Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Reverse (-)

12845965 .. 12848668

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTTTATTGAACCATCATGTTGAAGACCAAAATTTGTGCTTTCAAGCACCTCCTTTTATTGAATGGCTGAAACCACCTTCCTCTTTTTCATCATCGTCATCATCGTCATCATCTTCCTTTTGCATATCTGAGAATAGCACTATGCAATGCTTGCCTCTTTTAAGCCGGTTTACGGACACCAAGCCGGTGAAAATAGAAGATGCTGGGGTGCAGAAAGAAGGTTATGGGGTCAAAGAAGAGCAGATGGAGAAAGTTACAGTTGCCTTGCACATTGGACTGCCTAATAGTACTAGTACTACTACAGGTGTTTACTCAGACACATATGATCAGAATAAGAAGGTTTTGAATCTCAAGGAAGAACAAGTAGTCATGAAAAAGAGCTTTCATGGGTGTTCTTTTAACGCAGAAAGTAGGTTTTGGATACCAACGCCTGCTCAGATTCTTGTCGGGCCGATGCAATTTGCTTGCTCCATTTGCAGCAAGACCTTCAATAGGTACAATAACATGCAGACAAAAAAGTACTGTGTATTCGGGTTACAGATGCATATGTGGGGCCATGGATCTGAATATAGAAAAGGGCCAGATTCTCTAAAAGGAACACAACCAGCCGCAATGCTGAGGCTACCATGCTATTGTTGTGCTCAAGGCTGCAAGAACAACATTAACCACCCAAGAGCCAAGCCACTCAAAGACTTCAGAACTCTCCAAACTCACTACAAGAGAAAGCACGGAGCAAAGCCATTCATGTGTAGAAAATGTGCCAAAACATTTGCAGTTAAAGGCGATTGGAGAACCCATGAAAAGAACTGTGGCAAGCTATGGTATTGCACTTGCGGATCTGATTTTAAACACAAAAGATCTCTCAAGGACCATATTAGATCCTTTGGTAAGGGACATTCTCCACACCCGTCTCTTGAGGGTTTTCACGAGGATGAGAAGGAATGCGTAACTGGTTCGGAAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

324

Amino Acids

36.59

Weight (kDa)

8.99

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	211 - 245	4.5e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	248 - 272	1.8e-11	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	612, 837
AclWI	GGATC	3 cut(s)	571, 847, 876
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	682
AfaI	GTAC	4 cut(s)	292, 298, 500, 524
AfiI	CCNNNNNNNGG	2 cut(s)	175, 495
AgsI	TTSAA	6 cut(s)	13, 26, 47, 65, 349, 493
AhlI	ACTAGT	1 cut(s)	293
AluBI	AGCT	2 cut(s)	384, 820
AluI	AGCT	2 cut(s)	384, 820
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	918
AlwI	GGATC	3 cut(s)	571, 847, 876
AoxI	GGCC	3 cut(s)	452, 556, 581
ApeKI	GCWGC	2 cut(s)	480, 651
ApoI	RAATTY	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	452, 556, 581, 871
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	871
BauI	CACGAG	1 cut(s)	929
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	646
BbvCI	CCTCAGC	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	492, 638
BccI	CCATC	2 cut(s)	24, 241
BciVI	GTATCC	1 cut(s)	417
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	918
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	417
BglII	AGATCT	1 cut(s)	860
BisI	GCNGC	3 cut(s)	481, 612, 652
BlsI	GCNGC	3 cut(s)	482, 613, 653
BmcAI	AGTACT	3 cut(s)	292, 298, 524
Bme18I	GGWCC	1 cut(s)	871
BmgT120I	GGNCC	4 cut(s)	452, 556, 581, 871
BmiI	GGNNCC	1 cut(s)	557
BmsI	GCATC	3 cut(s)	193, 447, 534
BpiI	GAAGAC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	4 cut(s)	338, 630, 851, 938
BsaJI	CCNNGG	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 495
Bse118I	RCCGGY	2 cut(s)	168, 187
Bse1I	ACTGG	1 cut(s)	958
Bse3DI	GCAATG	2 cut(s)	155, 621
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	1 cut(s)	940
BseLI	CCNNNNNNNGG	2 cut(s)	175, 495
BseMI	GCAATG	2 cut(s)	155, 621
BseMII	CTCAG	4 cut(s)	123, 330, 452, 611
BseNI	ACTGG	1 cut(s)	958
BseXI	GCAGC	2 cut(s)	492, 638
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	454, 558, 583
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	169, 188
BslFI	GGGAC	1 cut(s)	909
BslI	CCNNNNNNNGG	2 cut(s)	175, 495
BsmAI	GTCTC	1 cut(s)	918
BsmBI	CGTCTC	1 cut(s)	918
BsmFI	GGGAC	1 cut(s)	909
BsmI	GAATGC	1 cut(s)	950
BsnI	GGCC	3 cut(s)	454, 558, 583
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	5 cut(s)	328, 563, 839, 860, 881
Bsp19I	CCATGG	1 cut(s)	559
BspACI	CCGC	2 cut(s)	612, 837
BspANI	GGCC	3 cut(s)	454, 558, 583
BspCNI	CTCAG	4 cut(s)	124, 329, 451, 612
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	557
BspPI	GGATC	3 cut(s)	571, 847, 876
BspQI	GCTCTTC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	155, 621
BsrFI	RCCGGY	2 cut(s)	168, 187
BsrI	ACTGG	1 cut(s)	958
BssAI	RCCGGY	2 cut(s)	168, 187
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	5 cut(s)	328, 563, 839, 860, 881
BssSI	CACGAG	1 cut(s)	929
BssT1I	CCWWGG	1 cut(s)	559
Bst2BI	CACGAG	1 cut(s)	929
Bst4CI	ACNGT	3 cut(s)	262, 527, 812
Bst6I	CTCTTC	2 cut(s)	234, 957
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstC8I	GCNNGC	4 cut(s)	155, 435, 469, 818
BstDEI	CTNAG	4 cut(s)	132, 316, 438, 620
BstDSI	CCRYGG	1 cut(s)	559
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	940
BstKTI	GATC	5 cut(s)	331, 566, 842, 863, 884
BstMAI	GTCTC	1 cut(s)	918
BstMBI	GATC	5 cut(s)	328, 563, 839, 860, 881
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 477
BstNSI	RCATGY	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	492, 638
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	4 cut(s)	563, 839, 860, 881
BstYI	RGATCY	4 cut(s)	563, 839, 860, 881
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	454, 558, 583
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	940
Cac8I	GCNNGC	4 cut(s)	155, 435, 469, 818
CciI	TCATGA	1 cut(s)	372
Cfr10I	RCCGGY	2 cut(s)	168, 187
Cfr13I	GGNCC	4 cut(s)	452, 556, 581, 871
Csp6I	GTAC	4 cut(s)	291, 297, 499, 523
CviAII	CATG	8 cut(s)	20, 373, 389, 508, 560, 630, 748, 800
CviQI	GTAC	4 cut(s)	291, 297, 499, 523
DdeI	CTNAG	4 cut(s)	132, 316, 438, 620
DpnI	GATC	5 cut(s)	330, 565, 841, 862, 883
DpnII	GATC	5 cut(s)	328, 563, 839, 860, 881
DraI	TTTAAA	1 cut(s)	850
Eam1104I	CTCTTC	2 cut(s)	234, 957
EarI	CTCTTC	2 cut(s)	234, 957
Eco130I	CCWWGG	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	682
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	918
FaeI	CATG	8 cut(s)	23, 376, 392, 511, 563, 633, 751, 803
FaqI	GGGAC	1 cut(s)	909
FatI	CATG	8 cut(s)	19, 372, 388, 507, 559, 629, 747, 799
FauNDI	CATATG	2 cut(s)	325, 549
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	481, 612, 652
FokI	GGATG	1 cut(s)	947
Fsp4HI	GCNGC	3 cut(s)	481, 612, 652
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	3 cut(s)	481, 612, 652
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	454, 558, 583
HapII	CCGG	2 cut(s)	169, 188
Hin1II	CATG	8 cut(s)	23, 376, 392, 511, 563, 633, 751, 803
HinfI	GANTC	3 cut(s)	349, 442, 587
HpaII	CCGG	2 cut(s)	169, 188
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	174, 313
Hpy188I	TCNGA	8 cut(s)	133, 319, 333, 441, 568, 701, 844, 961
Hpy188III	TCNNGA	3 cut(s)	373, 917, 929
Hpy8I	GTNNAC	2 cut(s)	174, 313
HpyAV	CCTTC	5 cut(s)	90, 215, 334, 499, 934
HpyCH4III	ACNGT	3 cut(s)	262, 527, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 477
HpyF3I	CTNAG	4 cut(s)	132, 316, 438, 620
Hsp92II	CATG	8 cut(s)	23, 376, 392, 511, 563, 633, 751, 803
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	328, 563, 839, 860, 881
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	476, 734
LpnPI	CCDG	8 cut(s)	182, 192, 201, 291, 447, 597, 621, 939
Lsp1109I	GCAGC	2 cut(s)	492, 638
LweI	GCATC	3 cut(s)	193, 447, 534
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	3 cut(s)	256, 537, 949
MalI	GATC	5 cut(s)	330, 565, 841, 862, 883
MboI	GATC	5 cut(s)	328, 563, 839, 860, 881
MboII	GAAGA	5 cut(s)	38, 108, 212, 251, 371
MflI	RGATCY	4 cut(s)	563, 839, 860, 881
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	2 cut(s)	34, 461
MnlI	CCTC	7 cut(s)	63, 94, 168, 615, 913, 925, 958
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	5 cut(s)	164, 402, 666, 780, 849
MslI	CAYNNNNRTG	2 cut(s)	748, 933
MspI	CCGG	2 cut(s)	169, 188
Mva1269I	GAATGC	1 cut(s)	950
MwoI	GCNNNNNNNGC	2 cut(s)	154, 477
NcoI	CCATGG	1 cut(s)	559
NdeI	CATATG	2 cut(s)	325, 549
NdeII	GATC	5 cut(s)	328, 563, 839, 860, 881
NlaIII	CATG	8 cut(s)	23, 376, 392, 511, 563, 633, 751, 803
NlaIV	GGNNCC	1 cut(s)	557
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	1 cut(s)	511
PagI	TCATGA	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PctI	GAATGC	1 cut(s)	950
PfeI	GAWTC	3 cut(s)	349, 442, 587
PkrI	GCNGC	3 cut(s)	482, 613, 653
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	557
PspPI	GGNCC	4 cut(s)	452, 556, 581, 871
PsuI	RGATCY	4 cut(s)	563, 839, 860, 881
RsaI	GTAC	4 cut(s)	292, 298, 500, 524
RsaNI	GTAC	4 cut(s)	291, 297, 499, 523
RseI	CAYNNNNRTG	2 cut(s)	748, 933
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	5 cut(s)	164, 402, 666, 780, 849
SatI	GCNGC	3 cut(s)	481, 612, 652
Sau3AI	GATC	5 cut(s)	328, 563, 839, 860, 881
Sau96I	GGNCC	4 cut(s)	452, 556, 581, 871
ScaI	AGTACT	3 cut(s)	292, 298, 524
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	3 cut(s)	193, 447, 534
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	871
SmiMI	CAYNNNNRTG	2 cut(s)	748, 933
SmlI	CTYRAG	4 cut(s)	353, 645, 866, 917
SmoI	CTYRAG	4 cut(s)	353, 645, 866, 917
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	2 cut(s)	34, 461
SsiI	CCGC	2 cut(s)	612, 837
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	3 cut(s)	262, 527, 812
TasI	AATT	2 cut(s)	34, 461
TatI	WGTACW	3 cut(s)	290, 296, 522
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	3 cut(s)	349, 442, 587
Tru1I	TTAA	5 cut(s)	164, 402, 666, 780, 849
Tru9I	TTAA	5 cut(s)	164, 402, 666, 780, 849
TseI	GCWGC	2 cut(s)	480, 651
TspDTI	ATGAA	5 cut(s)	81, 377, 389, 736, 816
TspGWI	ACGGA	2 cut(s)	191, 747
VpaK11BI	GGWCC	1 cut(s)	871
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	3 cut(s)	292, 298, 524
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.