Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Reverse (-)

23296583 .. 23299252

Gene Structure 2670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTTGACATTGAGAGCAGCGGCGGCCGCCGCGGCGGGGTCCACTCGCGGCTTGAGTCGGCTCTTCTCAACAAGTTTCATTCCCCCAATGAACTCTGCAACGCCCTCGGCTCGAGAGCAGGCTGAGCCGAGCACCAACCTCTTCGTCTCCGGGCTCAGCAAACGTACTACTACAGAAAAACTACACGAAGCCTTTTCTCAGTTTGGTGAAGTAGTTCATGCTAGAGTGGTAACTGATCGGGTATCAGGATATTCTAAGGGATTTGGTTTTGTAAAGTATGCTACCTTAGAAGATGCTGCCAAAGGCATAGAGGGCATGGATGGAAAGTTTCTCGATGGTTGGGTCATATTTGCTGAATACGCAAGACCAAGACAGCCGCCTCCACCACCTCAGATCAATGTGGCTTCTCCATATAGCCGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

143

Amino Acids

15.33

Weight (kDa)

9.57

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	48 - 114	6.2e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	35, 51
AciI	CCGC	8 cut(s)	23, 26, 30, 33, 35, 38, 51, 380
AcoI	YGGCCR	1 cut(s)	27
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	39
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	20, 299
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	42
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	32, 286
BccI	CCATC	2 cut(s)	317, 332
BceAI	ACGGC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 300, 380
BlpI	GCTNAGC	2 cut(s)	126, 158
BlsI	GCNGC	9 cut(s)	22, 25, 28, 31, 34, 37, 53, 301, 381
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	42
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	286
Bpu1102I	GCTNAGC	2 cut(s)	126, 158
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	33, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	33, 108
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	4 cut(s)	117, 172, 215, 407
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	32, 286
Bsh1236I	CGCG	2 cut(s)	35, 51
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	137, 159
Bsp143I	GATC	2 cut(s)	238, 396
Bsp1720I	GCTNAGC	2 cut(s)	126, 158
BspACI	CCGC	8 cut(s)	23, 26, 30, 33, 35, 38, 51, 380
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	4 cut(s)	118, 171, 214, 406
BspFNI	CGCG	2 cut(s)	35, 51
BspLI	GGNNCC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	33, 108
BssMI	GATC	2 cut(s)	238, 396
Bst6I	CTCTTC	2 cut(s)	71, 149
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	6 cut(s)	126, 158, 201, 258, 289, 393
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	35, 51
BstKTI	GATC	2 cut(s)	241, 399
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	238, 396
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 29, 32, 35, 127, 315, 362
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	2 cut(s)	35, 51
BstV1I	GCAGC	2 cut(s)	32, 286
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	123
CciNI	GCGGCCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	42
Cfr42I	CCGCGG	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	2 cut(s)	221, 319
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	6 cut(s)	126, 158, 201, 258, 289, 393
DpnI	GATC	2 cut(s)	240, 398
DpnII	GATC	2 cut(s)	238, 396
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	71, 149
EarI	CTCTTC	2 cut(s)	71, 149
EclXI	CGGCCG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	42
Eco52I	CGGCCG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	224, 322
FaiI	YATR	7 cut(s)	222, 282, 311, 320, 350, 415, 417
FatI	CATG	2 cut(s)	220, 318
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 300, 380
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 300, 380
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 300, 380
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	224, 322
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	3 cut(s)	116, 249, 335
Hpy8I	GTNNAC	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 29, 32, 35, 127, 315, 362
HpyF3I	CTNAG	6 cut(s)	126, 158, 201, 258, 289, 393
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	224, 322
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	238, 396
LguI	GCTCTTC	1 cut(s)	71
LpnPI	CCDG	3 cut(s)	107, 166, 234
Lsp1109I	GCAGC	2 cut(s)	32, 286
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	240, 398
MboI	GATC	2 cut(s)	238, 396
MboII	GAAGA	3 cut(s)	58, 136, 305
MhlI	GDGCHC	2 cut(s)	137, 159
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	5 cut(s)	118, 152, 307, 393, 402
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	427
MspA1I	CMGCKG	2 cut(s)	23, 35
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	2 cut(s)	35, 51
MwoI	GCNNNNNNNGC	7 cut(s)	26, 29, 32, 35, 127, 315, 362
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	238, 396
NlaIII	CATG	2 cut(s)	224, 322
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	2 cut(s)	89, 156
NotI	GCGGCCGC	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	216
PkrI	GCNGC	9 cut(s)	22, 25, 28, 31, 34, 37, 53, 301, 381
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SacII	CCGCGG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 300, 380
Sau3AI	GATC	2 cut(s)	238, 396
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	137, 159
SetI	ASST	4 cut(s)	144, 169, 290, 394
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	114
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	42
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	55, 114
SmoI	CTYRAG	2 cut(s)	55, 114
SsiI	CCGC	8 cut(s)	23, 26, 30, 33, 35, 38, 51, 380
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	115, 336
TauI	GCSGC	7 cut(s)	26, 29, 32, 35, 38, 54, 382
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TseI	GCWGC	2 cut(s)	20, 299
TspDTI	ATGAA	3 cut(s)	70, 107, 209
VpaK11BI	GGWCC	1 cut(s)	42
XhoI	CTCGAG	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.