Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013417

Physical Location & Seq

Genomic Coordinates Reverse (-)

18832830 .. 18836165

Gene Structure 3336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAGGAAGCCAGAGCCCTCTTCTGCAGCAGCAGGCAAGAACAACAAAGAGAACAACTCCAACAGTAAGGTCCGAAAGGGTTTGTGGTCGCCGGAAGAGGACGACAAGCTGATGAGGTATATGATCAACAATGGCCAAGGTTGTTGGAGCGATGTGGCAAGAAATGCTGGCCTGCAGAGGTGTGGCAAGAGTTGCAGATTGCGCTGGATCAATTACTTGAGGCCTGACCTTAAGCGAGGTGCCTTTTCGCCCCAAGAAGAAGAGCTCATTATCCATTTGCATTCTCTCCTCGGAAACAGGTGGTCTCAAATTGCAGCCCAGCTGCCAGGAAGAACTGACAATGAAATAAAGAATTTCTGGAATTCAACAATAAAGAAAAGGTTAAAGAATTTGTCATCCTCCAATGGCTCACCAAACACAAGCGACTCATCCCCAGAGGCTAAAGATCATCGTGTGGTGGCAGCCGGTAGGTTCATTATTCCCAGCCAAGAACATGGCATGGTGTCAATTTACAGGGACTCAACACCGTCATTCATGCAATCTGCGGTCCTCAACCACATGTTCGATCCATTTCCTGTGCTCGATATTGATCAGGGCGGCCTAACCTTGTCCGGTGCAGGTGGATACTACAACGCCAACCCATGCATAACACAAAGGGAGATTGGAGTCGGTGGTGGTGGTGATTGTTATGATTTTGGAGGAAACGGAGGGTTTGGGAGTGGGGATGTTGATATTGGGGTAGAAGGAGAGATATTTGTCCCTCCCCTTGAGAGTGTGAGCATTGAAGACCAAAATATTAAAACTGAAACCACCTATGGGTATAGTAATAATAATAATAATAATTACTACAATAATATAAATAGCATCCTCACCTGCAATAAAACTAATAAAAATATTAAAGGTGAGAGCATAATTGGGGTTGGGAATTACTTTGACGATGATCAGGAAGAGTTAACAAGGGGGGACTGGGACTTGGAGGATTTGATGAAAGATGTTTCATCTTCCTCCTTTCCTTTTCTTGACTACCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

345

Amino Acids

38.09

Weight (kDa)

5.19

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	26 - 73	2.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	29 - 88	5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	79 - 122	3.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	82 - 129	4.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12870
fragaria_vesca	FvH4_3g28890
malus_domestica	MD03G1176000.v1.1 MD11G1196500.v1.1
prunus_persica	Prupe.4G247800_v2.0.a1
pyrus_communis	pycom03g13330 pycom11g16920
rosa_chinensis	RchiOBHm_Chr5g0051961
rosa_laevigata	RLG00000034850
rosa_multiflora	Rmu_sc0005990.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027530 Rroxscaffold_1G00027670
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5AG348000 Rh5BG358700 Rh5CG384100 Rh5DG374100
rosa_wichuraiana	Rw0G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	608, 881
Acc36I	ACCTGC	2 cut(s)	608, 881
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	2 cut(s)	545, 597
AclWI	GGATC	2 cut(s)	215, 560
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	3 cut(s)	352, 361, 388
AfiI	CCNNNNNNNGG	1 cut(s)	816
AflII	CTTAAG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	366, 785
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	3 cut(s)	109, 265, 322
AluI	AGCT	3 cut(s)	109, 265, 322
Alw21I	GWGCWC	2 cut(s)	267, 582
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	215, 560
AoxI	GGCC	4 cut(s)	133, 169, 221, 598
ApeKI	GCWGC	5 cut(s)	26, 29, 314, 322, 461
ApoI	RAATTY	3 cut(s)	352, 361, 388
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	2 cut(s)	70, 547
AsuHPI	GGTGA	4 cut(s)	402, 692, 862, 914
AvaII	GGWCC	2 cut(s)	70, 547
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	2 cut(s)	18, 267
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	2 cut(s)	267, 582
BbvI	GCAGC	5 cut(s)	38, 41, 309, 326, 473
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	617
BclI	TGATCA	3 cut(s)	123, 589, 940
BcoDI	GTCTC	1 cut(s)	309
BfmI	CTRYAG	2 cut(s)	24, 173
BfrI	CTTAAG	1 cut(s)	230
BfuAI	ACCTGC	2 cut(s)	608, 881
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	6 cut(s)	27, 30, 315, 323, 462, 598
BlsI	GCNGC	6 cut(s)	28, 31, 316, 324, 463, 599
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	2 cut(s)	70, 547
BmgT120I	GGNCC	2 cut(s)	70, 547
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	976
BmsI	GCATC	1 cut(s)	873
BmuI	ACTGGG	1 cut(s)	976
BpiI	GAAGAC	1 cut(s)	792
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpuEI	CTTGAG	2 cut(s)	238, 788
BsaBI	GATNNNNATC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	136, 289
BsaWI	WCCGGW	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	1 cut(s)	816
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	971
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	136, 289
BseGI	GGATG	4 cut(s)	395, 428, 730, 864
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	1 cut(s)	816
BseNI	ACTGG	1 cut(s)	971
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	38, 41, 309, 326, 473
BseYI	CCCAGC	2 cut(s)	318, 482
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	4 cut(s)	135, 171, 223, 600
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	2 cut(s)	267, 582
BsiSI	CCGG	3 cut(s)	92, 465, 612
BslFI	GGGAC	4 cut(s)	530, 743, 977, 983
BslI	CCNNNNNNNGG	1 cut(s)	816
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	4 cut(s)	530, 743, 977, 983
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	4 cut(s)	135, 171, 223, 600
Bso31I	GGTCTC	1 cut(s)	309
Bsp1286I	GDGCHC	3 cut(s)	18, 267, 582
Bsp143I	GATC	6 cut(s)	123, 207, 445, 565, 589, 940
BspACI	CCGC	2 cut(s)	545, 597
BspANI	GGCC	4 cut(s)	135, 171, 223, 600
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	2 cut(s)	28, 177
BspMI	ACCTGC	2 cut(s)	608, 881
BspPI	GGATC	2 cut(s)	215, 560
BspQI	GCTCTTC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	239
BspTI	CTTAAG	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	971
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	136, 289
BssMI	GATC	6 cut(s)	123, 207, 445, 565, 589, 940
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	65, 528
Bst6I	CTCTTC	4 cut(s)	25, 90, 255, 942
BstAFI	CTTAAG	1 cut(s)	230
BstAPI	GCANNNNNTGC	2 cut(s)	164, 192
BstC8I	GCNNGC	3 cut(s)	34, 169, 173
BstF5I	GGATG	4 cut(s)	395, 428, 730, 864
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	6 cut(s)	126, 210, 448, 568, 592, 943
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	6 cut(s)	123, 207, 445, 565, 589, 940
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 192, 201
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	24, 173
BstV1I	GCAGC	5 cut(s)	38, 41, 309, 326, 473
BstV2I	GAAGAC	1 cut(s)	792
BstXI	CCANNNNNNTGG	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	4 cut(s)	135, 171, 223, 600
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	395, 428, 730, 864
BveI	ACCTGC	2 cut(s)	608, 881
Cac8I	GCNNGC	3 cut(s)	34, 169, 173
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	70, 547
CviAII	CATG	5 cut(s)	494, 499, 535, 559, 642
DpnI	GATC	6 cut(s)	125, 209, 447, 567, 591, 942
DpnII	GATC	6 cut(s)	123, 207, 445, 565, 589, 940
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	4 cut(s)	25, 90, 255, 942
EarI	CTCTTC	4 cut(s)	25, 90, 255, 942
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	223
Eco24I	GRGCYC	2 cut(s)	18, 267
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	70, 547
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	647
EcoT38I	GRGCYC	2 cut(s)	18, 267
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	5 cut(s)	497, 502, 538, 562, 645
FaqI	GGGAC	4 cut(s)	530, 743, 977, 983
FatI	CATG	5 cut(s)	493, 498, 534, 558, 641
FbaI	TGATCA	3 cut(s)	123, 589, 940
Fnu4HI	GCNGC	6 cut(s)	27, 30, 315, 323, 462, 598
FokI	GGATG	4 cut(s)	382, 415, 737, 851
FriOI	GRGCYC	2 cut(s)	18, 267
Fsp4HI	GCNGC	6 cut(s)	27, 30, 315, 323, 462, 598
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	27, 30, 315, 323, 462, 598
GsaI	CCCAGC	2 cut(s)	322, 486
HaeIII	GGCC	4 cut(s)	135, 171, 223, 600
HapII	CCGG	3 cut(s)	92, 465, 612
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	5 cut(s)	497, 502, 538, 562, 645
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HinfI	GANTC	3 cut(s)	425, 518, 666
HpaI	GTTAAC	1 cut(s)	954
HpaII	CCGG	3 cut(s)	92, 465, 612
HphI	GGTGA	4 cut(s)	402, 692, 862, 914
Hpy166II	GTNNAC	1 cut(s)	954
Hpy188I	TCNGA	2 cut(s)	74, 293
Hpy188III	TCNNGA	3 cut(s)	358, 944, 1019
Hpy8I	GTNNAC	1 cut(s)	954
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	2 cut(s)	65, 528
HpyCH4V	TGCA	9 cut(s)	26, 175, 195, 280, 314, 538, 617, 645, 876
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 192, 201
Hsp92II	CATG	5 cut(s)	497, 502, 538, 562, 645
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	3 cut(s)	123, 589, 940
KspAI	GTTAAC	1 cut(s)	954
Kzo9I	GATC	6 cut(s)	123, 207, 445, 565, 589, 940
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	5 cut(s)	38, 41, 309, 326, 473
LweI	GCATC	1 cut(s)	873
MalI	GATC	6 cut(s)	125, 209, 447, 567, 591, 942
MboI	GATC	6 cut(s)	123, 207, 445, 565, 589, 940
MboII	GAAGA	8 cut(s)	12, 107, 269, 272, 342, 797, 959, 993
MhlI	GDGCHC	3 cut(s)	18, 267, 582
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	9 cut(s)	211, 309, 352, 361, 388, 507, 841, 912, 925
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	3 cut(s)	419, 512, 675
MmeI	TCCRAC	2 cut(s)	84, 125
Mox20I	TGGCCA	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	5 cut(s)	231, 383, 798, 897, 953
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	322
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	3 cut(s)	92, 465, 612
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	164, 192, 201
NdeII	GATC	6 cut(s)	123, 207, 445, 565, 589, 940
NlaIII	CATG	5 cut(s)	497, 502, 538, 562, 645
NlaIV	GGNNCC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	647
NspI	RCATGY	1 cut(s)	562
PaqCI	CACCTGC	2 cut(s)	608, 881
PceI	AGGCCT	1 cut(s)	223
PciI	ACATGT	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	280
PkrI	GCNGC	6 cut(s)	28, 31, 316, 324, 463, 599
PleI	GAGTC	3 cut(s)	419, 512, 674
PpsI	GAGTC	3 cut(s)	419, 512, 674
PscI	ACATGT	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	2 cut(s)	318, 482
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	2 cut(s)	70, 547
PstI	CTGCAG	2 cut(s)	28, 177
PvuII	CAGCTG	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	5 cut(s)	231, 383, 798, 897, 953
SatI	GCNGC	6 cut(s)	27, 30, 315, 323, 462, 598
Sau3AI	GATC	6 cut(s)	123, 207, 445, 565, 589, 940
Sau96I	GGNCC	2 cut(s)	70, 547
SchI	GAGTC	3 cut(s)	419, 512, 675
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	3 cut(s)	18, 267, 582
SfaNI	GCATC	1 cut(s)	873
SfcI	CTRYAG	2 cut(s)	24, 173
SinI	GGWCC	2 cut(s)	70, 547
SmlI	CTYRAG	3 cut(s)	217, 230, 767
SmoI	CTYRAG	3 cut(s)	217, 230, 767
Sse9I	AATT	9 cut(s)	211, 309, 352, 361, 388, 507, 841, 912, 925
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	2 cut(s)	545, 597
SspI	AATATT	2 cut(s)	796, 895
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	65, 528
TaqI	TCGA	2 cut(s)	564, 582
TasI	AATT	9 cut(s)	211, 309, 352, 361, 388, 507, 841, 912, 925
TauI	GCSGC	1 cut(s)	600
Tru1I	TTAA	5 cut(s)	231, 383, 798, 897, 953
Tru9I	TTAA	5 cut(s)	231, 383, 798, 897, 953
TseI	GCWGC	5 cut(s)	26, 29, 314, 322, 461
TspDTI	ATGAA	5 cut(s)	357, 463, 523, 987, 1001
TspGWI	ACGGA	1 cut(s)	720
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	70, 547
XapI	RAATTY	3 cut(s)	352, 361, 388
XceI	RCATGY	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.