pycom11g20610

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015574
Physical Location & Seq
Forward (+)
23705798 .. 23706196
399 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGACAGCATTCGATCATCATTATCAAAACATGATGACTGCAGTTGAATTTGTAGACTACTTTCCATCCATGATTGCAAGGTTGGGAGACGAAGGGTTTATAGGGGAGCTTTGCAACGGCTTTCGATTGCTGATGGACGTGGAGAAGGGGCTCATCACTTTTGAGAGCTTGAAGAGTAACTGCCTTCTGCTGGGATTGCATGACATGGGAGATGATGAGCTTGTGTGGATGTTGATGGAGGGTGATTTGGATGGAGATGGAGCTCTCAGTCAGATGGAGTTTTGTATTCTCATGTTTAGGTTAAGTCCAGGTCTAATGGATGGATCTAGGCAATTGTGGATGGAAGACTACGATCATCGTCGTGTAAATGATCATCAAATACATGTAGGCTTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_8

Protein Analysis

133

Amino Acids

15.22

Weight (kDa)

4.4

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_8 PF13833 48 - 100 2.3e-16 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015574)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21240
malus_domestica MD03G1186200.v1.1 MD11G1233900.v1.1
prunus_persica Prupe.4G192800_v2.0.a1
pyrus_communis pycom11g20610
rosa_chinensis RchiOBHm_Chr5g0036321
rosa_laevigata RLG00000033686
rosa_multiflora Rmu_sc0000247.1_g000078
rosa_roxburghii Rroxscaffold_1G00044470
rosa_rugosa Rorug05G0155100
rosa_samantha Rh5AG248400 Rh5BG249200 Rh5CG280500 Rh5DG257700
rosa_wichuraiana Rw0G002060 Rw5G022810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 1 cut(s) 331
AcsI RAATTY 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 2 cut(s) 47, 172
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 4 cut(s) 109, 168, 220, 263
AluI AGCT 4 cut(s) 109, 168, 220, 263
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 254
BanII GRGCYC 2 cut(s) 153, 265
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 265
BccI CCATC 8 cut(s) 73, 127, 229, 245, 251, 268, 314, 334
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 309
BmgBI CACGTC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 309
BseGI GGATG 5 cut(s) 65, 234, 256, 325, 345
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 280
BseYI CCCAGC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 153, 265
Bsp143I GATC 4 cut(s) 13, 323, 352, 370
BspCNI CTCAG 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 331
BssMI GATC 4 cut(s) 13, 323, 352, 370
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 5 cut(s) 65, 234, 256, 325, 345
BstKTI GATC 4 cut(s) 16, 326, 355, 373
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 4 cut(s) 13, 323, 352, 370
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 5 cut(s) 65, 234, 256, 325, 345
CviAII CATG 6 cut(s) 31, 70, 200, 205, 292, 383
CviJI RGCY 7 cut(s) 109, 120, 151, 168, 220, 263, 390
CviKI_1 RGCY 7 cut(s) 109, 120, 151, 168, 220, 263, 390
DdeI CTNAG 1 cut(s) 266
DpnI GATC 4 cut(s) 15, 325, 354, 372
DpnII GATC 4 cut(s) 13, 323, 352, 370
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 2 cut(s) 153, 265
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 2 cut(s) 153, 265
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 6 cut(s) 34, 73, 203, 208, 295, 386
FaiI YATR 7 cut(s) 32, 71, 101, 201, 206, 293, 384
FatI CATG 6 cut(s) 30, 69, 199, 204, 291, 382
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 54
FokI GGATG 5 cut(s) 52, 241, 263, 332, 352
FriOI GRGCYC 2 cut(s) 153, 265
FspBI CTAG 1 cut(s) 327
GsaI CCCAGC 1 cut(s) 194
Hin1II CATG 6 cut(s) 34, 73, 203, 208, 295, 386
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 363
HpyAV CCTTC 3 cut(s) 86, 139, 194
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 41, 77, 114, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 6 cut(s) 34, 73, 203, 208, 295, 386
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 4 cut(s) 13, 323, 352, 370
LmnI GCTCC 2 cut(s) 106, 260
LpnPI CCDG 3 cut(s) 176, 294, 321
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 176
MalI GATC 4 cut(s) 15, 325, 354, 372
MboI GATC 4 cut(s) 13, 323, 352, 370
MboII GAAGA 2 cut(s) 184, 356
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 2 cut(s) 153, 265
MluCI AATT 2 cut(s) 47, 332
MnlI CCTC 1 cut(s) 232
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 8
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 4 cut(s) 13, 323, 352, 370
NlaIII CATG 6 cut(s) 34, 73, 203, 208, 295, 386
NspI RCATGY 1 cut(s) 386
PciI ACATGT 1 cut(s) 382
PctI GAATGC 1 cut(s) 8
PscI ACATGT 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 307
PstI CTGCAG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 360
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 4 cut(s) 13, 323, 352, 370
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 2 cut(s) 153, 265
SetI ASST 8 cut(s) 83, 111, 141, 170, 222, 265, 302, 313
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 2 cut(s) 47, 332
SspMI CTAG 1 cut(s) 327
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 307
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 12, 124
TasI AATT 2 cut(s) 47, 332
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.