Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0018005

Physical Location & Seq

Genomic Coordinates Forward (+)

41516788 .. 41517730

Gene Structure 943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGATCGCAGCGGGTTGTGTTTCCGGAAGCGTTTCTGGGAGGGTATCCACGCGGCTCCAATTTCAGGGTTGCGATTGGGAACAGAACTGCCAAGGGGAAAGAAGAGTTCTGAATGTATCATGCTGCAGCCATTAATGTGCCTGGCTTATGTCCAGCAACTAGAAACAAGCTGTTTAAAACTGGTGCAACTGGAGCTGGAACTTGACAAGACTGGAAAACAGGTAGCCTATGGAGGCAGTTCATCCTTAATTTGGTGGGGGGACTGGGCTAGAATTTGCTTTTGGGAGGGTGTCTTTGTAGGTGAGACTCGCATTTCATCGCCCATTTCCAATTTGTATAGGTCTGTGTCCATCTACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

120

Amino Acids

13.59

Weight (kDa)

8.66

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25810 FvH4_3g25810 FvH4_3g25810
pyrus_communis	pycom11g14250
rosa_laevigata	RLG00000001790 RLG00000005908 RLG00000029485
rosa_roxburghii	Rroxscaffold_3G00241990
rosa_samantha	Rh1CG027800 Rh5DG332500
rosa_wichuraiana	Rw6G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	24
AciI	CCGC	2 cut(s)	12, 53
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	65, 252
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	265, 297
AluBI	AGCT	2 cut(s)	171, 196
AluI	AGCT	2 cut(s)	171, 196
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	9, 124, 127
ApoI	RAATTY	1 cut(s)	273
AseI	ATTAAT	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	21, 111, 139
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	2 cut(s)	161, 270
BfmI	CTRYAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	10, 54, 125, 128
BlsI	GCNGC	4 cut(s)	11, 55, 126, 129
Bme1390I	CCNGG	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	143
BmrI	ACTGGG	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 252
Bse1I	ACTGG	4 cut(s)	186, 195, 217, 269
BseAI	TCCGGA	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	2 cut(s)	65, 252
BseNI	ACTGG	4 cut(s)	186, 195, 217, 269
BseXI	GCAGC	3 cut(s)	21, 111, 139
Bsh1236I	CGCG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	65, 252
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	2 cut(s)	12, 53
BspEI	TCCGGA	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	4 cut(s)	186, 195, 217, 269
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	21, 111, 139
BsuI	GTATCC	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	242
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	7 cut(s)	56, 130, 146, 171, 196, 227, 269
CviKI_1	RGCY	7 cut(s)	56, 130, 146, 171, 196, 227, 269
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraI	TTTAAA	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	1 cut(s)	124
FaiI	YATR	4 cut(s)	122, 150, 231, 339
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	10, 54, 125, 128
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	4 cut(s)	10, 54, 125, 128
FspBI	CTAG	2 cut(s)	161, 270
GluI	GCNGC	4 cut(s)	10, 54, 125, 128
GsuI	CTGGAG	1 cut(s)	212
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	127, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	124
Kpn2I	TCCGGA	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	61, 193
Lsp1109I	GCAGC	3 cut(s)	21, 111, 139
MaeI	CTAG	2 cut(s)	161, 270
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	115
MluCI	AATT	4 cut(s)	60, 249, 273, 331
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	3 cut(s)	34, 227, 280
MroI	TCCGGA	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	134, 176, 248
MslI	CAYNNNNRTG	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	11, 55, 126, 129
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PshBI	ATTAAT	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	136
SaqAI	TTAA	3 cut(s)	134, 176, 248
SatI	GCNGC	4 cut(s)	10, 54, 125, 128
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	5 cut(s)	173, 198, 225, 304, 344
SfcI	CTRYAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	136
Sse9I	AATT	4 cut(s)	60, 249, 273, 331
SsiI	CCGC	2 cut(s)	12, 53
SspMI	CTAG	2 cut(s)	161, 270
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	92
TasI	AATT	4 cut(s)	60, 249, 273, 331
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	3 cut(s)	134, 176, 248
Tru9I	TTAA	3 cut(s)	134, 176, 248
TseI	GCWGC	3 cut(s)	9, 124, 127
TspDTI	ATGAA	2 cut(s)	231, 306
VspI	ATTAAT	1 cut(s)	134
XapI	RAATTY	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	161, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.