Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005910

Physical Location & Seq

Genomic Coordinates Reverse (-)

11042137 .. 11043222

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCAAGTTTAGGTTCCTACACTTCTTTGTTTCCAGGACAGTGTAACCTAGTCACATTGTTTGTTTTTGTTGATGATTTCTTTAATGTGCCAAATCCCAATTCTAATGTGGACGAGTCGGCAGATACATCCTCAATTAATCAATCGTCTAGTGTGAGCAATTTAGCATGGCCAAGCTTGCCTGTTAAAGGTTCGGGTTTAGTGGTTGTGCTAACATGCCTTTGTAGAACACTTCTAGGTTTTGAAAGCAGTCATGCGGGGTCAAGAAGTAGGGGTGCAAATTCTGCACCTTTATTCTCCCTTGATGCATCAAGGGTTGTTCTTTTGTTAGATAGGTCTACAAATCAGAGAGTTTCTTCAAAAGGTACGAATCTTCTAGATTTAGCAGCATCTTGGCTCGAAAATGATAAAAGGCTGAACACAAAATTTTTGATTTTGTGGTGGGAAATAACTCTTCCAGCTGCTAAAGAGGTTTATCTCAAAGACTTGTTTGGTTGTTACACAACTTCACATCATGAATCACATTTAAAGAAGGCTTTGCAAGCTTTCCATTCAATGGTGAAAGGACATGCAGTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Smg8_Smg9

Protein Analysis

194

Amino Acids

21.11

Weight (kDa)

7.73

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005910)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30640 FvH4_3g30640 FvH4_3g30640 FvH4_3g30640
malus_domestica	MD03G1129000.v1.1
prunus_persica	Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1 Prupe.6G112700_v2.0.a1
pyrus_communis	pycom11g12120 pycom11g12130
rosa_chinensis	RchiOBHm_Chr5g0056861
rosa_laevigata	RLG00000035131
rosa_multiflora	Rmu_sc0001460.1_g000021
rosa_roxburghii	Rroxscaffold_1G00023440
rosa_rugosa	Rorug05G0302800
rosa_samantha	Rh5AG373000 Rh5BG384000 Rh5CG407200 Rh5DG397200
rosa_wichuraiana	Rw5G034970 Rw5G035030 Rw5G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	338
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	280, 425
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	188, 556
AgsI	TTSAA	3 cut(s)	245, 360, 555
AjnI	CCWGG	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	3 cut(s)	177, 461, 545
AluI	AGCT	3 cut(s)	177, 461, 545
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	386, 461
ApoI	RAATTY	2 cut(s)	280, 425
AseI	ATTAAT	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	571
BalI	TGGCCA	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	398, 448
BciT130I	CCWGG	1 cut(s)	36
BfaI	CTAG	4 cut(s)	50, 150, 236, 377
BisI	GCNGC	2 cut(s)	387, 462
BlsI	GCNGC	2 cut(s)	388, 463
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	295, 317, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 556
BseBI	CCWGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	2 cut(s)	188, 556
BseXI	GCAGC	2 cut(s)	398, 448
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	188, 556
BsnI	GGCC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	179, 543
BstENI	CCTNNNNNAGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 284, 542
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	2 cut(s)	219, 572
BstSCI	CCNGG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	398, 448
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	128
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	47, 579
Cac8I	GCNNGC	2 cut(s)	179, 543
CciI	TCATGA	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	5 cut(s)	168, 216, 254, 515, 569
CviJI	RGCY	7 cut(s)	172, 177, 397, 415, 461, 536, 545
CviKI_1	RGCY	7 cut(s)	172, 177, 397, 415, 461, 536, 545
CviQI	GTAC	1 cut(s)	366
DraI	TTTAAA	1 cut(s)	528
EaeI	YGGCCR	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	5 cut(s)	171, 219, 257, 518, 572
FaiI	YATR	5 cut(s)	169, 217, 255, 516, 570
FatI	CATG	5 cut(s)	167, 215, 253, 514, 568
FauI	CCCGC	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	2 cut(s)	387, 462
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	2 cut(s)	387, 462
FspBI	CTAG	4 cut(s)	50, 150, 236, 377
GluI	GCNGC	2 cut(s)	387, 462
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	5 cut(s)	171, 219, 257, 518, 572
HindIII	AAGCTT	2 cut(s)	175, 543
HinfI	GANTC	3 cut(s)	116, 370, 518
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	112, 339
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	3 cut(s)	264, 377, 515
Hpy8I	GTNNAC	2 cut(s)	112, 339
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	6 cut(s)	278, 287, 308, 541, 572, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 284, 542
Hsp92II	CATG	5 cut(s)	171, 219, 257, 518, 572
LpnPI	CCDG	4 cut(s)	21, 48, 195, 471
Lsp1109I	GCAGC	2 cut(s)	398, 448
LweI	GCATC	3 cut(s)	295, 317, 398
MaeI	CTAG	4 cut(s)	50, 150, 236, 377
MaeIII	GTNAC	3 cut(s)	44, 52, 497
MboII	GAAGA	3 cut(s)	348, 365, 446
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	5 cut(s)	100, 135, 160, 280, 425
MluNI	TGGCCA	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	142, 463
Mox20I	TGGCCA	1 cut(s)	172
Mph1103I	ATGCAT	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	4 cut(s)	84, 138, 186, 527
Msp20I	TGGCCA	1 cut(s)	172
MspA1I	CMGCKG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	178, 284, 542
NlaIII	CATG	5 cut(s)	171, 219, 257, 518, 572
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	2 cut(s)	219, 572
PagI	TCATGA	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	370, 518
PflMI	CCANNNNNTGG	1 cut(s)	556
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	388, 463
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	84, 138, 186, 527
SatI	GCNGC	2 cut(s)	387, 462
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	36
SfaNI	GCATC	3 cut(s)	295, 317, 398
Sse9I	AATT	5 cut(s)	100, 135, 160, 280, 425
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	4 cut(s)	50, 150, 236, 377
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	399
TasI	AATT	5 cut(s)	100, 135, 160, 280, 425
TfiI	GAWTC	2 cut(s)	370, 518
Tru1I	TTAA	4 cut(s)	84, 138, 186, 527
Tru9I	TTAA	4 cut(s)	84, 138, 186, 527
TscAI	CASTG	2 cut(s)	47, 579
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	386, 461
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	531
TspRI	CASTG	2 cut(s)	47, 579
Van91I	CCANNNNNTGG	1 cut(s)	556
VspI	ATTAAT	1 cut(s)	138
XagI	CCTNNNNNAGG	1 cut(s)	186
XapI	RAATTY	2 cut(s)	280, 425
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	2 cut(s)	219, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	338
XspI	CTAG	4 cut(s)	50, 150, 236, 377
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.