Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003248

Physical Location & Seq

Genomic Coordinates Reverse (-)

16995240 .. 16996430

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGAGCCTCAAACTCTAAAATAGAAGAACATAAGGCCCTGCAGCTATGTCGAGAAAGGAAGAAGTTTGTTAAACTCGCACTTGACGGCAGATGCTCGCTAGCAGCAGCTCATTTCATGTATATTCAATCACTAAAGAATACTGGAACAGCTCTTAGGAAATTTGTCGATCTTGGGGCTCCTGTTGAGTCTTCCTTGTACACTTCCACTAGTGCAACGCCAGAGATTCTTGTTCAAACTGGCAAGAGTCTTTCTCAATTCTCTTTTTCTTCTCCATCTGTGTCACAACACATAGATGCAGTTGAAACCTTTTTTCCATCTCCCTCTCCTCCAAATTCTACTCGATTTCAGGCAAATCATATGAAATTCAGGGGCAGCTTTTCTAAAACAGTTGAAGAAAAACCTCCTATTCCCTTTACTGCAACAGTAACCTCCTCGAGCACCCCTGAAGCTTCTTCACTCCCACCTCAAACTCCACCGTGGGATTACTTTGACTTTTTCCATCCAATCGACCATCAATTTTCTTTTCAAGAAGGGAAGGGAATGAACCAGGGGTTTGAAAATAACAATGATATGAGACAGCTTAGGGAAGATGAGGGAATTCCTGATATGGAAGATGAAGAAGAGAAGGCTTCTTTTCATGGAAGGGAAGAATCTCAGGATTTTGAAGATGAATTCGATGAGCCTGCTACAAATACCCTTGTTCGAAGTTTTGAAAATCTTAATAGAGTACAGGATCACATTGAAGCTAGTGCTTCACCTACAATGCCTTCTGCAGGAAGTGTAACTTCAGAAACTCAATTATTGAATGGGGAGAAAAGTAACTCACCTGATTTTTCATCATTGAGAGCTACATCCTCATCAGTTGCAGTTGAAACTGACTCAACTAAAAAAACAGTTAAAGAAGATTGCATTGAAAGTAAGGTTGCCCCAAAAGATTTTTTTTCAAGCATTAAAGATATTGAAATTCTCTTTATAAGAGCTTTCGAGTCTGGCAAAGAAATTCCTAGAATGCTTGAAGCAAATAAGTTGCATTTCCGTCCAATTTTCCCGAAAAAAGAAAGTAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTTATGAAAACACTTTTAAGTATATTTTAGTTATCCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

381

Amino Acids

42.48

Weight (kDa)

5.28

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27090 AT2G27090
fragaria_vesca	FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700 FvH4_3g27700
malus_domestica	MD00G1106500.v1.1 MD11G1182800.v1.1 MD11G1182900.v1.1
prunus_persica	Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1 Prupe.6G155700_v2.0.a1
pyrus_communis	pycom11g15930 pycom11g15950 pycom5153684g00360
rosa_chinensis	RchiOBHm_Chr5g0049991
rosa_laevigata	RLG00000034675
rosa_multiflora	Rmu_sc0000333.1_g000025
rosa_roxburghii	Rroxscaffold_1G00031170
rosa_rugosa	Rorug05G0256300 Rorug05G0256400.1
rosa_samantha	Rh5AG329300 Rh5BG340200 Rh5CG366200 Rh5DG352800
rosa_wichuraiana	Rw5G031110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	977
AclWI	GGATC	1 cut(s)	744
AcsI	RAATTY	7 cut(s)	161, 334, 365, 600, 674, 966, 1002
AcuI	CTGAAG	2 cut(s)	468, 774
AfaI	GTAC	2 cut(s)	200, 732
AfiI	CCNNNNNNNGG	1 cut(s)	776
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	9 cut(s)	46, 110, 152, 378, 452, 583, 749, 851, 983
AluI	AGCT	9 cut(s)	46, 110, 152, 378, 452, 583, 749, 851, 983
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	1 cut(s)	744
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	4 cut(s)	43, 104, 107, 375
ApoI	RAATTY	7 cut(s)	161, 334, 365, 600, 674, 966, 1002
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	750, 819
AsuII	TTCGAA	1 cut(s)	706
AsuNHI	GCTAGC	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	4 cut(s)	55, 116, 119, 387
BccI	CCATC	4 cut(s)	283, 325, 510, 522
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	32, 66, 668, 702
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	571
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	4 cut(s)	101, 210, 750, 1008
BfmI	CTRYAG	2 cut(s)	41, 774
BglII	AGATCT	1 cut(s)	1068
BisI	GCNGC	4 cut(s)	44, 105, 108, 376
BlsI	GCNGC	4 cut(s)	45, 106, 109, 377
Bme1390I	CCNGG	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	7, 180
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	83, 286
BmtI	GCTAGC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu10I	CCTNAGC	1 cut(s)	584
Bpu14I	TTCGAA	1 cut(s)	706
BsaJI	CCNNGG	3 cut(s)	479, 550, 1135
Bsc4I	CCNNNNNNNGG	1 cut(s)	776
Bse1I	ACTGG	2 cut(s)	148, 244
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	479, 550, 1135
BseGI	GGATG	2 cut(s)	502, 854
BseLI	CCNNNNNNNGG	1 cut(s)	776
BseMII	CTCAG	1 cut(s)	671
BseNI	ACTGG	2 cut(s)	148, 244
BseRI	GAGGAG	2 cut(s)	318, 424
BseXI	GCAGC	4 cut(s)	55, 116, 119, 387
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	776
BsmAI	GTCTC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	1017
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	706
Bsp1286I	GDGCHC	2 cut(s)	181, 443
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	169, 736, 1068
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	7, 180
BspMAI	CTGCAG	2 cut(s)	45, 778
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	744
BspT104I	TTCGAA	1 cut(s)	706
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	148, 244
BssECI	CCNNGG	3 cut(s)	479, 550, 1135
BssMI	GATC	3 cut(s)	169, 736, 1068
BssT1I	CCWWGG	1 cut(s)	1135
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	4 cut(s)	391, 427, 480, 898
Bst6I	CTCTTC	1 cut(s)	618
BstAUI	TGTACA	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	706
BstC8I	GCNNGC	3 cut(s)	98, 102, 687
BstDEI	CTNAG	3 cut(s)	155, 584, 657
BstDSI	CCRYGG	1 cut(s)	479
BstENI	CCTNNNNNAGG	1 cut(s)	774
BstF5I	GGATG	2 cut(s)	502, 854
BstKTI	GATC	3 cut(s)	172, 739, 1071
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	3 cut(s)	169, 736, 1068
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	2 cut(s)	41, 774
BstV1I	GCAGC	4 cut(s)	55, 116, 119, 387
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	1068
BstYI	RGATCY	1 cut(s)	1068
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	502, 854
Cac8I	GCNNGC	3 cut(s)	98, 102, 687
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	199, 731
CviAII	CATG	2 cut(s)	118, 641
CviQI	GTAC	2 cut(s)	199, 731
DdeI	CTNAG	3 cut(s)	155, 584, 657
DpnI	GATC	3 cut(s)	171, 738, 1070
DpnII	GATC	3 cut(s)	169, 736, 1068
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	1135
Eco24I	GRGCYC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	468, 774
Eco88I	CYCGRG	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRI	GAATTC	2 cut(s)	600, 674
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	1135
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	1135
FaeI	CATG	2 cut(s)	121, 644
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FatI	CATG	2 cut(s)	117, 640
FauNDI	CATATG	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	44, 105, 108, 376
FokI	GGATG	2 cut(s)	489, 841
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	4 cut(s)	44, 105, 108, 376
FspBI	CTAG	4 cut(s)	101, 210, 750, 1008
GluI	GCNGC	4 cut(s)	44, 105, 108, 376
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	121, 644
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	6 cut(s)	188, 226, 247, 653, 881, 989
HphI	GGTGA	2 cut(s)	750, 819
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	793
Hpy188III	TCNNGA	5 cut(s)	53, 530, 605, 659, 1051
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	5 cut(s)	527, 532, 622, 639, 780
HpyCH4III	ACNGT	4 cut(s)	391, 427, 480, 898
HpyCH4V	TGCA	8 cut(s)	43, 215, 299, 422, 776, 869, 912, 1033
HpyF3I	CTNAG	3 cut(s)	155, 584, 657
Hsp92II	CATG	2 cut(s)	121, 644
Kzo9I	GATC	3 cut(s)	169, 736, 1068
LmnI	GCTCC	2 cut(s)	5, 184
Lsp1109I	GCAGC	4 cut(s)	55, 116, 119, 387
LweI	GCATC	2 cut(s)	83, 286
MaeI	CTAG	4 cut(s)	101, 210, 750, 1008
MaeIII	GTNAC	4 cut(s)	282, 427, 784, 821
MalI	GATC	3 cut(s)	171, 738, 1070
MboI	GATC	3 cut(s)	169, 736, 1068
MflI	RGATCY	1 cut(s)	1068
MhlI	GDGCHC	2 cut(s)	181, 443
MlyI	GAGTC	4 cut(s)	197, 256, 875, 998
MnlI	CCTC	9 cut(s)	19, 334, 339, 414, 442, 445, 477, 589, 868
MseI	TTAA	5 cut(s)	72, 723, 900, 954, 1116
MslI	CAYNNNNRTG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	1017
MvaI	CCWGG	1 cut(s)	551
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	3 cut(s)	169, 736, 1068
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	121, 644
NlaIV	GGNNCC	2 cut(s)	7, 180
NmuCI	GTSAC	1 cut(s)	282
NspV	TTCGAA	1 cut(s)	706
PaeR7I	CTCGAG	1 cut(s)	436
PctI	GAATGC	1 cut(s)	1017
PfeI	GAWTC	2 cut(s)	226, 653
PkrI	GCNGC	4 cut(s)	45, 106, 109, 377
PleI	GAGTC	4 cut(s)	196, 255, 875, 997
PpsI	GAGTC	4 cut(s)	196, 255, 875, 997
PsiI	TTATAA	1 cut(s)	977
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	7, 180
PspPI	GGNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	436
PstI	CTGCAG	2 cut(s)	45, 778
PsuI	RGATCY	1 cut(s)	1068
RsaI	GTAC	2 cut(s)	200, 732
RsaNI	GTAC	2 cut(s)	199, 731
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	5 cut(s)	72, 723, 900, 954, 1116
SatI	GCNGC	4 cut(s)	44, 105, 108, 376
Sau3AI	GATC	3 cut(s)	169, 736, 1068
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	4 cut(s)	197, 256, 875, 998
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	2 cut(s)	181, 443
SfaNI	GCATC	2 cut(s)	83, 286
SfcI	CTRYAG	2 cut(s)	41, 774
Sfr274I	CTCGAG	1 cut(s)	436
SfuI	TTCGAA	1 cut(s)	706
SlaI	CTCGAG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
SpeI	ACTAGT	1 cut(s)	209
SspMI	CTAG	4 cut(s)	101, 210, 750, 1008
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	1135
TaaI	ACNGT	4 cut(s)	391, 427, 480, 898
TaqI	TCGA	8 cut(s)	52, 168, 343, 437, 510, 678, 706, 987
TatI	WGTACW	2 cut(s)	198, 730
TfiI	GAWTC	2 cut(s)	226, 653
Tru1I	TTAA	5 cut(s)	72, 723, 900, 954, 1116
Tru9I	TTAA	5 cut(s)	72, 723, 900, 954, 1116
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	4 cut(s)	43, 104, 107, 375
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	8 cut(s)	106, 377, 560, 629, 633, 687, 828, 1119
TspGWI	ACGGA	1 cut(s)	1028
XagI	CCTNNNNNAGG	1 cut(s)	774
XapI	RAATTY	7 cut(s)	161, 334, 365, 600, 674, 966, 1002
XhoI	CTCGAG	1 cut(s)	436
XspI	CTAG	4 cut(s)	101, 210, 750, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.