pycom11g16420

Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
18007350 .. 18008031
682 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGCAGAGAAGAGTGGTGATGTTGGACGTAGCAATAACGGATGGTAGAGCCAATATCTCTCTAAAGAGATCCACTGACCCTGAAGCTGCTGCTGCTAATGACGTTCCAAAACCTTCGTCACAAGAGTTGAAGGACGAGATTCTTGAGGTTGCTGGTAAAATCTACAAATCAGGGATGTCTCTCCTCGTCATTGACACCGAAAATAAGTTTGTTTCAACTGGTTTTGCTAAGGAGATTGCCAGAGTTGCTCACGGAATATATTACTACTTGCCGAATGCCTCAGATGCTGTAATCTCAGCTGCAACGAAGGACGCTTTATCGGCACTGAAAAGCACATGA

Protein Analysis

113

Amino Acids

12.03

Weight (kDa)

6.57

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 102
AgsI TTSAA 2 cut(s) 130, 216
AluBI AGCT 2 cut(s) 86, 299
AluI AGCT 2 cut(s) 86, 299
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 287
ApeKI GCWGC 4 cut(s) 86, 89, 92, 299
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AsuHPI GGTGA 1 cut(s) 28
BbvI GCAGC 4 cut(s) 73, 76, 79, 286
BccI CCATC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 183
BisI GCNGC 4 cut(s) 87, 90, 93, 300
BlsI GCNGC 4 cut(s) 88, 91, 94, 301
BmsI GCATC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 46, 180
BseMII CTCAG 2 cut(s) 294, 309
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 4 cut(s) 73, 76, 79, 286
BsmAI GTCTC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 68
BspCNI CTCAG 2 cut(s) 293, 308
BspPI GGATC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 223
BssMI GATC 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 4
BstDEI CTNAG 3 cut(s) 228, 280, 295
BstF5I GGATG 2 cut(s) 46, 180
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 4 cut(s) 92, 245, 284, 320
BstV1I GCAGC 4 cut(s) 73, 76, 79, 286
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtsCI GGATG 2 cut(s) 46, 180
BtsIMutI CAGTG 2 cut(s) 72, 323
CaiI CAGNNNCTG 1 cut(s) 287
CseI GACGC 1 cut(s) 320
CviAII CATG 1 cut(s) 336
CviJI RGCY 3 cut(s) 50, 86, 299
CviKI_1 RGCY 3 cut(s) 50, 86, 299
DdeI CTNAG 3 cut(s) 228, 280, 295
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 102
FaeI CATG 1 cut(s) 339
FaiI YATR 2 cut(s) 259, 337
FatI CATG 1 cut(s) 335
Fnu4HI GCNGC 4 cut(s) 87, 90, 93, 300
FokI GGATG 2 cut(s) 53, 187
Fsp4HI GCNGC 4 cut(s) 87, 90, 93, 300
GluI GCNGC 4 cut(s) 87, 90, 93, 300
HgaI GACGC 1 cut(s) 320
Hin1II CATG 1 cut(s) 339
HinfI GANTC 1 cut(s) 139
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 123, 124, 301
HpyCH4IV ACGT 2 cut(s) 27, 102
HpyCH4V TGCA 2 cut(s) 4, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 245, 284, 320
HpyF3I CTNAG 3 cut(s) 228, 280, 295
HpySE526I ACGT 2 cut(s) 27, 102
Hsp92II CATG 1 cut(s) 339
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 93, 138, 156, 204, 253
Lsp1109I GCAGC 4 cut(s) 73, 76, 79, 286
LweI GCATC 1 cut(s) 274
MaeII ACGT 2 cut(s) 27, 102
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 1 cut(s) 21
MflI RGATCY 1 cut(s) 68
MnlI CCTC 3 cut(s) 139, 194, 289
MspA1I CMGCKG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 4 cut(s) 92, 245, 284, 320
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 117
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 4 cut(s) 88, 91, 94, 301
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 299
SatI GCNGC 4 cut(s) 87, 90, 93, 300
Sau3AI GATC 1 cut(s) 68
SetI ASST 6 cut(s) 30, 88, 105, 115, 150, 301
SfaNI GCATC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
TaiI ACGT 2 cut(s) 30, 105
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 2 cut(s) 79, 330
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 4 cut(s) 86, 89, 92, 299
Tsp45I GTSAC 1 cut(s) 117
TspGWI ACGGA 2 cut(s) 53, 267
TspRI CASTG 2 cut(s) 79, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.