Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003248

Physical Location & Seq

Genomic Coordinates Reverse (-)

16989319 .. 16992103

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCAACTAGTCTTTTAGAGTTGAGGAGGAGGTCGATCTTCTGTGAGATAGAATTCGTTTTGTCAGCCAGTATCTTTAGACCTACCTTTTCATTTGGGTGTCTTGATCTAGGTACCTTGCTTTCTGAACTGATTCTTTTTTTATGTTCGCCAGAGCCTCCTCAAACTTCTGTGAAGTACTTAACTTGGCATAGGACGACATCATCTCGATCCTCTTCGTCGAGGAATCCTTTGGGAGCAAACTTAAAAGATGATATGGATGATCTTACTGGTCACCTCTTTGATAACTTCTGCATGAATTCAGGCAGTCATGCCTCAACCTTGGATAGGCTATATGCGTGGGAGAGGAAGCTTTATGATGAAGTCAAGAGTTCTCAAATAACTGATAAAACTCATGCTGTTGTCAAGGATCGACATTCTAGAATCAGGGTTGCTATTCACAGAATTGACTCAATATCGAAGAGGATTGAGGATTTACGAGACAAAGAGCTCCAGCCTCAACTCGAAGAGTTAATTGAAGGCAACACCAAAATCTCCGTACAGCCAAAATCACGCTGTCAGATTACGATCGAGCTTAATGACGAACTCAACTCTCTATCATCAAGTTTTATGAAGTGGAATGGTGCTCAAAAGTCCTATTTGCAGTCTATAGATGCTTGGCTTTTAAAATGCATCTCTTTTCCACAGAAGTCTTCCAAAAAGAAAAGGAGGCCGTACGAAATCCCCTATAGGAACTATGGCCCTCCAATATATGTCACCTGTGGTGACTGGTTGGAAAAGCTTGGCAGCTTACCTGCCAAAGAAGTGGAAGATTCTATAAAGACTTTAGCGGCTGAAACTTACCGTTTTTTACCACACCAAGAAAAGAAAGAGAAGGGTGCAGGCCTATCTGATTTAACATCCTGGAAGCATGACAATGGTAGTGATTCTGGTGCTAATATGATAACAGATGAAGTTTCTCAAGACTGGATTTCAGGTTTCGACCATTTCCAAATAAGCTTGGCGGGGTTTCGTGGTAAGTTGAGCAACTTTGCCGAGTCGTCTGTGGAGGCGTATGTAGACCTGCAGAAGGCCATCCAGCGTGCTAAGAGCCATTATGAACAGTTTAAAGCTCAATCTTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

376

Amino Acids

42.72

Weight (kDa)

7.62

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27090 AT2G27090
fragaria_vesca	FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700
malus_domestica	MD00G1106500.v1.1 MD11G1182800.v1.1 MD11G1182900.v1.1
prunus_persica	Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1
pyrus_communis	pycom11g15930 pycom11g15950 pycom5153684g00360
rosa_chinensis	RchiOBHm_Chr5g0049991
rosa_laevigata	RLG00000034675
rosa_multiflora	Rmu_sc0000333.1_g000025
rosa_roxburghii	Rroxscaffold_1G00031170
rosa_rugosa	Rorug05G0256300 Rorug05G0256400.1
rosa_samantha	Rh5AG329300 Rh5BG340200 Rh5CG366200 Rh5DG352800
rosa_wichuraiana	Rw5G031110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	802, 1071
Acc65I	GGTACC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	1059
AciI	CCGC	2 cut(s)	830, 1004
AclWI	GGATC	2 cut(s)	204, 417
AcsI	RAATTY	2 cut(s)	53, 298
AfaI	GTAC	4 cut(s)	115, 179, 540, 716
AfiI	CCNNNNNNNGG	2 cut(s)	327, 1069
AgsI	TTSAA	1 cut(s)	518
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	902
AluBI	AGCT	7 cut(s)	352, 490, 574, 781, 789, 999, 1112
AluI	AGCT	7 cut(s)	352, 490, 574, 781, 789, 999, 1112
Alw21I	GWGCWC	2 cut(s)	492, 628
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	204, 417
AoxI	GGCC	4 cut(s)	710, 739, 883, 1071
ApeKI	GCWGC	1 cut(s)	786
ApoI	RAATTY	2 cut(s)	53, 298
Asp700I	GAANNNNTTC	1 cut(s)	132
Asp718I	GGTACC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	740
AsuHPI	GGTGA	3 cut(s)	266, 748, 776
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	2 cut(s)	492, 628
BbvI	GCAGC	1 cut(s)	798
BccI	CCATC	1 cut(s)	1082
BceAI	ACGGC	1 cut(s)	697
BciT130I	CCWGG	1 cut(s)	904
BcoDI	GTCTC	1 cut(s)	474
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	3 cut(s)	9, 110, 420
BfmI	CTRYAG	3 cut(s)	648, 727, 1064
BfuAI	ACCTGC	2 cut(s)	802, 1071
BisI	GCNGC	2 cut(s)	787, 831
BlsI	GCNGC	2 cut(s)	788, 832
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	904
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	904
BmsI	GCATC	2 cut(s)	643, 681
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	945
BsaBI	GATNNNNATC	1 cut(s)	566
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 1069
Bse1I	ACTGG	4 cut(s)	69, 274, 773, 971
Bse8I	GATNNNNATC	1 cut(s)	566
BseBI	CCWGG	1 cut(s)	904
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	3 cut(s)	265, 899, 1074
BseJI	GATNNNNATC	1 cut(s)	566
BseLI	CCNNNNNNNGG	2 cut(s)	327, 1069
BseNI	ACTGG	4 cut(s)	69, 274, 773, 971
BseRI	GAGGAG	3 cut(s)	40, 43, 150
BseXI	GCAGC	1 cut(s)	798
BsgI	GTGCAG	1 cut(s)	900
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	4 cut(s)	712, 741, 885, 1073
BshNI	GGYRCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	2 cut(s)	492, 628
BsiWI	CGTACG	1 cut(s)	714
BslI	CCNNNNNNNGG	2 cut(s)	327, 1069
BsmAI	GTCTC	1 cut(s)	474
BsnI	GGCC	4 cut(s)	712, 741, 885, 1073
Bsp1286I	GDGCHC	2 cut(s)	492, 628
Bsp143I	GATC	6 cut(s)	36, 106, 209, 262, 409, 567
BspACI	CCGC	2 cut(s)	830, 1004
BspANI	GGCC	4 cut(s)	712, 741, 885, 1073
BspLI	GGNNCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	1068
BspMI	ACCTGC	2 cut(s)	802, 1071
BspPI	GGATC	2 cut(s)	204, 417
BspT107I	GGYRCC	1 cut(s)	113
BsrI	ACTGG	4 cut(s)	69, 274, 773, 971
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	6 cut(s)	36, 106, 209, 262, 409, 567
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	3 cut(s)	845, 1104, 1125
Bst6I	CTCTTC	3 cut(s)	220, 455, 501
BstC8I	GCNNGC	2 cut(s)	883, 1083
BstDEI	CTNAG	1 cut(s)	1086
BstEII	GGTNACC	1 cut(s)	272
BstENI	CCTNNNNNAGG	2 cut(s)	325, 1067
BstF5I	GGATG	3 cut(s)	265, 899, 1074
BstKTI	GATC	6 cut(s)	39, 109, 212, 265, 412, 570
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	6 cut(s)	36, 106, 209, 262, 409, 567
BstMCI	CGRYCG	1 cut(s)	570
BstNI	CCWGG	1 cut(s)	904
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	902
BstSFI	CTRYAG	3 cut(s)	648, 727, 1064
BstV1I	GCAGC	1 cut(s)	798
BstV2I	GAAGAC	1 cut(s)	684
BstXI	CCANNNNNNTGG	1 cut(s)	805
BsuRI	GGCC	4 cut(s)	712, 741, 885, 1073
BtsCI	GGATG	3 cut(s)	265, 899, 1074
BtsIMutI	CAGTG	1 cut(s)	1121
BveI	ACCTGC	2 cut(s)	802, 1071
Cac8I	GCNNGC	2 cut(s)	883, 1083
Cfr13I	GGNCC	1 cut(s)	740
Csp6I	GTAC	4 cut(s)	114, 178, 539, 715
CviAII	CATG	4 cut(s)	295, 311, 395, 911
CviQI	GTAC	4 cut(s)	114, 178, 539, 715
DdeI	CTNAG	1 cut(s)	1086
DpnI	GATC	6 cut(s)	38, 108, 211, 264, 411, 569
DpnII	GATC	6 cut(s)	36, 106, 209, 262, 409, 567
DraI	TTTAAA	2 cut(s)	666, 1108
Eam1104I	CTCTTC	3 cut(s)	220, 455, 501
EarI	CTCTTC	3 cut(s)	220, 455, 501
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	885
Eco24I	GRGCYC	1 cut(s)	492
Eco53kI	GAGCTC	1 cut(s)	490
Eco91I	GGTNACC	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	2 cut(s)	325, 1067
EcoO65I	GGTNACC	1 cut(s)	272
EcoRI	GAATTC	2 cut(s)	53, 298
EcoRII	CCWGG	1 cut(s)	902
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	674
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	4 cut(s)	298, 314, 398, 914
FatI	CATG	4 cut(s)	294, 310, 394, 910
FauI	CCCGC	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	1059
Fnu4HI	GCNGC	2 cut(s)	787, 831
FokI	GGATG	3 cut(s)	272, 886, 1061
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	2 cut(s)	787, 831
FspBI	CTAG	3 cut(s)	9, 110, 420
GluI	GCNGC	2 cut(s)	787, 831
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	712, 741, 885, 1073
Hin1II	CATG	4 cut(s)	298, 314, 398, 914
HindIII	AAGCTT	3 cut(s)	350, 779, 997
HinfI	GANTC	7 cut(s)	133, 226, 423, 449, 812, 926, 1037
HphI	GGTGA	3 cut(s)	266, 748, 776
Hpy166II	GTNNAC	1 cut(s)	1060
Hpy188I	TCNGA	3 cut(s)	127, 561, 892
Hpy188III	TCNNGA	5 cut(s)	104, 207, 367, 420, 962
Hpy8I	GTNNAC	1 cut(s)	1060
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	3 cut(s)	512, 868, 1063
HpyCH4III	ACNGT	3 cut(s)	845, 1104, 1125
HpyCH4V	TGCA	5 cut(s)	294, 643, 672, 881, 1066
HpyF3I	CTNAG	1 cut(s)	1086
Hsp92II	CATG	4 cut(s)	298, 314, 398, 914
KpnI	GGTACC	1 cut(s)	117
Kzo9I	GATC	6 cut(s)	36, 106, 209, 262, 409, 567
LmnI	GCTCC	2 cut(s)	236, 495
Lsp1109I	GCAGC	1 cut(s)	798
LweI	GCATC	2 cut(s)	643, 681
MaeI	CTAG	3 cut(s)	9, 110, 420
MaeIII	GTNAC	3 cut(s)	272, 754, 764
MalI	GATC	6 cut(s)	38, 108, 211, 264, 411, 569
MboI	GATC	6 cut(s)	36, 106, 209, 262, 409, 567
MboII	GAAGA	7 cut(s)	31, 207, 472, 518, 684, 821, 1110
MhlI	GDGCHC	2 cut(s)	492, 628
MluCI	AATT	4 cut(s)	53, 298, 444, 513
MlyI	GAGTC	2 cut(s)	443, 1046
MmeI	TCCRAC	1 cut(s)	753
Mph1103I	ATGCAT	1 cut(s)	674
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	7 cut(s)	182, 245, 512, 576, 665, 896, 1107
MslI	CAYNNNNRTG	2 cut(s)	97, 915
MspR9I	CCNGG	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	904
NdeII	GATC	6 cut(s)	36, 106, 209, 262, 409, 567
NlaIII	CATG	4 cut(s)	298, 314, 398, 914
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	1 cut(s)	1060
NmuCI	GTSAC	3 cut(s)	272, 754, 764
NsiI	ATGCAT	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	885
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	5 cut(s)	133, 226, 423, 812, 926
Pfl23II	CGTACG	1 cut(s)	714
PfoI	TCCNGGA	1 cut(s)	902
PkrI	GCNGC	2 cut(s)	788, 832
Ple19I	CGATCG	1 cut(s)	570
PleI	GAGTC	2 cut(s)	443, 1045
PpsI	GAGTC	2 cut(s)	443, 1045
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	902
PspEI	GGTNACC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	902
PspLI	CGTACG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	740
PstI	CTGCAG	1 cut(s)	1068
PvuI	CGATCG	1 cut(s)	570
RsaI	GTAC	4 cut(s)	115, 179, 540, 716
RsaNI	GTAC	4 cut(s)	114, 178, 539, 715
RseI	CAYNNNNRTG	2 cut(s)	97, 915
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	7 cut(s)	182, 245, 512, 576, 665, 896, 1107
SatI	GCNGC	2 cut(s)	787, 831
Sau3AI	GATC	6 cut(s)	36, 106, 209, 262, 409, 567
Sau96I	GGNCC	1 cut(s)	740
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	2 cut(s)	443, 1046
ScrFI	CCNGG	1 cut(s)	904
SduI	GDGCHC	2 cut(s)	492, 628
SfaNI	GCATC	2 cut(s)	643, 681
SfcI	CTRYAG	3 cut(s)	648, 727, 1064
SmiMI	CAYNNNNRTG	2 cut(s)	97, 915
SmlI	CTYRAG	1 cut(s)	960
SmoI	CTYRAG	1 cut(s)	960
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	4 cut(s)	53, 298, 444, 513
SseBI	AGGCCT	1 cut(s)	885
SsiI	CCGC	2 cut(s)	830, 1004
SspMI	CTAG	3 cut(s)	9, 110, 420
SstI	GAGCTC	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	885
StyD4I	CCNGG	1 cut(s)	902
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	845, 1104, 1125
TaqI	TCGA	8 cut(s)	35, 208, 221, 412, 458, 504, 570, 981
TasI	AATT	4 cut(s)	53, 298, 444, 513
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	5 cut(s)	133, 226, 423, 812, 926
Tru1I	TTAA	7 cut(s)	182, 245, 512, 576, 665, 896, 1107
Tru9I	TTAA	7 cut(s)	182, 245, 512, 576, 665, 896, 1107
TscAI	CASTG	1 cut(s)	1128
TseFI	GTSAC	3 cut(s)	272, 754, 764
TseI	GCWGC	1 cut(s)	786
Tsp45I	GTSAC	3 cut(s)	272, 754, 764
TspDTI	ATGAA	6 cut(s)	81, 311, 375, 626, 966, 1113
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	1128
XagI	CCTNNNNNAGG	2 cut(s)	325, 1067
XapI	RAATTY	2 cut(s)	53, 298
XbaI	TCTAGA	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	1059
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	3 cut(s)	9, 110, 420
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.