Rw5G035030

Smg8_Smg9

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
60503177 .. 60508450
5274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035030.1

Sequence Viewer

Length: 3609 bp
ATGGACCCACCGAACCCGAGCCCGGCATCTATGCGGGTCCTAATCCGCCCACCCCCTTCTTCCCAAACCATTCCGATTCCCTCCTCCTCCTCCTCAGACCCTCTCTCTACCGACGGCGTCGTCGTCGTGGGCTTCATTGGGCCGCCGAGCACCGACCACTCGGCCGAGCTCATCAATCGGATCCTCGACTCCAACGTGTTCGGGTCGGGCAACCGGGATAAAACCCTCGGCGTCGAGAACCAGGAGGAGCTCCGGGACTGGTTGAAGTGGCGGAGAATCAGTTACTACCATGAGGAGCAGAAGGGGATTCTGTTCTTGCAGTTTTGCTCCACACTCTGCTCCGCCGTGGACGGCGGGTTATCGGATTCCGGGTCGGGTTTCGACTCTGTGTTCGAAGAGCACGACTTTGGAGACCTTCAGGGGATGCTTTTCATGTTCTCTGTAAGTTTGCCATGTAATTTTATATATATATATATATATATATATATATATATTCTGGAGGGTTCACGGTTTGATACTCAAACTACTGAAAAAGTTTCGAGTGTTACAAGATGCCAAGCATGCGTTGGCTCCATTAGTCAGACCCCGAAATGCTGCATATCCAAGCCCTATTCGTCATCCTCAAGGCCTACCACATCTGCAACCTCTTCAAAAAATTCTTCTCCAGGTAGAGGTGGTGGCATGTTGACTCGCAATGCTTCTGCCATTTCGCTAATGTCAGGTTTAGGTTCCTACACTTCTTTGTTTCCTGGACAGTGTACCCCAGTCACACTGTTTGTTTTCATTGATGATTTCTCTGATGTGCCAAATCCCAGCTCTAGTGTGGAGGACTCGGCAGATACATCCTCACTAAATCAGCCTTCTAGTTTGGGCACTTCAGCAAGGCCAAGTTTGCCTATTAAAGGTTCTGCTTCAGTGGTTGTGCTAGCACGCCCTGTGAGTAAATCTGAGGGTAGTTTTAGGAAGAAGCTGCAGGCATCCCTAGAAGCACAAATTCGTTTCTTAATTAAGAAGTGTAGAACACTCTCAGGTTCTGAAACTGGTCATGCTGGGTCTAGAAATGGCGGTGCTTCAAATTCTGCACCTCTGTTTTCACTTGATGCATCAAGGGCTGTTCTGTTGTTAGATAGGTATACAAATCAGAGAGGTGAGTCGCTTGAGTTTGCTACTGGCCTTGTTGAAGATGTTTTGAATGGGAAGGCAACCTCAGATTCTCTTTTGCTTGAAAGTCATGGTCAGAATGCAAGTAAAGAGGATATAATATCAGTGAAGGAGTTCATTTACAGGCAATCAGATATTCTAAGAGGGAGGGGGGGAGTTGTAACCAATTCCAATAGTGGTTCAGCTGCTGGTGTAGGTATGGCTGCTGTTGCTGCAGCCGTCGCTGCTGCGTCAGCAGCATTAGCTGCTGCATCAACTACGTCTGGAAAGACATTTAATGCTCCAGAACTTCCAACTCTCCAAATTTGGTTATCTTCCAGTCAACAAATTCTTCATGGGGTTCTTTCAGCAAAAGGTGGCTGCATAGATGAAACTGAAATTAGTAAAAGAAAACCTCGGACGAGGAACAGTATTCCACAGCCAGTTGAAGGAGTTTCTTCTAAAGTTATGGATCCCCTAGATTTAGCAGTATCTTGGTTGGAAAGTGGTAATAAAATGAACTCCAGATTTTTGACTTTGTGGTGTGAAAGGACCCTTCCAGCTGCCAAAGAGGTTTATCTGAAAGACTTGCCTGCTTGTTACCCAACTTCACAACATGAAGCTCATCTGGAGAAGGCTTTGCATGCTTTCCACTCAATGGTAAAAGGACATGCAGTGCAGCATTTTGCCAAAAAGTTGGAGGACGAGTGCACCTCCATCTGGAAATCTGGAAGGCAACTGTGTGATGCTGTTAGTTTGACTGGAAAACCATGTATGCACCAGAGACATAATGTTGACACTAATGAGTCACTCTCAGGAGCTACTGTGAAGCAACATTCCAGTGGATATGTTTTCCTTCATGCCTGTTCTTGTGGCCGTTCACGGAGATTACGATCTGATCCTTTTGACTTTGAATCAGCGAACACTACGTTTAGTTGCTTTCCGGACTGTGACAAGCTCCTCCCTACACTTCAATTACCTGAAGTAAGTAGTTCAGGGCCTATTCAATCTTCCTCATGGAGTTTGATTCGCATTGGGGGTGCAAGGTACTATGACCCTTATAAAGGCTTGCTTCAAAGCGGGTTCTGTTCAACTCAGAAGTTTCTTTTGAAATGGACAATATCTATGGAGATACAGAATAGAGCAATCGATTTCACTGCCAAAGCAATGGATCAAGGTTCTGCAGTTAAGTCAGGTGCGAACTTTAAGCTTGAATCTAAAGCTGATGTGCGGTTGCACTCGAAGGAGTTACAATCCAGAGTTGAAAGCCATAGAAAACCTGCAGAGGACATAGTATCTGATGATAATAAAATCAGTTTTGGTAAAGGTCTACCCAACTTTACCATGAGGAAACCTTTTTCTGAGGTTGTTGCTGGAACAGCAGCTGCAGATTCAGGATTTCCTCCTATCGAGCTGAGGAAAAAATCTGCATCCAGTTTAGATAAGAGTTTCAAGCAAATTAGGTCAAGGGATCAGAGTACAGAGCAGAATAGTGATAAAGGAACTCAAAAATCTAGAGATGATTTACCTGTGAGTGGGATCAGTAGCACACATGTTGATCCTTATCTACGAATAGGTAGTAATGTGGTCCCTATGAACCTGAATGGCGTTGAAAGGTCCAAACCGGACCCTTCTTTTAAGCATGTAACAGTGTATGTTGGGTTTGAGCATGAGTGCCCGCATGGCCATCGTTTTCTATTAAATCCAGAGAATCTTAATGAGCTTGGGTCCTCATATCAGTTGCTTGAAGAATCTCAAGTGAAATCAGACCATATTCAGGCAGATTCTTCAAAACTAAGTAGGAATGGTTTCCATGGTAAAGCCCATCAAAATTCAAATAGGATCACTGCTACCGGCACAAATAGGGAGAGAAATGTAAATAAGTCAAAAGATATAGTAACTAATGGTGTCCTGAATTCAGATGGGATGATACAGTTCTCAGGACCGGGAAAGGAGCAGAATCATACTATTAGTGTATCAACAGTTGCTAATTTTTCCAAACACGATGAAGGGAGCTTTCAGTCCATTAATATTGATGATGGTGGATGTGCTTTCTCCATGTTGAATAGAAATTTACCAATCTATATGAATTGCCCACACTGCAGGCTCTCTAAGAATAAGCAGGATCCTCCGAATACTAAGTTTTCGGGGACAGTATCACAGCTTCAACGGATTTTTATGGTTACACCTCCATTTCCAGTCATATTAGCTACTTGCCCAGTTATACAATTTGAGTTATCAATCCCAGAACGTGAGCAGGAGTTGCGGTTCAGCCTCGGATGCCAAGTGGTATTACCTCCAGAGAGTTTCCTTACTCTTAGACTCCCATTTGTGTATGGTGTAGAACTGGAGGATGGAAGTTTACATTCTCTAAACTGTTTTGAACATCAACCAGAGGTTACTGCCTGGATTACCAAAGGAACAGCATTACAGGTCATATCCAAAAGAAATAGTACTGGTCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1202

Amino Acids

130.81

Weight (kDa)

7.88

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Smg8_Smg9 PF10220 552 - 691 4.5e-34 Smg8_Smg9
Smg8_Smg9 PF10220 1066 - 1161 8.7e-08 Smg8_Smg9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2202
AasI GACNNNNNNGTC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 2428
AccB7I CCANNNNNTGG 1 cut(s) 1798
AccI GTMKAC 2 cut(s) 1133, 2470
AccIII TCCGGA 1 cut(s) 2083
AcoI YGGCCR 3 cut(s) 162, 2014, 2824
AcsI RAATTY 8 cut(s) 655, 993, 1075, 1464, 1488, 2971, 3055, 3211
AcuI CTGAAG 4 cut(s) 401, 861, 897, 2142
AcyI GRCGYC 2 cut(s) 117, 231
AfaI GTAC 4 cut(s) 760, 2189, 2620, 3595
AfiI CCNNNNNNNGG 9 cut(s) 22, 671, 902, 1589, 1798, 1860, 2204, 2675, 2917
AflIII ACRYGT 2 cut(s) 195, 2692
AjnI CCWGG 4 cut(s) 240, 664, 748, 3545
AloI GAACNNNNNNTCC 2 cut(s) 3392, 3424
Alw21I GWGCWC 5 cut(s) 152, 171, 252, 402, 1853
Alw26I GTCTC 2 cut(s) 405, 1918
Alw44I GTGCAC 1 cut(s) 1849
AlwNI CAGNNNCTG 3 cut(s) 1034, 1349, 2525
Ama87I CYCGRG 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 2083
AoxI GGCC 8 cut(s) 140, 162, 626, 884, 1171, 2014, 2138, 2824
ApaLI GTGCAC 1 cut(s) 1849
ApoI RAATTY 8 cut(s) 655, 993, 1075, 1464, 1488, 2971, 3055, 3211
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
AseI ATTAAT 1 cut(s) 3168
Asp700I GAANNNNTTC 2 cut(s) 1274, 2948
AsuC2I CCSGG 5 cut(s) 23, 215, 254, 370, 3087
AsuHPI GGTGA 1 cut(s) 1160
AsuII TTCGAA 1 cut(s) 393
AsuNHI GCTAGC 1 cut(s) 925
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 8 cut(s) 4, 37, 1692, 2728, 2757, 2767, 2868, 3083
BaeGI GKGCMC 3 cut(s) 875, 1853, 2819
BalI TGGCCA 1 cut(s) 2826
BamHI GGATCC 3 cut(s) 180, 1612, 3265
BanII GRGCYC 3 cut(s) 23, 171, 252
BarI GAAGNNNNNNTAC 2 cut(s) 3288, 3320
Bbv12I GWGCWC 5 cut(s) 152, 171, 252, 402, 1853
BbvCI CCTCAGC 1 cut(s) 2555
BccI CCATC 6 cut(s) 1865, 2835, 2973, 3056, 3173, 3488
BceAI ACGGC 5 cut(s) 130, 329, 367, 1364, 2001
BcgI CGANNNNNNTGC 4 cut(s) 2279, 2313, 2810, 2844
BciT130I CCWGG 4 cut(s) 242, 666, 750, 3547
BcnI CCSGG 5 cut(s) 23, 215, 254, 370, 3087
BcoDI GTCTC 2 cut(s) 405, 1918
BfaI CTAG 7 cut(s) 819, 864, 926, 983, 1056, 1619, 2655
BfmI CTRYAG 6 cut(s) 971, 1374, 2322, 2421, 2526, 3241
BfuAI ACCTGC 1 cut(s) 2428
BglI GCCNNNNNGGC 1 cut(s) 2823
BmcAI AGTACT 1 cut(s) 3595
Bme1390I CCNGG 9 cut(s) 23, 215, 242, 254, 370, 666, 750, 3087, 3547
Bme18I GGWCC 8 cut(s) 4, 37, 1692, 2728, 2757, 2767, 2868, 3083
BmeT110I CYCGRG 1 cut(s) 16
BmrFI CCNGG 9 cut(s) 23, 215, 242, 254, 370, 666, 750, 3087, 3547
BmrI ACTGGG 2 cut(s) 758, 3353
BmtI GCTAGC 1 cut(s) 929
BmuI ACTGGG 2 cut(s) 758, 3353
BplI GAGNNNNNCTC 4 cut(s) 1838, 1870, 1937, 1969
BpmI CTGGAG 7 cut(s) 518, 648, 1428, 1648, 1790, 3423, 3509
Bpu10I CCTNAGC 1 cut(s) 2555
Bpu14I TTCGAA 1 cut(s) 393
BpuEI CTTGAG 3 cut(s) 607, 1178, 2880
BpuMI CCSGG 5 cut(s) 23, 215, 254, 370, 3087
Bsa29I ATCGAT 1 cut(s) 2289
BsaBI GATNNNNATC 2 cut(s) 2032, 2703
BsaHI GRCGYC 2 cut(s) 117, 231
BsaI GGTCTC 1 cut(s) 405
BsaJI CCNNGG 5 cut(s) 226, 345, 1556, 2953, 3415
BsaWI WCCGGW 2 cut(s) 2083, 2764
BsaXI ACNNNNNCTCC 8 cut(s) 265, 295, 1832, 1862, 1950, 1980, 3392, 3422
Bsc4I CCNNNNNNNGG 9 cut(s) 22, 671, 902, 1589, 1798, 1860, 2204, 2675, 2917
Bse118I RCCGGY 1 cut(s) 2993
Bse3DI GCAATG 2 cut(s) 700, 2313
Bse8I GATNNNNATC 2 cut(s) 2032, 2703
BseAI TCCGGA 1 cut(s) 2083
BseBI CCWGG 4 cut(s) 242, 666, 750, 3547
BseCI ATCGAT 1 cut(s) 2289
BseDI CCNNGG 5 cut(s) 226, 345, 1556, 2953, 3415
BseGI GGATG 9 cut(s) 429, 617, 842, 977, 2570, 3072, 3191, 3425, 3499
BseJI GATNNNNATC 2 cut(s) 2032, 2703
BseLI CCNNNNNNNGG 9 cut(s) 22, 671, 902, 1589, 1798, 1860, 2204, 2675, 2917
BseMI GCAATG 2 cut(s) 700, 2313
BseMII CTCAG 9 cut(s) 108, 939, 1041, 1221, 1968, 2249, 2493, 2546, 3093
BseRI GAGGAG 7 cut(s) 73, 76, 79, 82, 260, 308, 2090
BseSI GKGCMC 3 cut(s) 875, 1853, 2819
BseX3I CGGCCG 1 cut(s) 162
BseYI CCCAGC 2 cut(s) 812, 1049
BsgI GTGCAG 2 cut(s) 1065, 1838
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 8 cut(s) 142, 164, 628, 886, 1173, 2016, 2140, 2826
BshVI ATCGAT 1 cut(s) 2289
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 5 cut(s) 152, 171, 252, 402, 1853
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 8 cut(s) 23, 214, 253, 369, 2084, 2765, 2994, 3086
BslFI GGGAC 3 cut(s) 269, 2714, 3304
BslI CCNNNNNNNGG 9 cut(s) 22, 671, 902, 1589, 1798, 1860, 2204, 2675, 2917
BsmAI GTCTC 2 cut(s) 405, 1918
BsmFI GGGAC 3 cut(s) 269, 2714, 3304
BsmI GAATGC 1 cut(s) 1246
BsnI GGCC 8 cut(s) 142, 164, 628, 886, 1173, 2016, 2140, 2826
Bso31I GGTCTC 1 cut(s) 405
BsoBI CYCGRG 1 cut(s) 16
Bsp119I TTCGAA 1 cut(s) 393
Bsp1286I GDGCHC 8 cut(s) 23, 152, 171, 252, 402, 875, 1853, 2819
Bsp13I TCCGGA 1 cut(s) 2083
Bsp19I CCATGG 1 cut(s) 2953
BspANI GGCC 8 cut(s) 142, 164, 628, 886, 1173, 2016, 2140, 2826
BspCNI CTCAG 9 cut(s) 107, 940, 1040, 1220, 1967, 2248, 2494, 2547, 3092
BspDI ATCGAT 1 cut(s) 2289
BspEI TCCGGA 1 cut(s) 2083
BspMAI CTGCAG 6 cut(s) 975, 1378, 2326, 2425, 2530, 3245
BspMI ACCTGC 1 cut(s) 2428
BspOI GCTAGC 1 cut(s) 929
BspQI GCTCTTC 1 cut(s) 390
BspT104I TTCGAA 1 cut(s) 393
BspTNI GGTCTC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 700, 2313
BsrFI RCCGGY 1 cut(s) 2993
BssAI RCCGGY 1 cut(s) 2993
BssECI CCNNGG 5 cut(s) 226, 345, 1556, 2953, 3415
BssNAI GTATAC 1 cut(s) 1134
BssNI GRCGYC 2 cut(s) 117, 231
BssT1I CCWWGG 1 cut(s) 2953
Bst1107I GTATAC 1 cut(s) 1134
Bst2UI CCWGG 4 cut(s) 242, 666, 750, 3547
Bst6I CTCTTC 2 cut(s) 390, 652
BstACI GRCGYC 2 cut(s) 117, 231
BstAPI GCANNNNNTGC 2 cut(s) 1406, 3403
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 9 cut(s) 562, 927, 931, 975, 1734, 1785, 2210, 2819, 3245
BstDSI CCRYGG 2 cut(s) 345, 2953
BstENI CCTNNNNNAGG 2 cut(s) 900, 2202
BstF5I GGATG 9 cut(s) 429, 617, 842, 977, 2570, 3072, 3191, 3425, 3499
BstMAI GTCTC 2 cut(s) 405, 1918
BstMCI CGRYCG 1 cut(s) 165
BstNI CCWGG 4 cut(s) 242, 666, 750, 3547
BstNSI RCATGY 6 cut(s) 564, 685, 1787, 1814, 2696, 2786
BstSCI CCNGG 9 cut(s) 21, 213, 240, 252, 368, 664, 748, 3085, 3545
BstSFI CTRYAG 6 cut(s) 971, 1374, 2322, 2421, 2526, 3241
BstSLI GKGCMC 3 cut(s) 875, 1853, 2819
BstX2I RGATCY 3 cut(s) 180, 1612, 3265
BstXI CCANNNNNNTGG 2 cut(s) 1837, 2308
BstYI RGATCY 3 cut(s) 180, 1612, 3265
BstZ17I GTATAC 1 cut(s) 1134
BstZI CGGCCG 1 cut(s) 162
Bsu15I ATCGAT 1 cut(s) 2289
BsuRI GGCC 8 cut(s) 142, 164, 628, 886, 1173, 2016, 2140, 2826
BsuTUI ATCGAT 1 cut(s) 2289
BtgI CCRYGG 2 cut(s) 345, 2953
BtsCI GGATG 9 cut(s) 429, 617, 842, 977, 2570, 3072, 3191, 3425, 3499
BtsI GCAGTG 4 cut(s) 1821, 2295, 2985, 3238
BveI ACCTGC 1 cut(s) 2428
Cac8I GCNNGC 9 cut(s) 562, 927, 931, 975, 1734, 1785, 2210, 2819, 3245
CaiI CAGNNNCTG 3 cut(s) 1034, 1349, 2525
Cfr10I RCCGGY 1 cut(s) 2993
ClaI ATCGAT 1 cut(s) 2289
CseI GACGC 3 cut(s) 106, 220, 1380
Csp6I GTAC 4 cut(s) 759, 2188, 2619, 3594
CviQI GTAC 4 cut(s) 759, 2188, 2619, 3594
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 3 cut(s) 162, 2014, 2824
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 390, 652
EarI CTCTTC 2 cut(s) 390, 652
EciI GGCGGA 3 cut(s) 35, 286, 331
Ecl136II GAGCTC 2 cut(s) 169, 250
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 2953
Eco147I AGGCCT 1 cut(s) 628
Eco24I GRGCYC 3 cut(s) 23, 171, 252
Eco31I GGTCTC 1 cut(s) 405
Eco47I GGWCC 8 cut(s) 4, 37, 1692, 2728, 2757, 2767, 2868, 3083
Eco52I CGGCCG 1 cut(s) 162
Eco53kI GAGCTC 2 cut(s) 169, 250
Eco57I CTGAAG 4 cut(s) 401, 861, 897, 2142
Eco88I CYCGRG 1 cut(s) 16
EcoICRI GAGCTC 2 cut(s) 169, 250
EcoNI CCTNNNNNAGG 2 cut(s) 900, 2202
EcoO109I RGGNCCY 4 cut(s) 37, 1692, 2138, 2868
EcoRI GAATTC 1 cut(s) 3055
EcoRII CCWGG 4 cut(s) 240, 664, 748, 3545
EcoT14I CCWWGG 1 cut(s) 2953
EcoT22I ATGCAT 1 cut(s) 1105
EcoT38I GRGCYC 3 cut(s) 23, 171, 252
ErhI CCWWGG 1 cut(s) 2953
FalI AAGNNNNNCTT 2 cut(s) 2196, 2228
FaqI GGGAC 3 cut(s) 269, 2714, 3304
FauI CCCGC 4 cut(s) 27, 347, 2213, 2826
FblI GTMKAC 2 cut(s) 1133, 2470
FokI GGATG 9 cut(s) 436, 604, 829, 964, 2557, 3079, 3198, 3432, 3506
FriOI GRGCYC 3 cut(s) 23, 171, 252
FspBI CTAG 7 cut(s) 819, 864, 926, 983, 1056, 1619, 2655
GsaI CCCAGC 2 cut(s) 816, 1053
GsuI CTGGAG 7 cut(s) 518, 648, 1428, 1648, 1790, 3423, 3509
HaeIII GGCC 8 cut(s) 142, 164, 628, 886, 1173, 2016, 2140, 2826
HapII CCGG 8 cut(s) 23, 214, 253, 369, 2084, 2765, 2994, 3086
HgaI GACGC 3 cut(s) 106, 220, 1380
Hin1I GRCGYC 2 cut(s) 117, 231
HincII GTYRAC 3 cut(s) 687, 1484, 1936
HindII GTYRAC 3 cut(s) 687, 1484, 1936
HindIII AAGCTT 1 cut(s) 2348
HpaII CCGG 8 cut(s) 23, 214, 253, 369, 2084, 2765, 2994, 3086
HphI GGTGA 1 cut(s) 1160
Hpy99I CGWCG 6 cut(s) 116, 122, 125, 128, 236, 1385
HpyCH4IV ACGT 4 cut(s) 195, 1421, 2069, 3391
HpySE526I ACGT 4 cut(s) 195, 1421, 2069, 3391
Hsp92I GRCGYC 2 cut(s) 117, 231
Kpn2I TCCGGA 1 cut(s) 2083
LguI GCTCTTC 1 cut(s) 390
MaeI CTAG 7 cut(s) 819, 864, 926, 983, 1056, 1619, 2655
MaeII ACGT 4 cut(s) 195, 1421, 2069, 3391
MflI RGATCY 3 cut(s) 180, 1612, 3265
MhlI GDGCHC 8 cut(s) 23, 152, 171, 252, 402, 875, 1853, 2819
MlsI TGGCCA 1 cut(s) 2826
MluNI TGGCCA 1 cut(s) 2826
MlyI GAGTC 7 cut(s) 182, 377, 682, 824, 1160, 1955, 3456
MmeI TCCRAC 4 cut(s) 216, 1478, 1620, 1818
Mox20I TGGCCA 1 cut(s) 2826
Mph1103I ATGCAT 1 cut(s) 1105
MroI TCCGGA 1 cut(s) 2083
MroXI GAANNNNTTC 2 cut(s) 1274, 2948
MscI TGGCCA 1 cut(s) 2826
MslI CAYNNNNRTG 1 cut(s) 1980
Msp20I TGGCCA 1 cut(s) 2826
MspA1I CMGCKG 3 cut(s) 1346, 1703, 2525
MspI CCGG 8 cut(s) 23, 214, 253, 369, 2084, 2765, 2994, 3086
MspR9I CCNGG 9 cut(s) 23, 215, 242, 254, 370, 666, 750, 3087, 3547
Mva1269I GAATGC 1 cut(s) 1246
MvaI CCWGG 4 cut(s) 242, 666, 750, 3547
NciI CCSGG 5 cut(s) 23, 215, 254, 370, 3087
NcoI CCATGG 1 cut(s) 2953
NheI GCTAGC 1 cut(s) 925
NmeAIII GCCGAG 5 cut(s) 140, 171, 190, 207, 812
NmuCI GTSAC 3 cut(s) 766, 1947, 2090
NsiI ATGCAT 1 cut(s) 1105
NspI RCATGY 6 cut(s) 564, 685, 1787, 1814, 2696, 2786
NspV TTCGAA 1 cut(s) 393
PacI TTAATTAA 1 cut(s) 1008
PaeI GCATGC 2 cut(s) 564, 1787
PceI AGGCCT 1 cut(s) 628
PciI ACATGT 1 cut(s) 2692
PciSI GCTCTTC 1 cut(s) 390
PcsI WCGNNNNNNNCGW 4 cut(s) 120, 192, 399, 2029
PctI GAATGC 1 cut(s) 1246
PdmI GAANNNNTTC 2 cut(s) 1274, 2948
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 1798
PfoI TCCNGGA 2 cut(s) 252, 748
PleI GAGTC 7 cut(s) 182, 377, 682, 824, 1159, 1954, 3456
PpsI GAGTC 7 cut(s) 182, 377, 682, 824, 1159, 1954, 3456
PpuMI RGGWCCY 3 cut(s) 37, 1692, 2868
PscI ACATGT 1 cut(s) 2692
PshBI ATTAAT 1 cut(s) 3168
PsiI TTATAA 1 cut(s) 2202
Psp124BI GAGCTC 2 cut(s) 171, 252
Psp5II RGGWCCY 3 cut(s) 37, 1692, 2868
Psp6I CCWGG 4 cut(s) 240, 664, 748, 3545
PspFI CCCAGC 2 cut(s) 812, 1049
PspGI CCWGG 4 cut(s) 240, 664, 748, 3545
PspPPI RGGWCCY 3 cut(s) 37, 1692, 2868
PstI CTGCAG 6 cut(s) 975, 1378, 2326, 2425, 2530, 3245
PstNI CAGNNNCTG 3 cut(s) 1034, 1349, 2525
PsuI RGATCY 3 cut(s) 180, 1612, 3265
PsyI GACNNNGTC 1 cut(s) 116
PvuII CAGCTG 3 cut(s) 1346, 1703, 2525
RsaI GTAC 4 cut(s) 760, 2189, 2620, 3595
RsaNI GTAC 4 cut(s) 759, 2188, 2619, 3594
RseI CAYNNNNRTG 1 cut(s) 1980
SacI GAGCTC 2 cut(s) 171, 252
SapI GCTCTTC 1 cut(s) 390
ScaI AGTACT 1 cut(s) 3595
SchI GAGTC 7 cut(s) 182, 377, 682, 824, 1160, 1955, 3456
ScrFI CCNGG 9 cut(s) 23, 215, 242, 254, 370, 666, 750, 3087, 3547
SduI GDGCHC 8 cut(s) 23, 152, 171, 252, 402, 875, 1853, 2819
SfcI CTRYAG 6 cut(s) 971, 1374, 2322, 2421, 2526, 3241
SfuI TTCGAA 1 cut(s) 393
SinI GGWCC 8 cut(s) 4, 37, 1692, 2728, 2757, 2767, 2868, 3083
SmiMI CAYNNNNRTG 1 cut(s) 1980
SmlI CTYRAG 3 cut(s) 622, 1157, 2895
SmoI CTYRAG 3 cut(s) 622, 1157, 2895
SphI GCATGC 2 cut(s) 564, 1787
SseBI AGGCCT 1 cut(s) 628
SspI AATATT 1 cut(s) 3172
SspMI CTAG 7 cut(s) 819, 864, 926, 983, 1056, 1619, 2655
SstI GAGCTC 2 cut(s) 171, 252
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 9 cut(s) 21, 213, 240, 252, 368, 664, 748, 3085, 3545
StyI CCWWGG 1 cut(s) 2953
TaiI ACGT 4 cut(s) 198, 1424, 2072, 3394
TaqI TCGA 8 cut(s) 186, 234, 381, 393, 539, 2289, 2381, 2550
TatI WGTACW 2 cut(s) 2618, 3593
TauI GCSGC 1 cut(s) 145
TseFI GTSAC 3 cut(s) 766, 1947, 2090
Tsp45I GTSAC 3 cut(s) 766, 1947, 2090
TspGWI ACGGA 2 cut(s) 2038, 3325
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 1798
VneI GTGCAC 1 cut(s) 1849
VpaK11BI GGWCC 8 cut(s) 4, 37, 1692, 2728, 2757, 2767, 2868, 3083
VspI ATTAAT 1 cut(s) 3168
XagI CCTNNNNNAGG 2 cut(s) 900, 2202
XapI RAATTY 8 cut(s) 655, 993, 1075, 1464, 1488, 2971, 3055, 3211
XbaI TCTAGA 2 cut(s) 1055, 2654
XceI RCATGY 6 cut(s) 564, 685, 1787, 1814, 2696, 2786
XcmI CCANNNNNNNNNTGG 2 cut(s) 563, 820
XmiI GTMKAC 2 cut(s) 1133, 2470
XmnI GAANNNNTTC 2 cut(s) 1274, 2948
XspI CTAG 7 cut(s) 819, 864, 926, 983, 1056, 1619, 2655
ZrmI AGTACT 1 cut(s) 3595
Zsp2I ATGCAT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.