pycom11g21090

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009982
Physical Location & Seq
Forward (+)
24196234 .. 24197151
918 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGCCTTCTGGAAGCATGTTCAGAGAGAGGAAGATGGGGAAATCATCAGGTGCGGCGCCAGGCAGCAGAGACTGGACTCAGATCTATGCAATCTACGGTCTCGAGCAGTGGCAGACCATTCTTTTCCTCCTCTTCAACGCTGTCCTATTTACCATTATGTCCCTCCTCTACCTCACTTACTTCCACCCCATCACCCTCTTCTTCCACCGCCTCCTCCCCATCGACTCCGCCCGCTTCGCCGCCGGCTTCACCGGCTCCGTCACCGCCCTCTCCGCCCTCTGCCTCTTCTTCGCCTCCGGACACTTCCTATACTCCTCACTCCCCCTCCACTATGATGTCGTGCAGCGCATGGTCAGCTCCGTCAACGACTGGTCAACCGTGAAGCACGCCCTCGACCTCGGATGCGGCCGCGGCATACTTTTGAACGCGGTGGCGACCCAGATGAAGAAGGAGGGGAGTTCGGGTCGGGTCGTGGGACTGGACCGGTCCAAGATGACGAGCCTTTCGTCGACGCTGCGAACGGCGAAGATTGAAGGTGTGGGGGAGTACGTGACTTGCCGTGAGGGCGACCCCAGTAGATTGCCGTTCGGGGACGGGTACTTCGACGTCGTGGTCTCCGCCGTGTTCGTCCACACCGTCGGCAAGGAGTACGGCCATAGGACAGTGGAGGCGTCGGCAGAGCGGATGAGGGTGATCGGCGAGATGGTGAGGGTTCTGAAGCCCAGTGGGGTCGCTGTCGTGTGGGATCTACTGCACGTGCCGGAGTACGTGCGGCGGCTGCAGGAGCTGAAGATGGAGGACATTCGGGTGTCGGAGCGGGTGACGGCGTTTATGGCGAGCAGCCAGATCGTGTCTTTTCGCAAGCCCAGTCAGCACGTTATCGGGCCCGGTGAGGTCCGACTCGACTGGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

306

Amino Acids

34.04

Weight (kDa)

9.28

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubie_methyltran PF01209 116 - 250 6.8e-06 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 129 - 251 1.2e-11 Methyltransferase domain
Methyltransf_11 PF08241 131 - 246 4.2e-14 Methyltransferase domain
Methyltransf_25 PF13649 131 - 243 5.4e-11 Methyltransferase domain
Methyltransf_12 PF08242 131 - 244 1e-05 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15530 AT3G15530 AT5G54400
fragaria_vesca FvH4_3g20760 FvH4_3g20760
malus_domestica MD03G1221800.v1.1 MD11G1239200.v1.1
prunus_persica Prupe.4G187700_v2.0.a1 Prupe.4G187700_v2.0.a1
pyrus_communis pycom03g17060 pycom11g21090
rosa_chinensis RchiOBHm_Chr5g0034991
rosa_laevigata RLG00000033590
rosa_multiflora Rmu_sc0000879.1_g000037
rosa_roxburghii Rroxscaffold_1G00045400
rosa_rugosa Rorug05G0149300
rosa_samantha Rh5AG242300 Rh5BG241900 Rh5CG273400 Rh5DG250500
rosa_wichuraiana Rw5G022130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 611
AatII GACGTC 1 cut(s) 609
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 2 cut(s) 682, 817
AccI GTMKAC 1 cut(s) 509
AccII CGCG 2 cut(s) 411, 428
AccIII TCCGGA 1 cut(s) 296
AclWI GGATC 1 cut(s) 753
AcoI YGGCCR 2 cut(s) 406, 652
AcuI CTGAAG 2 cut(s) 737, 809
AcvI CACGTG 1 cut(s) 757
AcyI GRCGYC 3 cut(s) 56, 606, 671
AfaI GTAC 4 cut(s) 548, 599, 650, 767
AgeI ACCGGT 1 cut(s) 483
AgsI TTSAA 3 cut(s) 136, 424, 533
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 357, 787
AluI AGCT 2 cut(s) 357, 787
Alw26I GTCTC 3 cut(s) 63, 104, 619
AlwI GGATC 1 cut(s) 753
AlwNI CAGNNNCTG 2 cut(s) 72, 787
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 296
AoxI GGCC 3 cut(s) 406, 652, 884
ApaI GGGCCC 1 cut(s) 888
ApeKI GCWGC 5 cut(s) 63, 343, 514, 778, 840
ArsI GACNNNNNNTTYG 4 cut(s) 487, 519, 584, 616
AsiGI ACCGGT 1 cut(s) 483
AspLEI GCGC 2 cut(s) 58, 348
AspS9I GGNCC 5 cut(s) 481, 486, 884, 885, 895
AsuC2I CCSGG 1 cut(s) 888
AsuHPI GGTGA 7 cut(s) 184, 241, 253, 703, 718, 832, 902
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 3 cut(s) 481, 486, 895
BaeGI GKGCMC 1 cut(s) 888
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 888
BbrPI CACGTG 1 cut(s) 757
BbvI GCAGC 5 cut(s) 75, 355, 501, 765, 852
BccI CCATC 5 cut(s) 28, 197, 227, 697, 787
BceAI ACGGC 6 cut(s) 537, 543, 568, 605, 667, 840
BcgI CGANNNNNNTGC 2 cut(s) 829, 863
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 1 cut(s) 888
BcoDI GTCTC 3 cut(s) 63, 104, 619
BfmI CTRYAG 1 cut(s) 779
BfoI RGCGCY 1 cut(s) 59
BglI GCCNNNNNGGC 1 cut(s) 564
BglII AGATCT 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 60, 888
Bme18I GGWCC 3 cut(s) 481, 486, 895
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 5 cut(s) 481, 486, 884, 885, 895
BmiI GGNNCC 3 cut(s) 57, 256, 886
BmrFI CCNGG 2 cut(s) 60, 888
BmrI ACTGGG 3 cut(s) 567, 717, 861
BmsI GCATC 2 cut(s) 392, 902
BmuI ACTGGG 3 cut(s) 567, 717, 861
BpuMI CCSGG 1 cut(s) 888
BsaAI YACGTR 3 cut(s) 550, 757, 769
BsaHI GRCGYC 3 cut(s) 56, 606, 671
BsaI GGTCTC 2 cut(s) 104, 619
BsaJI CCNNGG 2 cut(s) 397, 409
BsaWI WCCGGW 2 cut(s) 296, 483
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 448, 478
Bse118I RCCGGY 3 cut(s) 242, 251, 483
Bse1I ACTGG 7 cut(s) 77, 374, 483, 573, 723, 867, 911
BseAI TCCGGA 1 cut(s) 296
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 397, 409
BseGI GGATG 2 cut(s) 407, 690
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 7 cut(s) 77, 374, 483, 573, 723, 867, 911
BseRI GAGGAG 4 cut(s) 119, 155, 203, 304
BseSI GKGCMC 1 cut(s) 888
BseX3I CGGCCG 1 cut(s) 406
BseXI GCAGC 5 cut(s) 75, 355, 501, 765, 852
BsgI GTGCAG 2 cut(s) 362, 737
Bsh1236I CGCG 2 cut(s) 411, 428
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 3 cut(s) 408, 654, 886
BshNI GGYRCC 1 cut(s) 55
BshTI ACCGGT 1 cut(s) 483
BsiEI CGRYCG 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 6 cut(s) 243, 252, 297, 484, 761, 888
BslFI GGGAC 3 cut(s) 145, 489, 605
BsmAI GTCTC 3 cut(s) 63, 104, 619
BsmFI GGGAC 3 cut(s) 145, 489, 605
BsnI GGCC 3 cut(s) 408, 654, 886
Bso31I GGTCTC 2 cut(s) 104, 619
BsoBI CYCGRG 1 cut(s) 101
Bsp120I GGGCCC 1 cut(s) 884
Bsp1286I GDGCHC 1 cut(s) 888
Bsp13I TCCGGA 1 cut(s) 296
Bsp143I GATC 4 cut(s) 81, 693, 745, 846
BspANI GGCC 3 cut(s) 408, 654, 886
BspCNI CTCAG 1 cut(s) 91
BspEI TCCGGA 1 cut(s) 296
BspFNI CGCG 2 cut(s) 411, 428
BspLI GGNNCC 3 cut(s) 57, 256, 886
BspMAI CTGCAG 1 cut(s) 783
BspPI GGATC 1 cut(s) 753
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 2 cut(s) 104, 619
BsrBI CCGCTC 2 cut(s) 682, 817
BsrFI RCCGGY 3 cut(s) 242, 251, 483
BsrI ACTGG 7 cut(s) 77, 374, 483, 573, 723, 867, 911
BssAI RCCGGY 3 cut(s) 242, 251, 483
BssECI CCNNGG 2 cut(s) 397, 409
BssMI GATC 4 cut(s) 81, 693, 745, 846
BssNI GRCGYC 3 cut(s) 56, 606, 671
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 98, 379, 637, 664
Bst6I CTCTTC 3 cut(s) 137, 203, 290
BstACI GRCGYC 3 cut(s) 56, 606, 671
BstBAI YACGTR 3 cut(s) 550, 757, 769
BstC8I GCNNGC 5 cut(s) 232, 244, 387, 838, 863
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 2 cut(s) 407, 690
BstFNI CGCG 2 cut(s) 411, 428
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 2 cut(s) 58, 348
BstKTI GATC 4 cut(s) 84, 696, 748, 849
BstMAI GTCTC 3 cut(s) 63, 104, 619
BstMBI GATC 4 cut(s) 81, 693, 745, 846
BstMCI CGRYCG 1 cut(s) 409
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 2 cut(s) 58, 886
BstSFI CTRYAG 1 cut(s) 779
BstSLI GKGCMC 1 cut(s) 888
BstUI CGCG 2 cut(s) 411, 428
BstV1I GCAGC 5 cut(s) 75, 355, 501, 765, 852
BstX2I RGATCY 2 cut(s) 81, 745
BstYI RGATCY 2 cut(s) 81, 745
BstZI CGGCCG 1 cut(s) 406
BsuRI GGCC 3 cut(s) 408, 654, 886
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 2 cut(s) 407, 690
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 3 cut(s) 113, 669, 730
Cac8I GCNNGC 5 cut(s) 232, 244, 387, 838, 863
CaiI CAGNNNCTG 2 cut(s) 72, 787
CciNI GCGGCCGC 1 cut(s) 406
CfoI GCGC 2 cut(s) 58, 348
Cfr10I RCCGGY 3 cut(s) 242, 251, 483
Cfr13I GGNCC 5 cut(s) 481, 486, 884, 885, 895
Cfr42I CCGCGG 1 cut(s) 412
CseI GACGC 2 cut(s) 520, 660
Csp6I GTAC 4 cut(s) 547, 598, 649, 766
CspAI ACCGGT 1 cut(s) 483
CviAII CATG 2 cut(s) 16, 349
CviQI GTAC 4 cut(s) 547, 598, 649, 766
DdeI CTNAG 1 cut(s) 78
DinI GGCGCC 1 cut(s) 57
DpnI GATC 4 cut(s) 83, 695, 747, 848
DpnII GATC 4 cut(s) 81, 693, 745, 846
DrdI GACNNNNNNGTC 1 cut(s) 611
DseDI GACNNNNNNGTC 1 cut(s) 611
EaeI YGGCCR 2 cut(s) 406, 652
EagI CGGCCG 1 cut(s) 406
Eam1104I CTCTTC 3 cut(s) 137, 203, 290
EarI CTCTTC 3 cut(s) 137, 203, 290
EciI GGCGGA 3 cut(s) 217, 262, 607
EclXI CGGCCG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 888
Eco31I GGTCTC 2 cut(s) 104, 619
Eco47I GGWCC 3 cut(s) 481, 486, 895
Eco52I CGGCCG 1 cut(s) 406
Eco57I CTGAAG 2 cut(s) 737, 809
Eco72I CACGTG 1 cut(s) 757
Eco88I CYCGRG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 888
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
FaeI CATG 2 cut(s) 19, 352
FaiI YATR 9 cut(s) 17, 87, 158, 310, 333, 350, 416, 657, 833
FaqI GGGAC 3 cut(s) 145, 489, 605
FatI CATG 2 cut(s) 15, 348
FauI CCCGC 2 cut(s) 239, 810
FblI GTMKAC 1 cut(s) 509
FokI GGATG 2 cut(s) 414, 697
FriOI GRGCYC 1 cut(s) 888
GlaI GCGC 2 cut(s) 57, 347
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 3 cut(s) 408, 654, 886
HapII CCGG 6 cut(s) 243, 252, 297, 484, 761, 888
HgaI GACGC 2 cut(s) 520, 660
HhaI GCGC 2 cut(s) 58, 348
Hin1I GRCGYC 3 cut(s) 56, 606, 671
Hin1II CATG 2 cut(s) 19, 352
Hin6I GCGC 2 cut(s) 56, 346
HinP1I GCGC 2 cut(s) 56, 346
HincII GTYRAC 3 cut(s) 364, 375, 510
HindII GTYRAC 3 cut(s) 364, 375, 510
HinfI GANTC 3 cut(s) 76, 224, 900
HpaII CCGG 6 cut(s) 243, 252, 297, 484, 761, 888
HphI GGTGA 7 cut(s) 184, 241, 253, 703, 718, 832, 902
Hpy166II GTNNAC 4 cut(s) 364, 375, 510, 631
Hpy188I TCNGA 6 cut(s) 23, 81, 401, 717, 814, 899
Hpy188III TCNNGA 3 cut(s) 9, 101, 297
Hpy8I GTNNAC 4 cut(s) 364, 375, 510, 631
Hpy99I CGWCG 6 cut(s) 511, 514, 608, 611, 641, 676
HpyAV CCTTC 3 cut(s) 15, 442, 527
HpyCH4III ACNGT 4 cut(s) 98, 379, 637, 664
HpyCH4IV ACGT 5 cut(s) 549, 606, 756, 768, 876
HpyCH4V TGCA 4 cut(s) 89, 343, 754, 781
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 5 cut(s) 549, 606, 756, 768, 876
Hsp92I GRCGYC 3 cut(s) 56, 606, 671
Hsp92II CATG 2 cut(s) 19, 352
HspAI GCGC 2 cut(s) 56, 346
KasI GGCGCC 1 cut(s) 55
Kpn2I TCCGGA 1 cut(s) 296
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
KspI CCGCGG 1 cut(s) 412
Kzo9I GATC 4 cut(s) 81, 693, 745, 846
LmnI GCTCC 4 cut(s) 260, 362, 784, 814
Lsp1109I GCAGC 5 cut(s) 75, 355, 501, 765, 852
LweI GCATC 2 cut(s) 392, 902
MaeII ACGT 5 cut(s) 549, 606, 756, 768, 876
MaeIII GTNAC 3 cut(s) 259, 550, 820
MalI GATC 4 cut(s) 83, 695, 747, 848
MbiI CCGCTC 2 cut(s) 682, 817
MboI GATC 4 cut(s) 81, 693, 745, 846
MboII GAAGA 9 cut(s) 43, 124, 190, 193, 277, 280, 457, 538, 802
MflI RGATCY 2 cut(s) 81, 745
MhlI GDGCHC 1 cut(s) 888
Mly113I GGCGCC 1 cut(s) 56
MlyI GAGTC 3 cut(s) 70, 218, 894
MmeI TCCRAC 1 cut(s) 792
MroI TCCGGA 1 cut(s) 296
MroNI GCCGGC 1 cut(s) 242
MslI CAYNNNNRTG 2 cut(s) 333, 806
MspA1I CMGCKG 1 cut(s) 411
MspI CCGG 6 cut(s) 243, 252, 297, 484, 761, 888
MspR9I CCNGG 2 cut(s) 60, 888
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 2 cut(s) 411, 428
NaeI GCCGGC 1 cut(s) 244
NarI GGCGCC 1 cut(s) 56
NciI CCSGG 1 cut(s) 888
NdeII GATC 4 cut(s) 81, 693, 745, 846
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 19, 352
NlaIV GGNNCC 3 cut(s) 57, 256, 886
NmuCI GTSAC 3 cut(s) 259, 550, 820
NotI GCGGCCGC 1 cut(s) 406
NspI RCATGY 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 101
PcsI WCGNNNNNNNCGW 3 cut(s) 503, 600, 633
PdiI GCCGGC 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 483
PleI GAGTC 3 cut(s) 70, 218, 894
PluTI GGCGCC 1 cut(s) 59
PmaCI CACGTG 1 cut(s) 757
PmlI CACGTG 1 cut(s) 757
PpsI GAGTC 3 cut(s) 70, 218, 894
Ppu21I YACGTR 3 cut(s) 550, 757, 769
Psp6I CCWGG 1 cut(s) 58
PspCI CACGTG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 3 cut(s) 57, 256, 886
PspOMI GGGCCC 1 cut(s) 884
PspPI GGNCC 5 cut(s) 481, 486, 884, 885, 895
PstI CTGCAG 1 cut(s) 783
PstNI CAGNNNCTG 2 cut(s) 72, 787
PsuI RGATCY 2 cut(s) 81, 745
RsaI GTAC 4 cut(s) 548, 599, 650, 767
RsaNI GTAC 4 cut(s) 547, 598, 649, 766
RseI CAYNNNNRTG 2 cut(s) 333, 806
SacII CCGCGG 1 cut(s) 412
SalI GTCGAC 1 cut(s) 508
Sau3AI GATC 4 cut(s) 81, 693, 745, 846
Sau96I GGNCC 5 cut(s) 481, 486, 884, 885, 895
SchI GAGTC 3 cut(s) 70, 218, 894
ScrFI CCNGG 2 cut(s) 60, 888
SduI GDGCHC 1 cut(s) 888
SfaNI GCATC 2 cut(s) 392, 902
SfcI CTRYAG 1 cut(s) 779
SfoI GGCGCC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 101
Sfr303I CCGCGG 1 cut(s) 412
SgrBI CCGCGG 1 cut(s) 412
SgrDI CGTCGACG 1 cut(s) 508
SinI GGWCC 3 cut(s) 481, 486, 895
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 333, 806
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SspDI GGCGCC 1 cut(s) 55
StyD4I CCNGG 2 cut(s) 58, 886
TaaI ACNGT 4 cut(s) 98, 379, 637, 664
TaiI ACGT 5 cut(s) 552, 609, 759, 771, 879
TaqI TCGA 6 cut(s) 102, 222, 393, 509, 603, 903
TauI GCSGC 7 cut(s) 56, 242, 408, 411, 414, 775, 778
TscAI CASTG 3 cut(s) 113, 669, 730
TseFI GTSAC 3 cut(s) 259, 550, 820
TseI GCWGC 5 cut(s) 63, 343, 514, 778, 840
Tsp45I GTSAC 3 cut(s) 259, 550, 820
TspDTI ATGAA 1 cut(s) 458
TspGWI ACGGA 2 cut(s) 247, 349
TspRI CASTG 3 cut(s) 113, 669, 730
VpaK11BI GGWCC 3 cut(s) 481, 486, 895
XceI RCATGY 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 509
ZraI GACGTC 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.