Rh5AG373000

Smg8_Smg9

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
63427310 .. 63434943
7634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG373000.1

Sequence Viewer

Length: 3648 bp
ATGGACCCACCCAACCCGAACCCGAACCCGAACCCGGCATCTATGCGGGTCCTAATCCGCCCACCCCCTTCTTCCTATTCTTCACCTCCTTCCCAAACCATTCCGATTCCCTCCTCCTCCTCCTCCTCAGACCCTCCCTCCACCGACGGCGTCGTCGTGGTGGGCTTCATTGGGCCGCCGAGCACCGACCACTCGGCCCAGCTCATCAATCGGATCCTCGACTCCAACGTGTTCGGGTCAGGCAACCGGGACAAAAGCCTCGGCGTCGAGAACCAGGAGGAGCTCCGGGACTGGTTGAAGTGGCGGAGAATCAGTTACTACCATGAGGAGCAGAAGGGGATTCTGTTCTTGCAGTCTTGCTCCACGCTCTGCTCCGCCGTGGACGATAACGGGTTATCGGACTCCGGGTCGGGTTTCGACTCTGTGTTCGAAGAGCGCGACTTTGGAGACCTCCAGGGGATGCTTTTCATGTTCTCTGTTTGCCATGTAATTATATATATTCTGGAGGGTTCACGGTTTGATACTCAACTCCTGAAAAAGTTTCGAGTGTTACAAGCTGCCAAGCATGCCTTGGCTCCATTAGTCAGACCCCGAAATATGCAGCCAACACCATCCAAGCCCTATTCGTCATCCTCACGGCCTACCACATCTGCAACCTCTTCGAAAAATTCTTCTCCAGGTAGAGGTGGTGGCATGTTGACTCGCAATGCTTCTGCCATTTCGCTAATGTCAGGTTTAGGTTCCTACACTTCTTTGTTTCCTGGACAGTGTACCCCAGTCACACTGTTTGTTTTCATTGATGATTTCTCTGATGTGCCAAATCCCAGCTCTAGTGTGGAGGACTCGGCAGATACATCCTCACTAAATCAGCCTTCTAGTTTGGGCACTTCAGCAAGGCCAAGTTTGCCTATTAAAGGTTCTGGTTCAGTGGTTGTGCTAGCACGCCCTGTGAGTAAATCTGAGGGTAGTTTTAGGAAGAAGCTGCAGTCATCCCTAGAAGCACAAATTCGTTTCTTAATTAAGAAGTGTAGAACACTCTCAGGTTCTGAAACTGGTCATGCTGGGTCTAGAAATGGCGGTGCTTCAAATTCAGCACCTCTGTTTTCACTTGATGCATCAAGGGCGGTTCTGTTGTTAGATAGGTATACAAATCAGAGAGGTGAGTCGCTTGAGTTTGCTACTGGCCTTGTTGAAGATGTTTTGAATGGGAAGGCAACCTCAGATTCTCTTTTGCTTGAAAGTCATGGTCAGAATGCAAGTAAAGAGGATATAATATCAGTGAAGGAGTTCATTTACAGGCAATCAGATATTCTAAGAGGGAGGGGGGGAGTTGTAACCAATTCCAATAGTGGTTCAGCTGCTGGTGTAGGTATGGCTGCTGTTGCTGCAGCTGTCGCTGCTGCGTCAGCAGCATCAGCTGCTGCATCAACTACGTCTGGAAAGACATTTAATGCTCCAGAACTTCCAACTCTCCAAATTTGGTTATCTTCCAGTCAACAAATTCTTTGTGGGGTTCTTTCAGCAAAAGGTGGCTGCATAGATGAAACTGAAATTAGTAAAAGAAAACCTCGGACGAGGAACACTATTCCACAGCCAGTTGAAGGAGTTTCTTCGAAAGGTATGGATCCCCTAGATTTAGCAGTATCTTGGTTGGAAAGTGGTAATAAAATGAACTCCAGATTTTCGACTTTGTGGTGTGAAAGGACCCTTCCAGCTGCCAAAGAGGTTTATCTGAAAGACTTGCCTGCTTGTTACCCAACTTCACAACATGAAGCTCATCTGGAGAAGGCTTTGCATGCTTTCCACTCAATGGTAAAAGGACATGCAGTGCAGCATTTTGCCAAAAAGTTGGAGGACGAGTGCACCTCCATCTGGAAATCTGGAAGGCAACTGTGTGATGCTGTTAGTTTGACTGGAAAACCATGTATGCACCAGAGACATAATGTTGATACTAATGAGTCACTCTCAGGAGCTACTGTGAAGCAACATTCCAGTGGATATGTTTTCCTTCATGCCTGTTCTTGTGGCCGTTCACGGAGATTACGATCTGATCCTTTTGACTTTGAATCAGCGAACATTACTTTTAGTTGCTTTCCGGACTGTGACAAGCTCCTCCCTACACTTCAATTACCTGAAGTAAGTAGTTCAGGGCCTATTCAATCTTCCTCATGGAGTTTGATTCGCATTGGGGGTGCAAGGTACTATGACTCTTATAAAGGCTTGCTTCAAAGCGGGTTCTGTTCAACTCAGAAGTTTCTTATGAAATGGACAATATCTATGGAGATACAGAATAGGGCAATCGATTTCACTGCCAAAGCAATGGATCAAGGTTCTGCAGTTAAGTCAGGTACGAACTTTAAGCTTGAATCTAAAGCTGATGTGCAGTTGCACTCGAAGGAGTTACAATCCAGAGTTGAAAGCCATAGAAAACCTGCAGAGGACATAGTGTCTGATGATAATAAAATCAGTTTTGGTAAAGGTCTACCCAACTTTACCATGAGGAAACCTTTTTCTGAGGTTGTTGCTGGAACAGCAGCTGCAGATTCAGGATTTCCTCCTATCCAGCTGAGGAAAAAATCTGCATCCAGTTTAGATAAGAGTTTCAAGCAAATTAGGTCAAGGGATCAGAGTACAGAGCAGAATAGTGATAAAGGAACTCAAAAATCTAGAGATGATTTACCTGTTCAAGAAACAGTGAGTGGGATCAGTAGCACATATGTTGATCCTTATCTACGAATAGGTAGTAATGTGGTCCCTATGAACCTGAATGGCGTTGAAAGGTCCAAACCGGACCCTTCTTTTAAGCATGTAACAGTGTATGTTGGGTTTGAGCATGAGTGCCCGCATGGCCATCGTTTTCTATTAAATCCAGAGAATCTTAATGAGCTTGGGTCCTCATATCAGTTGCCTGAAGAATCTCAAGTGAAATCAGACCATATTCAGGCAGATTCTTCAAAACTAAGTAGGAATGGTTTCCATGGTAAAGCCCATCGAAATTCAAATAGGATCACTGCTACCGGCACAAATAGGGAGAGAAATGTAAATAAGTCAAAAGATATAGTAACTAATGGTGTCCTGAATTCAGATGGGATGATACAGTTCTCAGGACCAGGAAAGGAGCAGAATCATACTATTAGTGTATCAACAGTTGCTAATTTTTCCAAACACGATGAAGGGAGCTTTCAGTCCATTAATATTGATGATGGTGGATGTGCTTTCTCCATGTTGAATAGAAATTTACCAATCTATATGAATTGCCCACACTGCAGGCTCTCTAAGAATAAGCAGGATCCTCCGAATACTAAGTTTTCGGGGACAGTATCACAGCTTCAACGGATTTTTATGGTTACACCTCCATTTCCAGTCATATTAGCTACTTGCCCAGTGATACAATTTGAGGCATCATGTCTACCTCCATCAATCCCAGAACGTGAGCAGGAGTTGCGGTTCAGCCTCGGATGCCAAGTGGTATTACCTCCAGAGAGTTTCCTTACTCTTAGACTCCCATTTGTGTATGGTGTAGAACTGGAGGATGGAAGTTTATGTTCTCTAAACTGTTTTGAACATCAACCAGAGGTTACTGCCTGGATTACCAAAGGAACAGCATTACAGGTCATATCCAAAAGAAATAGTACTGGTCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1215

Amino Acids

132.04

Weight (kDa)

8.39

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Smg8_Smg9 PF10220 49 - 197 3.6e-12 Smg8_Smg9
Smg8_Smg9 PF10220 556 - 695 1.6e-34 Smg8_Smg9
Smg8_Smg9 PF10220 1074 - 1174 1.3e-06 Smg8_Smg9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2214
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 2440
AccB7I CCANNNNNTGG 1 cut(s) 1810
AccI GTMKAC 3 cut(s) 1145, 2482, 3409
AccII CGCG 1 cut(s) 438
AccIII TCCGGA 1 cut(s) 2095
AcoI YGGCCR 2 cut(s) 2026, 2848
AcsI RAATTY 8 cut(s) 667, 1005, 1087, 1476, 1500, 2995, 3079, 3235
AcuI CTGAAG 3 cut(s) 873, 2154, 2931
AcyI GRCGYC 2 cut(s) 150, 264
AfaI GTAC 5 cut(s) 772, 2201, 2350, 2632, 3634
AfiI CCNNNNNNNGG 7 cut(s) 34, 683, 914, 1601, 1810, 1872, 2941
AflIII ACRYGT 1 cut(s) 228
AhdI GACNNNNNGTC 2 cut(s) 406, 2446
AjnI CCWGG 6 cut(s) 273, 453, 676, 760, 3109, 3584
AloI GAACNNNNNNTCC 2 cut(s) 3431, 3463
Alw21I GWGCWC 3 cut(s) 185, 285, 1865
Alw26I GTCTC 2 cut(s) 441, 1930
Alw44I GTGCAC 1 cut(s) 1861
AlwNI CAGNNNCTG 4 cut(s) 1046, 1361, 1421, 2537
Aor13HI TCCGGA 1 cut(s) 2095
AoxI GGCC 8 cut(s) 173, 195, 638, 896, 1183, 2026, 2150, 2848
ApaLI GTGCAC 1 cut(s) 1861
ApoI RAATTY 8 cut(s) 667, 1005, 1087, 1476, 1500, 2995, 3079, 3235
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AseI ATTAAT 1 cut(s) 3192
Asp700I GAANNNNTTC 2 cut(s) 1286, 2972
AspLEI GCGC 1 cut(s) 438
AsuC2I CCSGG 4 cut(s) 35, 248, 287, 406
AsuHPI GGTGA 2 cut(s) 75, 1172
AsuII TTCGAA 3 cut(s) 429, 662, 1613
AsuNHI GCTAGC 1 cut(s) 937
AvaII GGWCC 8 cut(s) 4, 49, 1704, 2752, 2781, 2791, 2892, 3107
BaeGI GKGCMC 3 cut(s) 887, 1865, 2843
BalI TGGCCA 1 cut(s) 2850
BamHI GGATCC 3 cut(s) 213, 1624, 3289
BanII GRGCYC 1 cut(s) 285
BarI GAAGNNNNNNTAC 2 cut(s) 3312, 3344
Bbv12I GWGCWC 3 cut(s) 185, 285, 1865
BbvCI CCTCAGC 1 cut(s) 2567
BccI CCATC 8 cut(s) 619, 1877, 2859, 2997, 3080, 3197, 3424, 3527
BceAI ACGGC 4 cut(s) 163, 362, 653, 2013
BcgI CGANNNNNNTGC 6 cut(s) 642, 676, 2291, 2325, 2834, 2868
BciT130I CCWGG 6 cut(s) 275, 455, 678, 762, 3111, 3586
BcnI CCSGG 4 cut(s) 35, 248, 287, 406
BcoDI GTCTC 2 cut(s) 441, 1930
BfaI CTAG 7 cut(s) 831, 876, 938, 995, 1068, 1631, 2667
BfmI CTRYAG 6 cut(s) 983, 1386, 2334, 2433, 2538, 3265
BfuAI ACCTGC 1 cut(s) 2440
BglI GCCNNNNNGGC 1 cut(s) 2847
BmcAI AGTACT 1 cut(s) 3634
Bme18I GGWCC 8 cut(s) 4, 49, 1704, 2752, 2781, 2791, 2892, 3107
BmeRI GACNNNNNGTC 2 cut(s) 406, 2446
BmrI ACTGGG 2 cut(s) 770, 3377
BmtI GCTAGC 1 cut(s) 941
BmuI ACTGGG 2 cut(s) 770, 3377
BplI GAGNNNNNCTC 4 cut(s) 1850, 1882, 1949, 1981
BpmI CTGGAG 8 cut(s) 437, 524, 660, 1440, 1660, 1802, 3462, 3548
Bpu10I CCTNAGC 1 cut(s) 2567
Bpu14I TTCGAA 3 cut(s) 429, 662, 1613
BpuEI CTTGAG 2 cut(s) 1190, 2904
BpuMI CCSGG 4 cut(s) 35, 248, 287, 406
Bsa29I ATCGAT 1 cut(s) 2301
BsaBI GATNNNNATC 2 cut(s) 2044, 2727
BsaHI GRCGYC 2 cut(s) 150, 264
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 7 cut(s) 259, 378, 454, 570, 1568, 2977, 3454
BsaWI WCCGGW 2 cut(s) 2095, 2788
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 683, 914, 1601, 1810, 1872, 2941
Bse118I RCCGGY 1 cut(s) 3017
Bse3DI GCAATG 2 cut(s) 712, 2325
Bse8I GATNNNNATC 2 cut(s) 2044, 2727
BseAI TCCGGA 1 cut(s) 2095
BseBI CCWGG 6 cut(s) 275, 455, 678, 762, 3111, 3586
BseCI ATCGAT 1 cut(s) 2301
BseDI CCNNGG 7 cut(s) 259, 378, 454, 570, 1568, 2977, 3454
BseJI GATNNNNATC 2 cut(s) 2044, 2727
BseLI CCNNNNNNNGG 7 cut(s) 34, 683, 914, 1601, 1810, 1872, 2941
BseMI GCAATG 2 cut(s) 712, 2325
BseMII CTCAG 9 cut(s) 141, 951, 1053, 1233, 1980, 2261, 2505, 2558, 3117
BseRI GAGGAG 8 cut(s) 103, 106, 109, 112, 115, 293, 341, 2102
BseSI GKGCMC 3 cut(s) 887, 1865, 2843
BseYI CCCAGC 3 cut(s) 198, 824, 1061
BsgI GTGCAG 2 cut(s) 1850, 2402
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 8 cut(s) 175, 197, 640, 898, 1185, 2028, 2152, 2850
BshVI ATCGAT 1 cut(s) 2301
BsiHKAI GWGCWC 3 cut(s) 185, 285, 1865
BsiSI CCGG 7 cut(s) 35, 247, 286, 405, 2096, 2789, 3018
BslFI GGGAC 4 cut(s) 263, 302, 2738, 3328
BslI CCNNNNNNNGG 7 cut(s) 34, 683, 914, 1601, 1810, 1872, 2941
BsmAI GTCTC 2 cut(s) 441, 1930
BsmFI GGGAC 4 cut(s) 263, 302, 2738, 3328
BsmI GAATGC 1 cut(s) 1258
BsnI GGCC 8 cut(s) 175, 197, 640, 898, 1185, 2028, 2152, 2850
Bso31I GGTCTC 1 cut(s) 441
Bsp119I TTCGAA 3 cut(s) 429, 662, 1613
Bsp1286I GDGCHC 5 cut(s) 185, 285, 887, 1865, 2843
Bsp13I TCCGGA 1 cut(s) 2095
Bsp19I CCATGG 1 cut(s) 2977
BspANI GGCC 8 cut(s) 175, 197, 640, 898, 1185, 2028, 2152, 2850
BspCNI CTCAG 9 cut(s) 140, 952, 1052, 1232, 1979, 2260, 2506, 2559, 3116
BspDI ATCGAT 1 cut(s) 2301
BspEI TCCGGA 1 cut(s) 2095
BspFNI CGCG 1 cut(s) 438
BspMAI CTGCAG 6 cut(s) 987, 1390, 2338, 2437, 2542, 3269
BspMI ACCTGC 1 cut(s) 2440
BspOI GCTAGC 1 cut(s) 941
BspQI GCTCTTC 1 cut(s) 426
BspT104I TTCGAA 3 cut(s) 429, 662, 1613
BspTNI GGTCTC 1 cut(s) 441
BsrDI GCAATG 2 cut(s) 712, 2325
BsrFI RCCGGY 1 cut(s) 3017
BssAI RCCGGY 1 cut(s) 3017
BssECI CCNNGG 7 cut(s) 259, 378, 454, 570, 1568, 2977, 3454
BssNAI GTATAC 1 cut(s) 1146
BssNI GRCGYC 2 cut(s) 150, 264
BssT1I CCWWGG 2 cut(s) 570, 2977
Bst1107I GTATAC 1 cut(s) 1146
Bst2UI CCWGG 6 cut(s) 275, 455, 678, 762, 3111, 3586
Bst6I CTCTTC 2 cut(s) 426, 664
BstACI GRCGYC 2 cut(s) 150, 264
BstAPI GCANNNNNTGC 2 cut(s) 1418, 3442
BstBI TTCGAA 3 cut(s) 429, 662, 1613
BstC8I GCNNGC 8 cut(s) 567, 939, 943, 1746, 1797, 2222, 2843, 3269
BstDSI CCRYGG 2 cut(s) 378, 2977
BstENI CCTNNNNNAGG 1 cut(s) 912
BstFNI CGCG 1 cut(s) 438
BstHHI GCGC 1 cut(s) 438
BstMAI GTCTC 2 cut(s) 441, 1930
BstNI CCWGG 6 cut(s) 275, 455, 678, 762, 3111, 3586
BstNSI RCATGY 5 cut(s) 569, 697, 1799, 1826, 2810
BstSFI CTRYAG 6 cut(s) 983, 1386, 2334, 2433, 2538, 3265
BstSLI GKGCMC 3 cut(s) 887, 1865, 2843
BstUI CGCG 1 cut(s) 438
BstX2I RGATCY 3 cut(s) 213, 1624, 3289
BstXI CCANNNNNNTGG 2 cut(s) 1849, 2320
BstYI RGATCY 3 cut(s) 213, 1624, 3289
BstZ17I GTATAC 1 cut(s) 1146
Bsu15I ATCGAT 1 cut(s) 2301
BsuRI GGCC 8 cut(s) 175, 197, 640, 898, 1185, 2028, 2152, 2850
BsuTUI ATCGAT 1 cut(s) 2301
BtgI CCRYGG 2 cut(s) 378, 2977
BtsI GCAGTG 4 cut(s) 1833, 2307, 3009, 3262
BveI ACCTGC 1 cut(s) 2440
Cac8I GCNNGC 8 cut(s) 567, 939, 943, 1746, 1797, 2222, 2843, 3269
CaiI CAGNNNCTG 4 cut(s) 1046, 1361, 1421, 2537
CfoI GCGC 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 3017
ClaI ATCGAT 1 cut(s) 2301
CseI GACGC 3 cut(s) 139, 253, 1392
Csp6I GTAC 5 cut(s) 771, 2200, 2349, 2631, 3633
CviQI GTAC 5 cut(s) 771, 2200, 2349, 2631, 3633
DrdI GACNNNNNNGTC 1 cut(s) 152
DriI GACNNNNNGTC 2 cut(s) 406, 2446
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 2 cut(s) 2026, 2848
Eam1104I CTCTTC 2 cut(s) 426, 664
Eam1105I GACNNNNNGTC 2 cut(s) 406, 2446
EarI CTCTTC 2 cut(s) 426, 664
EciI GGCGGA 3 cut(s) 47, 319, 364
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 570, 2977
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 441
Eco47I GGWCC 8 cut(s) 4, 49, 1704, 2752, 2781, 2791, 2892, 3107
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 3 cut(s) 873, 2154, 2931
EcoICRI GAGCTC 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 912
EcoO109I RGGNCCY 4 cut(s) 49, 1704, 2150, 2892
EcoRI GAATTC 1 cut(s) 3079
EcoRII CCWGG 6 cut(s) 273, 453, 676, 760, 3109, 3584
EcoT14I CCWWGG 2 cut(s) 570, 2977
EcoT22I ATGCAT 1 cut(s) 1117
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 2 cut(s) 570, 2977
FalI AAGNNNNNCTT 4 cut(s) 554, 586, 2208, 2240
FaqI GGGAC 4 cut(s) 263, 302, 2738, 3328
FauI CCCGC 3 cut(s) 39, 2225, 2850
FauNDI CATATG 1 cut(s) 2716
FblI GTMKAC 3 cut(s) 1145, 2482, 3409
FriOI GRGCYC 1 cut(s) 285
FspBI CTAG 7 cut(s) 831, 876, 938, 995, 1068, 1631, 2667
GlaI GCGC 1 cut(s) 437
GsaI CCCAGC 3 cut(s) 202, 828, 1065
GsuI CTGGAG 8 cut(s) 437, 524, 660, 1440, 1660, 1802, 3462, 3548
HaeIII GGCC 8 cut(s) 175, 197, 640, 898, 1185, 2028, 2152, 2850
HapII CCGG 7 cut(s) 35, 247, 286, 405, 2096, 2789, 3018
HgaI GACGC 3 cut(s) 139, 253, 1392
HhaI GCGC 1 cut(s) 438
Hin1I GRCGYC 2 cut(s) 150, 264
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 2 cut(s) 699, 1496
HindII GTYRAC 2 cut(s) 699, 1496
HindIII AAGCTT 1 cut(s) 2360
HpaII CCGG 7 cut(s) 35, 247, 286, 405, 2096, 2789, 3018
HphI GGTGA 2 cut(s) 75, 1172
Hpy99I CGWCG 4 cut(s) 149, 155, 158, 269
HpyCH4IV ACGT 3 cut(s) 228, 1433, 3430
HpySE526I ACGT 3 cut(s) 228, 1433, 3430
Hsp92I GRCGYC 2 cut(s) 150, 264
HspAI GCGC 1 cut(s) 436
Kpn2I TCCGGA 1 cut(s) 2095
LguI GCTCTTC 1 cut(s) 426
MaeI CTAG 7 cut(s) 831, 876, 938, 995, 1068, 1631, 2667
MaeII ACGT 3 cut(s) 228, 1433, 3430
MflI RGATCY 3 cut(s) 213, 1624, 3289
MhlI GDGCHC 5 cut(s) 185, 285, 887, 1865, 2843
MlsI TGGCCA 1 cut(s) 2850
MluNI TGGCCA 1 cut(s) 2850
MlyI GAGTC 9 cut(s) 215, 395, 413, 694, 836, 1172, 1967, 2201, 3495
MmeI TCCRAC 4 cut(s) 249, 1490, 1632, 1830
Mox20I TGGCCA 1 cut(s) 2850
Mph1103I ATGCAT 1 cut(s) 1117
MroI TCCGGA 1 cut(s) 2095
MroXI GAANNNNTTC 2 cut(s) 1286, 2972
MscI TGGCCA 1 cut(s) 2850
MslI CAYNNNNRTG 1 cut(s) 1992
Msp20I TGGCCA 1 cut(s) 2850
MspA1I CMGCKG 6 cut(s) 1358, 1391, 1418, 1715, 2537, 2566
MspI CCGG 7 cut(s) 35, 247, 286, 405, 2096, 2789, 3018
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 6 cut(s) 275, 455, 678, 762, 3111, 3586
MvnI CGCG 1 cut(s) 438
NciI CCSGG 4 cut(s) 35, 248, 287, 406
NcoI CCATGG 1 cut(s) 2977
NdeI CATATG 1 cut(s) 2716
NheI GCTAGC 1 cut(s) 937
NmeAIII GCCGAG 4 cut(s) 173, 204, 240, 824
NmuCI GTSAC 3 cut(s) 778, 1959, 2102
NsiI ATGCAT 1 cut(s) 1117
NspI RCATGY 5 cut(s) 569, 697, 1799, 1826, 2810
NspV TTCGAA 3 cut(s) 429, 662, 1613
PacI TTAATTAA 1 cut(s) 1020
PaeI GCATGC 2 cut(s) 569, 1799
PciSI GCTCTTC 1 cut(s) 426
PcsI WCGNNNNNNNCGW 4 cut(s) 153, 225, 435, 2041
PctI GAATGC 1 cut(s) 1258
PdmI GAANNNNTTC 2 cut(s) 1286, 2972
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 1810
PfoI TCCNGGA 2 cut(s) 285, 760
PleI GAGTC 9 cut(s) 215, 395, 413, 694, 836, 1171, 1966, 2201, 3495
PpsI GAGTC 9 cut(s) 215, 395, 413, 694, 836, 1171, 1966, 2201, 3495
PpuMI RGGWCCY 3 cut(s) 49, 1704, 2892
PshBI ATTAAT 1 cut(s) 3192
PsiI TTATAA 1 cut(s) 2214
Psp124BI GAGCTC 1 cut(s) 285
Psp5II RGGWCCY 3 cut(s) 49, 1704, 2892
Psp6I CCWGG 6 cut(s) 273, 453, 676, 760, 3109, 3584
PspFI CCCAGC 3 cut(s) 198, 824, 1061
PspGI CCWGG 6 cut(s) 273, 453, 676, 760, 3109, 3584
PspPPI RGGWCCY 3 cut(s) 49, 1704, 2892
PstI CTGCAG 6 cut(s) 987, 1390, 2338, 2437, 2542, 3269
PstNI CAGNNNCTG 4 cut(s) 1046, 1361, 1421, 2537
PsuI RGATCY 3 cut(s) 213, 1624, 3289
PsyI GACNNNGTC 1 cut(s) 149
PvuII CAGCTG 6 cut(s) 1358, 1391, 1418, 1715, 2537, 2566
RsaI GTAC 5 cut(s) 772, 2201, 2350, 2632, 3634
RsaNI GTAC 5 cut(s) 771, 2200, 2349, 2631, 3633
RseI CAYNNNNRTG 1 cut(s) 1992
SacI GAGCTC 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 426
ScaI AGTACT 1 cut(s) 3634
SchI GAGTC 9 cut(s) 215, 395, 413, 694, 836, 1172, 1967, 2201, 3495
SduI GDGCHC 5 cut(s) 185, 285, 887, 1865, 2843
SfcI CTRYAG 6 cut(s) 983, 1386, 2334, 2433, 2538, 3265
SfuI TTCGAA 3 cut(s) 429, 662, 1613
SinI GGWCC 8 cut(s) 4, 49, 1704, 2752, 2781, 2791, 2892, 3107
SmiMI CAYNNNNRTG 1 cut(s) 1992
SmlI CTYRAG 2 cut(s) 1169, 2919
SmoI CTYRAG 2 cut(s) 1169, 2919
SphI GCATGC 2 cut(s) 569, 1799
SspI AATATT 1 cut(s) 3196
SspMI CTAG 7 cut(s) 831, 876, 938, 995, 1068, 1631, 2667
SstI GAGCTC 1 cut(s) 285
StyI CCWWGG 2 cut(s) 570, 2977
TaiI ACGT 3 cut(s) 231, 1436, 3433
TatI WGTACW 2 cut(s) 2630, 3632
TauI GCSGC 1 cut(s) 178
TseFI GTSAC 3 cut(s) 778, 1959, 2102
Tsp45I GTSAC 3 cut(s) 778, 1959, 2102
TspGWI ACGGA 2 cut(s) 2050, 3349
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 1810
VneI GTGCAC 1 cut(s) 1861
VpaK11BI GGWCC 8 cut(s) 4, 49, 1704, 2752, 2781, 2791, 2892, 3107
VspI ATTAAT 1 cut(s) 3192
XagI CCTNNNNNAGG 1 cut(s) 912
XapI RAATTY 8 cut(s) 667, 1005, 1087, 1476, 1500, 2995, 3079, 3235
XbaI TCTAGA 2 cut(s) 1067, 2666
XceI RCATGY 5 cut(s) 569, 697, 1799, 1826, 2810
XcmI CCANNNNNNNNNTGG 2 cut(s) 568, 832
XmiI GTMKAC 3 cut(s) 1145, 2482, 3409
XmnI GAANNNNTTC 2 cut(s) 1286, 2972
XspI CTAG 7 cut(s) 831, 876, 938, 995, 1068, 1631, 2667
ZrmI AGTACT 1 cut(s) 3634
Zsp2I ATGCAT 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.