Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0018005

Physical Location & Seq

Genomic Coordinates Reverse (-)

14135453 .. 14138079

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGAGCCGACTACTCCGCCCCCACCATCCGCGCCACCGTCGTTCAAGCCTCCACCGTCTTCTACGACACCCCTGCCACTCTAGATAAGGCTGAGAGATTATTGGCTGAAGCGGCCAGGTACGGGGCCCAGCTGGTTGTGTTCCCCGAAGCATTTGTGGGTGGTTATCCCCGTGGGTCGAATTTTGGCATTGTCATTGGGAACAGAACAGCTAAGGGTAAAGAAGAATTCAGAAAGTATCATGCTGCAGCCATTAATGTGCCTGGTCCTGAAGTTGATCGATTGGCAGCAATGGCTGGAAAGTACAAGGTATTCATGGTAATGGGTGTGATAGAGAGAGAGATGGATATACACTCTATTGCACTATTCTGTTTTTTGATTCTCAAGGTTGCTATTTGGAAAGCACTGAAAAGTGATGCCCACAGCACTGGAGCGGATCATTTGGGGATTTGGAGACGGATCTACAATTCCTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00627 ko00643 ko00910 ko01100 ko01110 ko01120 map00380 map00460 map00627 map00643 map00910 map01100 map01110 map01120

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

160

Amino Acids

17.43

Weight (kDa)

9.12

Isoelectric Point (pI)

19.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25810 FvH4_3g25810 FvH4_3g25810
pyrus_communis	pycom11g14250
rosa_laevigata	RLG00000001790 RLG00000005908 RLG00000029485
rosa_roxburghii	Rroxscaffold_3G00241990
rosa_samantha	Rh1CG027800 Rh5DG332500
rosa_wichuraiana	Rw6G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	434
AccII	CGCG	1 cut(s)	33
AciI	CCGC	4 cut(s)	18, 31, 113, 434
AclWI	GGATC	2 cut(s)	444, 467
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	181, 227
AcuI	CTGAAG	2 cut(s)	129, 291
AfaI	GTAC	2 cut(s)	122, 305
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	116, 262
AluBI	AGCT	2 cut(s)	133, 212
AluI	AGCT	2 cut(s)	133, 212
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	2 cut(s)	444, 467
AoxI	GGCC	2 cut(s)	114, 126
ApaI	GGGCCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	245, 248, 287
ApoI	RAATTY	2 cut(s)	181, 227
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	126, 127, 266
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	232, 260, 299
BccI	CCATC	2 cut(s)	35, 337
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	2 cut(s)	118, 264
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	4 cut(s)	114, 246, 249, 288
BlsI	GCNGC	4 cut(s)	115, 247, 250, 289
Bme1390I	CCNGG	2 cut(s)	118, 264
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	126, 127, 266
BmiI	GGNNCC	3 cut(s)	7, 127, 128
BmrFI	CCNGG	2 cut(s)	118, 264
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	118, 264
BseCI	ATCGAT	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	433
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	232, 260, 299
BseYI	CCCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	116, 128
BshVI	ATCGAT	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	448
BsmBI	CGTCTC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	116, 128
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	277, 436, 459
BspACI	CCGC	4 cut(s)	18, 31, 113, 434
BspANI	GGCC	2 cut(s)	116, 128
BspCNI	CTCAG	1 cut(s)	85
BspDI	ATCGAT	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	7, 127, 128
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	2 cut(s)	444, 467
BsrBI	CCGCTC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	3 cut(s)	277, 436, 459
Bst2UI	CCWGG	2 cut(s)	118, 264
Bst4CI	ACNGT	2 cut(s)	40, 58
BstDEI	CTNAG	2 cut(s)	93, 213
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	280, 439, 462
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	3 cut(s)	277, 436, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 293
BstNI	CCWGG	2 cut(s)	118, 264
BstSCI	CCNGG	2 cut(s)	116, 262
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	232, 260, 299
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	459
Bsu15I	ATCGAT	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	116, 128
BsuTUI	ATCGAT	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	404, 426
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	126, 127, 266
ClaI	ATCGAT	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	121, 304
CviAII	CATG	2 cut(s)	242, 316
CviQI	GTAC	2 cut(s)	121, 304
DdeI	CTNAG	2 cut(s)	93, 213
DpnI	GATC	3 cut(s)	279, 438, 461
DpnII	GATC	3 cut(s)	277, 436, 459
EaeI	YGGCCR	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	129, 291
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	116, 262
EcoT38I	GRGCYC	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	448
FaeI	CATG	2 cut(s)	245, 319
FaiI	YATR	3 cut(s)	243, 317, 350
FatI	CATG	2 cut(s)	241, 315
Fnu4HI	GCNGC	4 cut(s)	114, 246, 249, 288
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	114, 246, 249, 288
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	4 cut(s)	114, 246, 249, 288
GsaI	CCCAGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	116, 128
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	245, 319
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	2 cut(s)	83, 269
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	40, 58
HpyCH4V	TGCA	2 cut(s)	248, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 293
HpyF3I	CTNAG	2 cut(s)	93, 213
Hsp92II	CATG	2 cut(s)	245, 319
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	277, 436, 459
LmnI	GCTCC	2 cut(s)	5, 431
Lsp1109I	GCAGC	3 cut(s)	232, 260, 299
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	83
MalI	GATC	3 cut(s)	279, 438, 461
MbiI	CCGCTC	1 cut(s)	434
MboI	GATC	3 cut(s)	277, 436, 459
MboII	GAAGA	2 cut(s)	52, 236
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	3 cut(s)	181, 227, 466
MnlI	CCTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	2 cut(s)	257, 320
MspA1I	CMGCKG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	118, 264
MvaI	CCWGG	2 cut(s)	118, 264
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	113, 293
NdeII	GATC	3 cut(s)	277, 436, 459
NlaIII	CATG	2 cut(s)	245, 319
NlaIV	GGNNCC	3 cut(s)	7, 127, 128
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	115, 247, 250, 289
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	116, 262
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	116, 262
PspN4I	GGNNCC	3 cut(s)	7, 127, 128
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	3 cut(s)	126, 127, 266
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	2 cut(s)	122, 305
RsaNI	GTAC	2 cut(s)	121, 304
RseI	CAYNNNNRTG	2 cut(s)	257, 320
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	4 cut(s)	114, 246, 249, 288
Sau3AI	GATC	3 cut(s)	277, 436, 459
Sau96I	GGNCC	3 cut(s)	126, 127, 266
ScrFI	CCNGG	2 cut(s)	118, 264
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	5 cut(s)	122, 135, 214, 312, 390
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	257, 320
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	181, 227, 466
SsiI	CCGC	4 cut(s)	18, 31, 113, 434
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	116, 262
TaaI	ACNGT	2 cut(s)	40, 58
TaqI	TCGA	2 cut(s)	179, 280
TasI	AATT	3 cut(s)	181, 227, 466
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	411, 433
TseI	GCWGC	3 cut(s)	245, 248, 287
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	2 cut(s)	411, 433
VpaK11BI	GGWCC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	2 cut(s)	181, 227
XbaI	TCTAGA	1 cut(s)	82
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.