Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018005

Physical Location & Seq

Genomic Coordinates Reverse (-)

5573038 .. 5582004

Gene Structure 8967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTGGTTCTTGTTTAGTTATGAAATTCTGAGTCTGTTGGTGGATGAGGATTTGAGATATGATAAGGCTGAGAGATTGTTGGCTGAAGCAGAGGGTATAAATCGCAGCGGGTTGTGTTTCCGGAAGCGTTTCTGGGAGGGTATCCACGCGGCTCCAATTTCAGGGTTGCGATTGGGAACAGAACTGCCAAGGGGAAAGAAGAGTTCCGAAAGTATCATGCCGCAGCCATTAATGTGCCTGGCTTATGTCCAGCAACTAGAAACAAGCTGTTTAAAACTGGTGCAACTGGAGCTGGAACTTAACAGGACTGGAAAACAGGTAGCCTATGGAGGCAGTTCATCCTTAATTTGGTGGGAGGACTGGGCTAGAATTTGCTTTTGGAAGGGTGTCTTTGTAGGTGAGACTCGCATTTCATTGCCCATTTCCAATTTGTATAGGGGCATCTTCTGGATGAACAGTGCCGCTCTATGTAGAGATGCTCTGAAATCCTCTTGTTCCAGGTACTTTGCAAAAAAAAAAACCAAAAATCAAGAGGGAGTTGTGGATCTCTGGACTGGTATTGGACCTAACATTGCTCGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGACACTTTTGAAAATTCCCGGGTTTAAGGACAATGTTGTCACTCATCTTTTTGCTGGTCTGGGGGCAGATTTCTTTGCCGTCTGCATTGGCTCACCAGTTGATGTGGTAATCTATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

249

Amino Acids

28.01

Weight (kDa)

8.63

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	172 - 214	2.4e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25810 FvH4_3g25810 FvH4_3g25810
pyrus_communis	pycom11g14250
rosa_laevigata	RLG00000001790 RLG00000005908 RLG00000029485
rosa_roxburghii	Rroxscaffold_3G00241990
rosa_samantha	Rh1CG027800 Rh5DG332500
rosa_wichuraiana	Rw6G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
AccBSI	CCGCTC	1 cut(s)	464
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	4 cut(s)	108, 149, 221, 462
AclWI	GGATC	1 cut(s)	552
AcsI	RAATTY	3 cut(s)	24, 369, 642
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	2 cut(s)	161, 348
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	237, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	2 cut(s)	267, 292
AluI	AGCT	2 cut(s)	267, 292
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	647
Aor13HI	TCCGGA	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	105, 223, 596
ApoI	RAATTY	3 cut(s)	24, 369, 642
AseI	ATTAAT	2 cut(s)	230, 591
Asp700I	GAANNNNTTC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	563
AsuC2I	CCSGG	2 cut(s)	648, 649
AsuHPI	GGTGA	2 cut(s)	410, 714
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	563
BbvI	GCAGC	3 cut(s)	117, 235, 583
BceAI	ACGGC	1 cut(s)	692
BciT130I	CCWGG	2 cut(s)	239, 499
BciVI	GTATCC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	2 cut(s)	648, 649
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	3 cut(s)	257, 366, 605
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	6 cut(s)	106, 150, 221, 224, 462, 597
BlsI	GCNGC	6 cut(s)	107, 151, 222, 225, 463, 598
Bme1390I	CCNGG	4 cut(s)	239, 499, 648, 649
Bme18I	GGWCC	1 cut(s)	563
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	4 cut(s)	239, 499, 648, 649
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	2 cut(s)	450, 466
BmuI	ACTGGG	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	648, 649
BsaJI	CCNNGG	2 cut(s)	188, 647
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 348
Bse1I	ACTGG	7 cut(s)	282, 291, 313, 365, 559, 609, 725
Bse3DI	GCAATG	2 cut(s)	413, 570
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	239, 499
BseDI	CCNNGG	2 cut(s)	188, 647
BseGI	GGATG	3 cut(s)	49, 338, 456
BseLI	CCNNNNNNNGG	2 cut(s)	161, 348
BseMI	GCAATG	2 cut(s)	413, 570
BseMII	CTCAG	2 cut(s)	20, 60
BseNI	ACTGG	7 cut(s)	282, 291, 313, 365, 559, 609, 725
BseXI	GCAGC	3 cut(s)	117, 235, 583
Bsh1236I	CGCG	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	121, 648
BslI	CCNNNNNNNGG	2 cut(s)	161, 348
BsmAI	GTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	647
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	544, 616
BspACI	CCGC	4 cut(s)	108, 149, 221, 462
BspCNI	CTCAG	2 cut(s)	21, 61
BspEI	TCCGGA	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	552
BsrBI	CCGCTC	1 cut(s)	464
BsrDI	GCAATG	2 cut(s)	413, 570
BsrI	ACTGG	7 cut(s)	282, 291, 313, 365, 559, 609, 725
BssECI	CCNNGG	2 cut(s)	188, 647
BssMI	GATC	2 cut(s)	544, 616
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	239, 499
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	29, 69
BstF5I	GGATG	3 cut(s)	49, 338, 456
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	2 cut(s)	547, 619
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	544, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 581, 605
BstNI	CCWGG	2 cut(s)	239, 499
BstSCI	CCNGG	4 cut(s)	237, 497, 646, 647
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	117, 235, 583
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	49, 338, 456
BtsIMutI	CAGTG	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	563
Cfr9I	CCCGGG	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	2 cut(s)	29, 69
DpnI	GATC	2 cut(s)	546, 618
DpnII	GATC	2 cut(s)	544, 616
DraI	TTTAAA	1 cut(s)	273
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	647
EcoRII	CCWGG	2 cut(s)	237, 497
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	1 cut(s)	220
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	6 cut(s)	106, 150, 221, 224, 462, 597
FokI	GGATG	3 cut(s)	56, 325, 463
Fsp4HI	GCNGC	6 cut(s)	106, 150, 221, 224, 462, 597
FspBI	CTAG	3 cut(s)	257, 366, 605
GluI	GCNGC	6 cut(s)	106, 150, 221, 224, 462, 597
GsuI	CTGGAG	1 cut(s)	308
HapII	CCGG	2 cut(s)	121, 648
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	2 cut(s)	31, 403
HpaII	CCGG	2 cut(s)	121, 648
HphI	GGTGA	2 cut(s)	410, 714
Hpy188I	TCNGA	3 cut(s)	30, 208, 483
Hpy188III	TCNNGA	4 cut(s)	121, 448, 530, 550
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	3 cut(s)	283, 509, 714
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 581, 605
HpyF3I	CTNAG	2 cut(s)	29, 69
Hsp92II	CATG	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	544, 616
LmnI	GCTCC	2 cut(s)	157, 289
Lsp1109I	GCAGC	3 cut(s)	117, 235, 583
LweI	GCATC	2 cut(s)	450, 466
MaeI	CTAG	3 cut(s)	257, 366, 605
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	2 cut(s)	546, 618
MbiI	CCGCTC	1 cut(s)	464
MboI	GATC	2 cut(s)	544, 616
MboII	GAAGA	2 cut(s)	211, 436
MflI	RGATCY	1 cut(s)	544
MluCI	AATT	6 cut(s)	24, 156, 345, 369, 427, 642
MlyI	GAGTC	2 cut(s)	40, 397
MnlI	CCTC	7 cut(s)	40, 85, 130, 323, 349, 499, 526
MroI	TCCGGA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	6 cut(s)	230, 272, 300, 344, 591, 654
MslI	CAYNNNNRTG	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	2 cut(s)	121, 648
MspR9I	CCNGG	4 cut(s)	239, 499, 648, 649
MvaI	CCWGG	2 cut(s)	239, 499
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	289, 581, 605
NciI	CCSGG	2 cut(s)	648, 649
NdeII	GATC	2 cut(s)	544, 616
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	128
PkrI	GCNGC	6 cut(s)	107, 151, 222, 225, 463, 598
PleI	GAGTC	2 cut(s)	39, 397
PpsI	GAGTC	2 cut(s)	39, 397
PshBI	ATTAAT	2 cut(s)	230, 591
Psp6I	CCWGG	2 cut(s)	237, 497
PspGI	CCWGG	2 cut(s)	237, 497
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	232
SaqAI	TTAA	6 cut(s)	230, 272, 300, 344, 591, 654
SatI	GCNGC	6 cut(s)	106, 150, 221, 224, 462, 597
Sau3AI	GATC	2 cut(s)	544, 616
Sau96I	GGNCC	1 cut(s)	563
SchI	GAGTC	2 cut(s)	40, 397
ScrFI	CCNGG	4 cut(s)	239, 499, 648, 649
SetI	ASST	6 cut(s)	269, 294, 321, 400, 503, 568
SfaNI	GCATC	2 cut(s)	450, 466
SinI	GGWCC	1 cut(s)	563
SmaI	CCCGGG	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	232
Sse9I	AATT	6 cut(s)	24, 156, 345, 369, 427, 642
SsiI	CCGC	4 cut(s)	108, 149, 221, 462
SspMI	CTAG	3 cut(s)	257, 366, 605
StyD4I	CCNGG	4 cut(s)	237, 497, 646, 647
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	458
TasI	AATT	6 cut(s)	24, 156, 345, 369, 427, 642
TauI	GCSGC	3 cut(s)	152, 223, 464
Tru1I	TTAA	6 cut(s)	230, 272, 300, 344, 591, 654
Tru9I	TTAA	6 cut(s)	230, 272, 300, 344, 591, 654
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	3 cut(s)	105, 223, 596
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	4 cut(s)	36, 327, 402, 467
TspMI	CCCGGG	1 cut(s)	647
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	563
VspI	ATTAAT	2 cut(s)	230, 591
XapI	RAATTY	3 cut(s)	24, 369, 642
XmaI	CCCGGG	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	3 cut(s)	257, 366, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.