) 1986
SmlI CTYRAG 3 cut(s) 628, 1163, 2913
SmoI CTYRAG 3 cut(s) 628, 1163, 2913
SphI GCATGC 2 cut(s) 563, 1793
SseBI AGGCCT 1 cut(s) 634
SspI AATATT 1 cut(s) 3190
SspMI CTAG 7 cut(s) 825, 870, 932, 989, 1062, 1625, 2661
StuI AGGCCT 1 cut(s) 634
StyI CCWWGG 2 cut(s) 564, 2971
TaiI ACGT 3 cut(s) 225, 1430, 3427
TatI WGTACW 1 cut(s) 3626
TauI GCSGC 1 cut(s) 172
TseFI GTSAC 3 cut(s) 772, 1953, 2096
Tsp45I GTSAC 3 cut(s) 772, 1953, 2096
TspGWI ACGGA 2 cut(s) 2044, 3343
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 1804
VneI GTGCAC 1 cut(s) 1855
VpaK11BI GGWCC 8 cut(s) 4, 49, 1698, 2746, 2775, 2785, 2886, 3101
VspI ATTAAT 1 cut(s) 3186
XagI CCTNNNNNAGG 2 cut(s) 906, 2208
XapI RAATTY 7 cut(s) 661, 999, 1081, 1470, 2989, 3073, 3229
XbaI TCTAGA 2 cut(s) 1061, 2660
XceI RCATGY 6 cut(s) 563, 691, 1793, 1820, 2714, 2804
XcmI CCANNNNNNNNNTGG 2 cut(s) 562, 826
XmiI GTMKAC 3 cut(s) 1139, 2476, 3403
XmnI GAANNNNTTC 2 cut(s) 1280, 2966
XspI CTAG 7 cut(s) 825, 870, 932, 989, 1062, 1625, 2661
ZrmI AGTACT 1 cut(s) 3628
Zsp2I ATGCAT 1 cut(s) 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.