pycom11g18050

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011680
Physical Location & Seq
Reverse (-)
20309495 .. 20310088
594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGTATTACTTGAGAATTTGCAATTCTTTATTAATAGTTCGGCGTCCCGTGACTTGGTTCCTACCAACTTGTTCACATGACAATCCCGAAATTCGACACAAAATTATAAACATCCCTCATCCCTCCGCTATAAATCTGCTTCAAATTACAAGAACAAAATGTGCTGCTTTGAGAGAGAGAGAGAGAGAGACAATGGAAAGGACTAGCAGCGTGGTGTCGTGGGCGCCAGTGATTTTGTTGCTTGCACTTGTTGCCGGATCTACGGCGGTTTCCATATGCAACATTGAATCCAACCAACTGAAGGAGTGTCGCCCGGCAGTAACCGGCAAATCACCAAAACCACCAACCAAGAGATGTTGCAGTGTTGTCCGCCAAGCCAACTTACCCTGCCTCTGCAACTTCAAGTCCGTCCTCCCTTCGATTGGGATCAACCCTGCGCTGGCTATGGCGTTGCCTAAGAAGTGTGGCCTGAAAACGCCCCGAGAATGCCATGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

167

Amino Acids

18.44

Weight (kDa)

9.68

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 88 - 161 8.4e-12 Probable lipid transfer
Tryp_alpha_amyl PF00234 93 - 163 2.9e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011680)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55410 AT5G55410 AT5G55450 AT5G55460
fragaria_vesca FvH4_3g30320 FvH4_3g30320
malus_domestica MD11G1207300.v1.1
prunus_persica Prupe.4G228100_v2.0.a1
pyrus_communis pycom11g18050
rosa_chinensis RchiOBHm_Chr5g0056191
rosa_laevigata RLG00000035062
rosa_multiflora Rmu_sc0000680.1_g000025
rosa_roxburghii Rroxscaffold_1G00024100
rosa_rugosa Rorug05G0297900
rosa_samantha Rh5BG380100 Rh5CG402900 Rh5DG393100
rosa_wichuraiana Rw0G004430 Rw0G012670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 223
AciI CCGC 3 cut(s) 126, 266, 370
AclWI GGATC 2 cut(s) 265, 434
AcsI RAATTY 2 cut(s) 15, 90
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 2 cut(s) 43, 224
AfiI CCNNNNNNNGG 4 cut(s) 54, 301, 422, 439
AgsI TTSAA 3 cut(s) 143, 287, 403
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 265, 434
Ama87I CYCGRG 1 cut(s) 480
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 2 cut(s) 164, 207
ApoI RAATTY 2 cut(s) 15, 90
AseI ATTAAT 1 cut(s) 32
AspLEI GCGC 2 cut(s) 226, 439
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 324
AvaI CYCGRG 1 cut(s) 480
BanI GGYRCC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 151, 219
BceAI ACGGC 1 cut(s) 279
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 227
BisI GCNGC 2 cut(s) 165, 208
BlsI GCNGC 2 cut(s) 166, 209
Bme1390I CCNGG 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 59, 225
BmrFI CCNGG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 425
BsaHI GRCGYC 2 cut(s) 43, 224
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 301, 422, 439
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 425
BseGI GGATG 2 cut(s) 111, 118
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 4 cut(s) 54, 301, 422, 439
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 151, 219
BshFI GGCC 1 cut(s) 468
BshNI GGYRCC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 3 cut(s) 255, 314, 324
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 4 cut(s) 54, 301, 422, 439
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 1 cut(s) 468
BsoBI CYCGRG 1 cut(s) 480
Bsp143I GATC 2 cut(s) 257, 426
BspACI CCGC 3 cut(s) 126, 266, 370
BspANI GGCC 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 59, 225
BspPI GGATC 2 cut(s) 265, 434
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 323
BssMI GATC 2 cut(s) 257, 426
BssNI GRCGYC 2 cut(s) 43, 224
BstACI GRCGYC 2 cut(s) 43, 224
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 243, 441
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 111, 118
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 2 cut(s) 226, 439
BstKTI GATC 2 cut(s) 260, 429
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 257, 426
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 151, 219
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 1 cut(s) 468
BtsCI GGATG 2 cut(s) 111, 118
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 234, 367
Cac8I GCNNGC 2 cut(s) 243, 441
CfoI GCGC 2 cut(s) 226, 439
Cfr10I RCCGGY 1 cut(s) 323
CseI GACGC 1 cut(s) 32
CviAII CATG 2 cut(s) 77, 491
CviJI RGCY 3 cut(s) 377, 443, 468
CviKI_1 RGCY 3 cut(s) 377, 443, 468
DdeI CTNAG 1 cut(s) 456
DinI GGCGCC 1 cut(s) 225
DpnI GATC 2 cut(s) 259, 428
DpnII GATC 2 cut(s) 257, 426
EciI GGCGGA 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 480
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
FaeI CATG 2 cut(s) 80, 494
FaiI YATR 7 cut(s) 78, 107, 131, 275, 277, 446, 492
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 76, 490
FauNDI CATATG 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 165, 208
FokI GGATG 2 cut(s) 98, 105
Fsp4HI GCNGC 2 cut(s) 165, 208
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 225, 438
GluI GCNGC 2 cut(s) 165, 208
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 1 cut(s) 468
HapII CCGG 3 cut(s) 255, 314, 324
HgaI GACGC 1 cut(s) 32
HhaI GCGC 2 cut(s) 226, 439
Hin1I GRCGYC 2 cut(s) 43, 224
Hin1II CATG 2 cut(s) 80, 494
Hin6I GCGC 2 cut(s) 224, 437
HinP1I GCGC 2 cut(s) 224, 437
HinfI GANTC 1 cut(s) 287
HpaII CCGG 3 cut(s) 255, 314, 324
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 295, 426
HpyCH4V TGCA 5 cut(s) 21, 245, 279, 360, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 456
Hsp92I GRCGYC 2 cut(s) 43, 224
Hsp92II CATG 2 cut(s) 80, 494
HspAI GCGC 2 cut(s) 224, 437
KasI GGCGCC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 257, 426
LpnPI CCDG 8 cut(s) 240, 268, 327, 337, 400, 425, 447, 482
Lsp1109I GCAGC 2 cut(s) 151, 219
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 49, 319
MalI GATC 2 cut(s) 259, 428
MboI GATC 2 cut(s) 257, 426
MflI RGATCY 1 cut(s) 257
MluCI AATT 5 cut(s) 15, 22, 90, 102, 144
Mly113I GGCGCC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 4 cut(s) 126, 133, 401, 422
MseI TTAA 1 cut(s) 32
MspI CCGG 3 cut(s) 255, 314, 324
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 491
MwoI GCNNNNNNNGC 1 cut(s) 251
NarI GGCGCC 1 cut(s) 224
NciI CCSGG 1 cut(s) 314
NdeI CATATG 1 cut(s) 275
NdeII GATC 2 cut(s) 257, 426
NlaIII CATG 2 cut(s) 80, 494
NlaIV GGNNCC 2 cut(s) 59, 225
NmuCI GTSAC 1 cut(s) 49
PctI GAATGC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 166, 209
PluTI GGCGCC 1 cut(s) 227
PshBI ATTAAT 1 cut(s) 32
PsiI TTATAA 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 59, 225
PsuI RGATCY 1 cut(s) 257
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 2 cut(s) 165, 208
Sau3AI GATC 2 cut(s) 257, 426
ScrFI CCNGG 1 cut(s) 314
SfoI GGCGCC 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 5 cut(s) 15, 22, 90, 102, 144
SsiI CCGC 3 cut(s) 126, 266, 370
SspDI GGCGCC 1 cut(s) 223
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 312
TaqI TCGA 2 cut(s) 94, 419
TasI AATT 5 cut(s) 15, 22, 90, 102, 144
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 2 cut(s) 234, 367
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 164, 207
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 2 cut(s) 234, 367
VspI ATTAAT 1 cut(s) 32
XapI RAATTY 2 cut(s) 15, 90
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.