Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007414

Physical Location & Seq

Genomic Coordinates Forward (+)

14715190 .. 14718798

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGCTTTCACTGGGAATGGGAAGAGAGAGAAAGAAGGTGGTAGTGGTGGGCGGTGGTGTTGCTGGCTCCCTTCTTGCTAAATCTCTCCAGTTCGTTGCTGATTTCACTCTCATTGATGAGAAGGAATATTTTGAGATTCCATGGACAAGCTTAAGGACCATGGTTGAGCCAACATTTGGGGAGAGATCGATTATCAACCATAGAGATTATCTCACCAATGGCCAACTTATTTCATCCAGAGCAATCAATGTCACAGACACTGAAGTGCTGACAGCAGAGGGCCGTCTAATTCCCTACGATTATCTTGTCATTGCCACTGGTCACTCAGATCGTGTTCCCAAAACTAAGACTGCGAGGCTTAATCAATTCCAAGAAGAGAATCAAAAGATAAGGTCAGCTAATTCCATTTTGATTGTTGGAGGGGGCCCTACTGGTGTAGAACTCGCTGGAGAAATTGCTGTTGATTTCCCGGATAAGAAAGTGACTCTGGTGCACACTGGCACAAGGTTGTTGGAATTCGTGGGACCAAAAGCTGCAGACAAGGCTCTGAAGTGGCTTAAATCCAGGAAAGTTGAAGTGATATTGGAGCGATCAGTCGATTTAGATAATATCTCAGATGGATGCAAAACATATAAAACTTCAGAGGGAGAAACATTGACAGCAGACTGTCATTTTCTATGCACGGGCAAGCGTGTGGGTTCAGCATGGCTCAAAGAAACAGTTTTGAAGAATTGCTTGGATGTTAACGGGAGGTTGATGGTAGATGCGAATCTTAGAGTCAAAGGTCGAAAGAACACCTTTGCCGTTGGAGACATTACTAATATTGCGGAAATCAAACAAGGGTATCTGGCGCAAAAACAGGCGTTGGTGGCCGCAAAGAACATAAAGCTATCTCTCGCAGGCGGAAGAGAGAGTAAAATGGAAGCTTACGAACCTCATGCGATAATGGCAATTGTTACACTTGGGAGGAAGCATGGGGTTGCACAGTTCCCCATCACGACCATTGGCGGCCGCATTGCGGGACTGATCAAATCTAAAGATCTTTTCGTGGGGAAGACGAGGAAGCAGCTGGGCCTCGAACCTTACATTTTGGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

368

Amino Acids

40.26

Weight (kDa)

9.21

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	12 - 289	3.2e-34	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	137 - 200	8.7e-08	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44190 AT3G44190 AT5G22140 AT5G22140
fragaria_vesca	FvH4_3g26670 FvH4_3g26670 FvH4_3g26670
malus_domestica	MD00G1071200.v1.1 MD02G1258500.v1.1
prunus_persica	Prupe.2G072100_v2.0.a1 Prupe.2G072100_v2.0.a1 Prupe.6G143400_v2.0.a1
pyrus_communis	pycom02g21970 pycom11g14620
rosa_chinensis	RchiOBHm_Chr5g0048121
rosa_laevigata	RLG00000034499
rosa_multiflora	Rmu_sc0001408.1_g000021
rosa_roxburghii	Rroxscaffold_1G00033780
rosa_rugosa	Rorug05G0236700 Rorug05G0236800
rosa_samantha	Rh5AG315900 Rh5BG326200 Rh5CG352700 Rh5DG337400
rosa_wichuraiana	Rw5G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AciI	CCGC	7 cut(s)	54, 830, 876, 906, 1011, 1015, 1022
AcoI	YGGCCR	3 cut(s)	223, 873, 1012
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	3 cut(s)	285, 572, 627
AfiI	CCNNNNNNNGG	2 cut(s)	179, 1021
AflII	CTTAAG	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	578, 730
AjnI	CCWGG	1 cut(s)	566
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	7 cut(s)	7, 153, 401, 536, 892, 929, 1072
AluI	AGCT	7 cut(s)	7, 153, 401, 536, 892, 929, 1072
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	807
Alw44I	GTGCAC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	6 cut(s)	223, 283, 427, 873, 1012, 1075
ApaI	GGGCCC	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	536, 1069
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	856
AspS9I	GGNCC	6 cut(s)	159, 283, 427, 428, 527, 1075
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	159, 527
BaeGI	GKGCMC	2 cut(s)	431, 498
BaeI	ACNNNNGTAYC	2 cut(s)	830, 863
BalI	TGGCCA	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	1064
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	523, 1081
BccI	CCATC	3 cut(s)	614, 754, 1004
BceAI	ACGGC	2 cut(s)	270, 791
BcgI	CGANNNNNNTGC	2 cut(s)	923, 957
BciT130I	CCWGG	1 cut(s)	568
BclI	TGATCA	1 cut(s)	1029
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	807
BfmI	CTRYAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	154
BglII	AGATCT	1 cut(s)	1042
BisI	GCNGC	5 cut(s)	537, 876, 1012, 1015, 1070
BlsI	GCNGC	5 cut(s)	538, 877, 1013, 1016, 1071
Bme1390I	CCNGG	2 cut(s)	473, 568
Bme18I	GGWCC	2 cut(s)	159, 527
BmgT120I	GGNCC	6 cut(s)	159, 283, 427, 428, 527, 1075
BmiI	GGNNCC	4 cut(s)	70, 428, 429, 528
BmrFI	CCNGG	2 cut(s)	473, 568
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	614, 757
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	1064
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpmI	CTGGAG	2 cut(s)	74, 471
BpuMI	CCSGG	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	2 cut(s)	143, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 1021
Bse1I	ACTGG	5 cut(s)	18, 91, 325, 439, 505
Bse3DI	GCAATG	2 cut(s)	312, 1017
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	568
BseCI	ATCGAT	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	143, 162
BseGI	GGATG	3 cut(s)	236, 629, 748
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	2 cut(s)	179, 1021
BseMI	GCAATG	2 cut(s)	312, 1017
BseMII	CTCAG	2 cut(s)	342, 630
BseNI	ACTGG	5 cut(s)	18, 91, 325, 439, 505
BseSI	GKGCMC	2 cut(s)	431, 498
BseX3I	CGGCCG	1 cut(s)	1012
BseXI	GCAGC	2 cut(s)	523, 1081
BseYI	CCCAGC	1 cut(s)	1072
Bsh1285I	CGRYCG	1 cut(s)	1015
BshFI	GGCC	6 cut(s)	225, 285, 429, 875, 1014, 1077
BshVI	ATCGAT	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	1015
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	473
BslFI	GGGAC	2 cut(s)	540, 1038
BslI	CCNNNNNNNGG	2 cut(s)	179, 1021
BsmAI	GTCTC	1 cut(s)	807
BsmFI	GGGAC	2 cut(s)	540, 1038
BsnI	GGCC	6 cut(s)	225, 285, 429, 875, 1014, 1077
Bsp120I	GGGCCC	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	431, 498
Bsp143I	GATC	5 cut(s)	188, 331, 593, 1029, 1042
Bsp19I	CCATGG	2 cut(s)	143, 162
BspACI	CCGC	7 cut(s)	54, 830, 876, 906, 1011, 1015, 1022
BspANI	GGCC	6 cut(s)	225, 285, 429, 875, 1014, 1077
BspCNI	CTCAG	2 cut(s)	341, 629
BspDI	ATCGAT	1 cut(s)	191
BspLI	GGNNCC	4 cut(s)	70, 428, 429, 528
BspMAI	CTGCAG	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	154
BsrDI	GCAATG	2 cut(s)	312, 1017
BsrI	ACTGG	5 cut(s)	18, 91, 325, 439, 505
BssECI	CCNNGG	2 cut(s)	143, 162
BssMI	GATC	5 cut(s)	188, 331, 593, 1029, 1042
BssT1I	CCWWGG	2 cut(s)	143, 162
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	3 cut(s)	671, 724, 990
Bst6I	CTCTTC	3 cut(s)	19, 372, 904
BstAFI	CTTAAG	1 cut(s)	154
BstC8I	GCNNGC	3 cut(s)	67, 692, 904
BstDEI	CTNAG	4 cut(s)	328, 348, 616, 776
BstDSI	CCRYGG	2 cut(s)	143, 162
BstF5I	GGATG	3 cut(s)	236, 629, 748
BstHHI	GCGC	1 cut(s)	856
BstKTI	GATC	5 cut(s)	191, 334, 596, 1032, 1045
BstMAI	GTCTC	1 cut(s)	807
BstMBI	GATC	5 cut(s)	188, 331, 593, 1029, 1042
BstMCI	CGRYCG	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	3 cut(s)	545, 872, 950
BstNI	CCWGG	1 cut(s)	568
BstSCI	CCNGG	2 cut(s)	471, 566
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	2 cut(s)	431, 498
BstV1I	GCAGC	2 cut(s)	523, 1081
BstV2I	GAAGAC	1 cut(s)	1064
BstX2I	RGATCY	1 cut(s)	1042
BstYI	RGATCY	1 cut(s)	1042
BstZI	CGGCCG	1 cut(s)	1012
Bsu15I	ATCGAT	1 cut(s)	191
BsuRI	GGCC	6 cut(s)	225, 285, 429, 875, 1014, 1077
BsuTUI	ATCGAT	1 cut(s)	191
BtgI	CCRYGG	2 cut(s)	143, 162
BtsCI	GGATG	3 cut(s)	236, 629, 748
BtsIMutI	CAGTG	4 cut(s)	11, 261, 318, 498
Cac8I	GCNNGC	3 cut(s)	67, 692, 904
CaiI	CAGNNNCTG	1 cut(s)	263
CciNI	GCGGCCGC	1 cut(s)	1012
CfoI	GCGC	1 cut(s)	856
Cfr13I	GGNCC	6 cut(s)	159, 283, 427, 428, 527, 1075
ClaI	ATCGAT	1 cut(s)	191
CviAII	CATG	5 cut(s)	144, 163, 708, 941, 977
DdeI	CTNAG	4 cut(s)	328, 348, 616, 776
DpnI	GATC	5 cut(s)	190, 333, 595, 1031, 1044
DpnII	GATC	5 cut(s)	188, 331, 593, 1029, 1042
EaeI	YGGCCR	3 cut(s)	223, 873, 1012
EagI	CGGCCG	1 cut(s)	1012
Eam1104I	CTCTTC	3 cut(s)	19, 372, 904
EarI	CTCTTC	3 cut(s)	19, 372, 904
EciI	GGCGGA	1 cut(s)	921
EclXI	CGGCCG	1 cut(s)	1012
Eco130I	CCWWGG	2 cut(s)	143, 162
Eco24I	GRGCYC	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	159, 527
Eco52I	CGGCCG	1 cut(s)	1012
Eco57I	CTGAAG	3 cut(s)	285, 572, 627
EcoO109I	RGGNCCY	2 cut(s)	427, 428
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	566
EcoT14I	CCWWGG	2 cut(s)	143, 162
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	2 cut(s)	143, 162
FaeI	CATG	5 cut(s)	147, 166, 711, 944, 980
FalI	AAGNNNNNCTT	4 cut(s)	722, 754, 785, 817
FaqI	GGGAC	2 cut(s)	540, 1038
FatI	CATG	5 cut(s)	143, 162, 707, 940, 976
FauI	CCCGC	1 cut(s)	1015
FbaI	TGATCA	1 cut(s)	1029
Fnu4HI	GCNGC	5 cut(s)	537, 876, 1012, 1015, 1070
FokI	GGATG	3 cut(s)	223, 636, 755
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	5 cut(s)	537, 876, 1012, 1015, 1070
GlaI	GCGC	1 cut(s)	855
GluI	GCNGC	5 cut(s)	537, 876, 1012, 1015, 1070
GsaI	CCCAGC	1 cut(s)	1076
GsuI	CTGGAG	2 cut(s)	74, 471
HaeIII	GGCC	6 cut(s)	225, 285, 429, 875, 1014, 1077
HapII	CCGG	1 cut(s)	473
HhaI	GCGC	1 cut(s)	856
Hin1II	CATG	5 cut(s)	147, 166, 711, 944, 980
Hin6I	GCGC	1 cut(s)	854
HinP1I	GCGC	1 cut(s)	854
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	2 cut(s)	151, 927
HinfI	GANTC	5 cut(s)	139, 382, 487, 772, 780
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	496, 748
Hpy188I	TCNGA	4 cut(s)	331, 552, 619, 646
Hpy188III	TCNNGA	2 cut(s)	240, 1000
Hpy8I	GTNNAC	2 cut(s)	496, 748
HpyAV	CCTTC	3 cut(s)	31, 83, 118
HpyCH4III	ACNGT	3 cut(s)	671, 724, 990
HpyCH4V	TGCA	5 cut(s)	496, 539, 627, 684, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	545, 872, 950
HpyF3I	CTNAG	4 cut(s)	328, 348, 616, 776
Hsp92II	CATG	5 cut(s)	147, 166, 711, 944, 980
HspAI	GCGC	1 cut(s)	854
Ksp22I	TGATCA	1 cut(s)	1029
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	5 cut(s)	188, 331, 593, 1029, 1042
LmnI	GCTCC	3 cut(s)	4, 74, 589
Lsp1109I	GCAGC	2 cut(s)	523, 1081
LweI	GCATC	2 cut(s)	614, 757
MaeIII	GTNAC	4 cut(s)	253, 323, 484, 958
MalI	GATC	5 cut(s)	190, 333, 595, 1031, 1044
MboI	GATC	5 cut(s)	188, 331, 593, 1029, 1042
MboII	GAAGA	5 cut(s)	36, 389, 742, 921, 1069
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	1 cut(s)	1042
MhlI	GDGCHC	2 cut(s)	431, 498
MlsI	TGGCCA	1 cut(s)	225
MluCI	AATT	7 cut(s)	291, 368, 403, 456, 518, 733, 954
MluNI	TGGCCA	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	481, 789
MmeI	TCCRAC	3 cut(s)	400, 495, 790
MnlI	CCTC	9 cut(s)	274, 351, 416, 640, 747, 948, 963, 1056, 1088
Mox20I	TGGCCA	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	5 cut(s)	155, 363, 561, 747, 1102
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	1072
MspCI	CTTAAG	1 cut(s)	154
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	473, 568
MunI	CAATTG	1 cut(s)	954
MvaI	CCWGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	3 cut(s)	545, 872, 950
NciI	CCSGG	1 cut(s)	473
NcoI	CCATGG	2 cut(s)	143, 162
NdeII	GATC	5 cut(s)	188, 331, 593, 1029, 1042
NlaIII	CATG	5 cut(s)	147, 166, 711, 944, 980
NlaIV	GGNNCC	4 cut(s)	70, 428, 429, 528
NmuCI	GTSAC	3 cut(s)	253, 323, 484
NotI	GCGGCCGC	1 cut(s)	1012
OliI	CACNNNNGTG	1 cut(s)	266
PfeI	GAWTC	3 cut(s)	139, 382, 772
PflMI	CCANNNNNTGG	1 cut(s)	179
PfoI	TCCNGGA	2 cut(s)	471, 566
PkrI	GCNGC	5 cut(s)	538, 877, 1013, 1016, 1071
PleI	GAGTC	2 cut(s)	481, 788
PpsI	GAGTC	2 cut(s)	481, 788
Psp6I	CCWGG	1 cut(s)	566
PspFI	CCCAGC	1 cut(s)	1072
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	4 cut(s)	70, 428, 429, 528
PspOMI	GGGCCC	1 cut(s)	427
PspPI	GGNCC	6 cut(s)	159, 283, 427, 428, 527, 1075
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	1042
PvuII	CAGCTG	1 cut(s)	1072
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	5 cut(s)	155, 363, 561, 747, 1102
SatI	GCNGC	5 cut(s)	537, 876, 1012, 1015, 1070
Sau3AI	GATC	5 cut(s)	188, 331, 593, 1029, 1042
Sau96I	GGNCC	6 cut(s)	159, 283, 427, 428, 527, 1075
SchI	GAGTC	2 cut(s)	481, 789
ScrFI	CCNGG	2 cut(s)	473, 568
SduI	GDGCHC	2 cut(s)	431, 498
SfaNI	GCATC	2 cut(s)	614, 757
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	2 cut(s)	159, 527
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	7 cut(s)	291, 368, 403, 456, 518, 733, 954
SsiI	CCGC	7 cut(s)	54, 830, 876, 906, 1011, 1015, 1022
SspI	AATATT	2 cut(s)	131, 826
StyD4I	CCNGG	2 cut(s)	471, 566
StyI	CCWWGG	2 cut(s)	143, 162
TaaI	ACNGT	3 cut(s)	671, 724, 990
TaqI	TCGA	4 cut(s)	191, 600, 790, 1080
TasI	AATT	7 cut(s)	291, 368, 403, 456, 518, 733, 954
TauI	GCSGC	3 cut(s)	878, 1014, 1017
TfiI	GAWTC	3 cut(s)	139, 382, 772
Tru1I	TTAA	5 cut(s)	155, 363, 561, 747, 1102
Tru9I	TTAA	5 cut(s)	155, 363, 561, 747, 1102
TscAI	CASTG	4 cut(s)	18, 268, 325, 505
TseFI	GTSAC	3 cut(s)	253, 323, 484
TseI	GCWGC	2 cut(s)	536, 1069
Tsp45I	GTSAC	3 cut(s)	253, 323, 484
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	4 cut(s)	18, 268, 325, 505
Van91I	CCANNNNNTGG	1 cut(s)	179
Vha464I	CTTAAG	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	2 cut(s)	159, 527
XapI	RAATTY	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.