Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012078

Physical Location & Seq

Genomic Coordinates Forward (+)

23218449 .. 23221156

Gene Structure 2708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAATTAATTCGTAACCAAACAGCGGGTCAAGACATTAGTCCCATCATACGATTTGGGCTGGGCTTTACTACTGCTTCTCTGTATTATCCATTTCTGTCACGTTCAGGGTCAAGCAACAAGAAAATGGCAGCCATGGCTGCACTTCAGAGCTCCATGACCTCTCTTTCTCTCTCCTCTAACTCCTTCCTCGGCCAACGCCTTTTTCCCCCAACTCTGTACTCTGTCCCGGCCAAGTTAACAGCAAAGCCTTGTCTCATTGTAGTGAAGCTCAAAAGATGGGAGCGGAAGGAATGCAAGCCAAACAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGTTGGAGACACAGTGAAAGTCATATCTGGACATGACAAGGGTAAAACTGGAGAGGTGACAAAGATCTTTAAGCACAACAGCACCGTGATAGTCAAGGAGATAAACTTGAAGACAAAGCATATGAAGAGCAGGGAAGAGGGTGAACCAGGACAGATACTTAAGGTAGAAGGAGCCATACACAGCTCGAATGTGATGCTTTTCTCAAAAGAAAAGAATGTAGCAAGTCGGGTGGGTCATAAAATCCTGGAAAATGGACAACGAGTTCGATACCTCATCAAAACTGGTGAAATAATAGACAATGCAGAGAACTGGAAGAAATTGAAGGAAGAAAAAAAGAAAACTGAAGAAGCCGTCACTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

235

Amino Acids

26.06

Weight (kDa)

10.03

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	114 - 145	9.3e-10	KOW motif
ribosomal_L24	PF17136	147 - 211	4e-19	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54600 AT5G54600
fragaria_vesca	FvH4_3g21600
malus_domestica	MD03G1214300.v1.1 MD11G1229300.v1.1
prunus_persica	Prupe.4G200400_v2.0.a1
pyrus_communis	pycom03g16300 pycom11g20300
rosa_chinensis	RchiOBHm_Chr5g0037061
rosa_laevigata	RLG00000033747
rosa_multiflora	Rmu_sc0009252.1_g000002 Rmu_sc0014990.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043890
rosa_rugosa	Rorug05G0160100
rosa_samantha	Rh5AG252200 Rh5BG254000 Rh5CG286600 Rh5DG262500
rosa_wichuraiana	Rw5G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AciI	CCGC	2 cut(s)	26, 286
AcoI	YGGCCR	2 cut(s)	193, 231
AcuI	CTGAAG	2 cut(s)	131, 702
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	25
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	448, 661
AjnI	CCWGG	2 cut(s)	484, 582
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
AluBI	AGCT	3 cut(s)	153, 271, 522
AluI	AGCT	3 cut(s)	153, 271, 522
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	260, 339
AoxI	GGCC	2 cut(s)	193, 231
ApeKI	GCWGC	3 cut(s)	131, 140, 698
ArsI	GACNNNNNNTTYG	4 cut(s)	13, 45, 585, 617
AseI	ATTAAT	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	406, 491, 635
BanII	GRGCYC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	127, 143, 685
BccI	CCATC	2 cut(s)	53, 273
BceAI	ACGGC	1 cut(s)	674
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	2 cut(s)	486, 584
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	260, 339
BfrI	CTTAAG	1 cut(s)	497
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	3 cut(s)	132, 141, 699
BlsI	GCNGC	3 cut(s)	133, 142, 700
Bme1390I	CCNGG	3 cut(s)	230, 486, 584
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	3 cut(s)	230, 486, 584
BmsI	GCATC	1 cut(s)	522
BoxI	GACNNNNGTC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	135, 190
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	4 cut(s)	314, 391, 625, 653
BseBI	CCWGG	2 cut(s)	486, 584
BseDI	CCNNGG	2 cut(s)	135, 190
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseNI	ACTGG	4 cut(s)	314, 391, 625, 653
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	127, 143, 685
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	195, 233
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	27, 212
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	260, 339
BsmFI	GGGAC	2 cut(s)	27, 212
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	195, 233
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	402
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	26, 286
BspANI	GGCC	2 cut(s)	195, 233
BspLI	GGNNCC	1 cut(s)	511
BspQI	GCTCTTC	1 cut(s)	458
BspTI	CTTAAG	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	4 cut(s)	314, 391, 625, 653
BssECI	CCNNGG	2 cut(s)	135, 190
BssMI	GATC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	486, 584
Bst4CI	ACNGT	2 cut(s)	352, 424
Bst6I	CTCTTC	2 cut(s)	458, 468
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	299
BstDSI	CCRYGG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	2 cut(s)	260, 339
BstMBI	GATC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 140, 695
BstNI	CCWGG	2 cut(s)	486, 584
BstNSI	RCATGY	1 cut(s)	335
BstPAI	GACNNNNGTC	1 cut(s)	39
BstSCI	CCNGG	3 cut(s)	228, 484, 582
BstV1I	GCAGC	3 cut(s)	127, 143, 685
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	195, 233
BtgI	CCRYGG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	357, 693
Cac8I	GCNNGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	220
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	4 cut(s)	136, 157, 332, 371
CviQI	GTAC	1 cut(s)	220
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
EaeI	YGGCCR	2 cut(s)	193, 231
Eam1104I	CTCTTC	2 cut(s)	458, 468
EarI	CTCTTC	2 cut(s)	458, 468
Ecl136II	GAGCTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	131, 702
EcoICRI	GAGCTC	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	484, 582
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	4 cut(s)	139, 160, 335, 374
FaqI	GGGAC	2 cut(s)	27, 212
FatI	CATG	4 cut(s)	135, 156, 331, 370
FauI	CCCGC	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	132, 141, 699
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	132, 141, 699
GluI	GCNGC	3 cut(s)	132, 141, 699
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	195, 233
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	4 cut(s)	139, 160, 335, 374
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HpaI	GTTAAC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	3 cut(s)	406, 491, 635
Hpy166II	GTNNAC	2 cut(s)	240, 482
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	32, 366
Hpy8I	GTNNAC	2 cut(s)	240, 482
HpyAV	CCTTC	5 cut(s)	196, 283, 320, 500, 655
HpyCH4III	ACNGT	2 cut(s)	352, 424
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	5 cut(s)	143, 297, 331, 641, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 140, 695
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	4 cut(s)	139, 160, 335, 374
KspAI	GTTAAC	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	402
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	3 cut(s)	158, 283, 509
Lsp1109I	GCAGC	3 cut(s)	127, 143, 685
LweI	GCATC	1 cut(s)	522
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	4 cut(s)	14, 99, 394, 691
MalI	GATC	1 cut(s)	404
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	1 cut(s)	402
MboII	GAAGA	6 cut(s)	460, 475, 485, 664, 677, 695
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	3 cut(s)	5, 9, 656
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	6 cut(s)	172, 187, 200, 385, 469, 620
Mph1103I	ATGCAT	1 cut(s)	333
MseI	TTAA	5 cut(s)	8, 239, 336, 408, 498
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	26
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	3 cut(s)	230, 486, 584
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	2 cut(s)	486, 584
MwoI	GCNNNNNNNGC	3 cut(s)	137, 140, 695
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	4 cut(s)	139, 160, 335, 374
NlaIV	GGNNCC	1 cut(s)	511
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	3 cut(s)	99, 394, 691
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	458
PctI	GAATGC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	3 cut(s)	133, 142, 700
PshAI	GACNNNNGTC	1 cut(s)	39
PshBI	ATTAAT	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	484, 582
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	2 cut(s)	484, 582
PspN4I	GGNNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	402
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	5 cut(s)	8, 239, 336, 408, 498
SatI	GCNGC	3 cut(s)	132, 141, 699
Sau3AI	GATC	1 cut(s)	402
ScrFI	CCNGG	3 cut(s)	230, 486, 584
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	9 cut(s)	106, 155, 164, 273, 342, 396, 504, 524, 612
SfaNI	GCATC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	3 cut(s)	5, 9, 656
SsiI	CCGC	2 cut(s)	26, 286
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	228, 484, 582
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	352, 424
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	524, 604
TasI	AATT	3 cut(s)	5, 9, 656
TatI	WGTACW	1 cut(s)	219
Tru1I	TTAA	5 cut(s)	8, 239, 336, 408, 498
Tru9I	TTAA	5 cut(s)	8, 239, 336, 408, 498
TscAI	CASTG	2 cut(s)	357, 700
TseFI	GTSAC	3 cut(s)	99, 394, 691
TseI	GCWGC	3 cut(s)	131, 140, 698
Tsp45I	GTSAC	3 cut(s)	99, 394, 691
TspDTI	ATGAA	2 cut(s)	17, 476
TspRI	CASTG	2 cut(s)	357, 700
Vha464I	CTTAAG	1 cut(s)	497
VspI	ATTAAT	1 cut(s)	8
XceI	RCATGY	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.