Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014959

Physical Location & Seq

Genomic Coordinates Forward (+)

27153431 .. 27156160

Gene Structure 2730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGGCTGCTGAGCTACTTGGGACAATGGCGAAGCGTAGCAAAAGAAGCCATGGATCTGTCAGTAACTGTAGCAAAGTTCATGGGTTTGCTCCACGTCACCGACGCCTACCTCTGCTCCTCCACCCTCGTCTACGGCCCCAGTATGCTCCCTACCCTGAACATCTCCGGCGACGTGCTCCTCTCCGAACACGTGTCCCATCGCATTGGGAAGGTGGGTCCCGGCGATTTGGTCCTGGTTCGGTCTCCGACGGACCCCCGGAAGATTGTGACCAAGCGTGTCCTGGGTATGCAGGGTGATAAAGTCACCTACTTTGTCGATCCAAAGCACAGCGACAGGTTGCATACGACCGTGGTGCCTAAGGGGCATGTTTGGATTCAGGGGGATAACATCTATTCCTCCTTTGACTCACGAACATATGGACCTATACCTTATGGTCTTATTCAAGGCAAAGTGTTTTGCAGGGTCTGGCCACCTGATAGCTTTGGATCATTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0019538 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0034613 GO:0034622 GO:0034641 GO:0034982 GO:0042720 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

167

Amino Acids

18.4

Weight (kDa)

9.12

Isoelectric Point (pI)

24.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	23 - 104	4.1e-11	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	116 - 157	3.1e-08	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53530 AT1G53530
fragaria_vesca	FvH4_3g17310 FvH4_3g17310
malus_domestica	MD03G1252300.v1.1 MD11G1273900.v1.1
prunus_persica	Prupe.4G153200_v2.0.a1
pyrus_communis	pycom11g24160
rosa_chinensis	RchiOBHm_Chr5g0028841
rosa_laevigata	RLG00000033118
rosa_rugosa	Rorug05G0110700
rosa_samantha	Rh5AG203100 Rh5BG201100 Rh5CG222200 Rh5DG204800
rosa_wichuraiana	Rw5G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	132
AclWI	GGATC	3 cut(s)	63, 314, 496
AcoI	YGGCCR	1 cut(s)	470
AcvI	CACGTG	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	105
AflIII	ACRYGT	2 cut(s)	190, 192
AgsI	TTSAA	1 cut(s)	446
AjiI	CACGTC	2 cut(s)	97, 175
AjnI	CCWGG	2 cut(s)	234, 282
AluBI	AGCT	2 cut(s)	15, 483
AluI	AGCT	2 cut(s)	15, 483
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	63, 314, 496
AlwNI	CAGNNNCTG	2 cut(s)	68, 468
AoxI	GGCC	2 cut(s)	136, 470
ApeKI	GCWGC	1 cut(s)	7
AspS9I	GGNCC	5 cut(s)	137, 218, 232, 253, 422
AsuC2I	CCSGG	2 cut(s)	222, 259
AsuHPI	GGTGA	3 cut(s)	91, 298, 308
AvaII	GGWCC	4 cut(s)	218, 232, 253, 422
AxyI	CCTNAGG	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	2 cut(s)	236, 284
BcnI	CCSGG	2 cut(s)	222, 259
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	364
BisI	GCNGC	1 cut(s)	8
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	4 cut(s)	222, 236, 259, 284
Bme18I	GGWCC	4 cut(s)	218, 232, 253, 422
BmgBI	CACGTC	2 cut(s)	97, 175
BmgT120I	GGNCC	5 cut(s)	137, 218, 232, 253, 422
BmiI	GGNNCC	5 cut(s)	139, 219, 220, 255, 357
BmrFI	CCNGG	4 cut(s)	222, 236, 259, 284
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuMI	CCSGG	2 cut(s)	222, 259
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	249
BsaJI	CCNNGG	4 cut(s)	51, 257, 283, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse1I	ACTGG	1 cut(s)	141
Bse21I	CCTNAGG	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	236, 284
BseDI	CCNNGG	4 cut(s)	51, 257, 283, 351
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	109, 170
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	138, 472
BshNI	GGYRCC	1 cut(s)	355
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	3 cut(s)	168, 222, 259
BslFI	GGGAC	3 cut(s)	36, 181, 204
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	3 cut(s)	36, 181, 204
BsnI	GGCC	2 cut(s)	138, 472
Bso31I	GGTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	55, 319, 488
Bsp1720I	GCTNAGC	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	2 cut(s)	138, 472
BspLI	GGNNCC	5 cut(s)	139, 219, 220, 255, 357
BspPI	GGATC	3 cut(s)	63, 314, 496
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	4 cut(s)	51, 257, 283, 351
BssMI	GATC	3 cut(s)	55, 319, 488
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	236, 284
Bst4CI	ACNGT	2 cut(s)	70, 352
BstACI	GRCGYC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	11, 360
BstDSI	CCRYGG	2 cut(s)	51, 351
BstKTI	GATC	3 cut(s)	58, 322, 491
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	55, 319, 488
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 364
BstNI	CCWGG	2 cut(s)	236, 284
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	4 cut(s)	220, 234, 257, 282
BstSFI	CTRYAG	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	138, 472
BtgI	CCRYGG	2 cut(s)	51, 351
BtgZI	GCGATG	1 cut(s)	185
BtrI	CACGTC	2 cut(s)	97, 175
CaiI	CAGNNNCTG	2 cut(s)	68, 468
Cfr13I	GGNCC	5 cut(s)	137, 218, 232, 253, 422
CseI	GACGC	1 cut(s)	113
CviAII	CATG	3 cut(s)	52, 82, 368
CviJI	RGCY	6 cut(s)	7, 15, 50, 138, 472, 483
CviKI_1	RGCY	6 cut(s)	7, 15, 50, 138, 472, 483
DdeI	CTNAG	2 cut(s)	11, 360
DpnI	GATC	3 cut(s)	57, 321, 490
DpnII	GATC	3 cut(s)	55, 319, 488
EaeI	YGGCCR	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	249
Eco47I	GGWCC	4 cut(s)	218, 232, 253, 422
Eco72I	CACGTG	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	234, 282
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	55, 85, 371
FaqI	GGGAC	3 cut(s)	36, 181, 204
FatI	CATG	3 cut(s)	51, 81, 367
FauNDI	CATATG	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	138, 472
HapII	CCGG	3 cut(s)	168, 222, 259
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	55, 85, 371
HinfI	GANTC	2 cut(s)	376, 407
HpaII	CCGG	3 cut(s)	168, 222, 259
HphI	GGTGA	3 cut(s)	91, 298, 308
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	187, 249
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	3 cut(s)	107, 176, 253
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	70, 352
HpyCH4IV	ACGT	3 cut(s)	96, 174, 192
HpyCH4V	TGCA	3 cut(s)	292, 343, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 364
HpyF3I	CTNAG	2 cut(s)	11, 360
HpySE526I	ACGT	3 cut(s)	96, 174, 192
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	55, 85, 371
KflI	GGGWCCC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	55, 319, 488
LmnI	GCTCC	4 cut(s)	96, 122, 153, 183
MaeII	ACGT	3 cut(s)	96, 174, 192
MaeIII	GTNAC	4 cut(s)	64, 97, 268, 304
MalI	GATC	3 cut(s)	57, 321, 490
MboI	GATC	3 cut(s)	55, 319, 488
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	472
MluNI	TGGCCA	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	5 cut(s)	122, 130, 137, 191, 409
Mox20I	TGGCCA	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	472
Msp20I	TGGCCA	1 cut(s)	472
MspI	CCGG	3 cut(s)	168, 222, 259
MspR9I	CCNGG	4 cut(s)	222, 236, 259, 284
MvaI	CCWGG	2 cut(s)	236, 284
MwoI	GCNNNNNNNGC	2 cut(s)	47, 364
NciI	CCSGG	2 cut(s)	222, 259
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	3 cut(s)	55, 319, 488
NlaIII	CATG	3 cut(s)	55, 85, 371
NlaIV	GGNNCC	5 cut(s)	139, 219, 220, 255, 357
NmuCI	GTSAC	3 cut(s)	97, 268, 304
NspI	RCATGY	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	401
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	401
Ppu21I	YACGTR	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	234, 282
PspCI	CACGTG	1 cut(s)	193
PspGI	CCWGG	2 cut(s)	234, 282
PspN4I	GGNNCC	5 cut(s)	139, 219, 220, 255, 357
PspPI	GGNCC	5 cut(s)	137, 218, 232, 253, 422
PspPPI	RGGWCCY	1 cut(s)	218
PstNI	CAGNNNCTG	2 cut(s)	68, 468
PsuI	RGATCY	1 cut(s)	55
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	55, 319, 488
Sau96I	GGNCC	5 cut(s)	137, 218, 232, 253, 422
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	4 cut(s)	222, 236, 259, 284
SduI	GDGCHC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	4 cut(s)	218, 232, 253, 422
StyD4I	CCNGG	4 cut(s)	220, 234, 257, 282
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	70, 352
TaiI	ACGT	3 cut(s)	99, 177, 195
TaqI	TCGA	1 cut(s)	318
TaqII	GACCGA	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	376
TseFI	GTSAC	3 cut(s)	97, 268, 304
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	3 cut(s)	97, 268, 304
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	266
VpaK11BI	GGWCC	4 cut(s)	218, 232, 253, 422
XceI	RCATGY	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.